Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000779

Physical Location & Seq

Genomic Coordinates Forward (+)

40626281 .. 40627333

Gene Structure 1053 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ32316

Sequence Viewer

CDS Protein Promoter (2k)

Length: 171 bp

ATGCTCAACTGGTTTTCTTGTTTTTCCGTTTGGTTTCAGGGCTCAGAGCAGCATAGTTTCTATGAGCTAATTGTAAACAAGGCAAGGGGCAAAAGTGGACCGCTTTTTCATTTTGATGTACATGAGGATGTGCGAACAATTGCTGATGCTACAATTAATAGAGAAGGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000160 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009314 GO:0009416 GO:0009628 GO:0009637 GO:0009639 GO:0009719 GO:0009723 GO:0009725 GO:0009755 GO:0009873 GO:0009892 GO:0009987 GO:0010033 GO:0010099 GO:0010114 GO:0010467 GO:0010468 GO:0010605 GO:0010608 GO:0010629 GO:0014070 GO:0016070 GO:0016441 GO:0016458 GO:0019222 GO:0023052 GO:0031047 GO:0031050 GO:0032870 GO:0034641 GO:0035194 GO:0035195 GO:0035196 GO:0035556 GO:0040029 GO:0042221 GO:0042752 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043331 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0048519 GO:0048580 GO:0048583 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051239 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0070918 GO:0071310 GO:0071359 GO:0071369 GO:0071407 GO:0071495 GO:0071704 GO:0090304 GO:1901360 GO:1901698 GO:1901699 GO:2000026 GO:2000030

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

XAP5

Protein Analysis

56

Amino Acids

6.52

Weight (kDa)

5.79

Isoelectric Point (pI)

27.1

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
XAP5	PF04921	17 - 48	2.8e-06	XAP5, circadian clock regulator C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0000779)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g29862
rosa_chinensis	RchiOBHm_Chr1g0313641 RchiOBHm_Chr4g0408161 RchiOBHm_Chr4g0408171 RchiOBHm_Chr4g0437611 RchiOBHm_Chr4g0437621 RchiOBHm_Chr4g0444671 RchiOBHm_Chr5g0045021 RchiOBHm_Chr5g0070121 RchiOBHm_Chr5g0082551 RchiOBHm_Chr6g0247501 RchiOBHm_Chr6g0271311 RchiOBHm_Chr6g0290811 RchiOBHm_Chr6g0310571
rosa_laevigata	RLG00000004718 RLG00000008552 RLG00000015595
rosa_multiflora	Rmu_co8342433.1_g000001 Rmu_sc0000147.1_g000080 Rmu_sc0000391.1_g000018 Rmu_sc0000753.1_g000021 Rmu_sc0000870.1_g000071 Rmu_sc0000870.1_g000072 Rmu_sc0001648.1_g000026 Rmu_sc0001648.1_g000043 Rmu_sc0001972.1_g000009 Rmu_sc0002109.1_g000009 Rmu_sc0003340.1_g000008 Rmu_sc0003340.1_g000009 Rmu_sc0004874.1_g000014 Rmu_sc0005823.1_g000009 Rmu_sc0005941.1_g000006 Rmu_sc0009850.1_g000015 Rmu_sc0015511.1_g000012
rosa_roxburghii	Rroxscaffold_1G00034320 Rroxscaffold_1G00036130 Rroxscaffold_1G00043440 Rroxscaffold_1G00043450 Rroxscaffold_1G00050660 Rroxscaffold_1G00050670 Rroxscaffold_1G00066940 Rroxscaffold_2G00094100 Rroxscaffold_2G00120240 Rroxscaffold_4G00287900 Rroxscaffold_4G00287910 Rroxscaffold_4G00290700 Rroxscaffold_4G00290710 Rroxscaffold_4G00298640 Rroxscaffold_4G00308540 Rroxscaffold_5G00369420 Rroxscaffold_7G00217900
rosa_rugosa	Rorug06G0077100
rosa_samantha	Rh1AG005600 Rh1AG005700 Rh1BG433000 Rh1DG003900 Rh2CG286600 Rh3AG243900 Rh3BG368800 Rh5AG301800 Rh5BG309500 Rh5CG501500 Rh5CG501600 Rh5DG320200 Rh6AG179500 Rh6CG338800 Rh6CG405000 Rh6DG092100 Rh7AG294100 Rh7CG239600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	101
AfaI	GTAC	1 cut(s)	120
AluBI	AGCT	1 cut(s)	67
AluI	AGCT	1 cut(s)	67
ApeKI	GCWGC	1 cut(s)	49
AseI	ATTAAT	1 cut(s)	156
AspS9I	GGNCC	1 cut(s)	98
AvaII	GGWCC	1 cut(s)	98
BanII	GRGCYC	1 cut(s)	44
BbvI	GCAGC	1 cut(s)	61
BisI	GCNGC	1 cut(s)	50
BlsI	GCNGC	1 cut(s)	51
Bme18I	GGWCC	1 cut(s)	98
BmgT120I	GGNCC	1 cut(s)	98
BmsI	GCATC	1 cut(s)	136
Bse1I	ACTGG	1 cut(s)	14
BseGI	GGATG	1 cut(s)	133
BseMII	CTCAG	1 cut(s)	57
BseNI	ACTGG	1 cut(s)	14
BseXI	GCAGC	1 cut(s)	61
Bsp1286I	GDGCHC	1 cut(s)	44
Bsp1407I	TGTACA	1 cut(s)	118
BspACI	CCGC	1 cut(s)	101
BspCNI	CTCAG	1 cut(s)	56
BsrGI	TGTACA	1 cut(s)	118
BsrI	ACTGG	1 cut(s)	14
BstAUI	TGTACA	1 cut(s)	118
BstDEI	CTNAG	1 cut(s)	43
BstF5I	GGATG	1 cut(s)	133
BstV1I	GCAGC	1 cut(s)	61
BtsCI	GGATG	1 cut(s)	133
Cfr13I	GGNCC	1 cut(s)	98
Csp6I	GTAC	1 cut(s)	119
CviAII	CATG	1 cut(s)	122
CviJI	RGCY	2 cut(s)	42, 67
CviKI_1	RGCY	2 cut(s)	42, 67
CviQI	GTAC	1 cut(s)	119
DdeI	CTNAG	1 cut(s)	43
Eco24I	GRGCYC	1 cut(s)	44
Eco47I	GGWCC	1 cut(s)	98
EcoT38I	GRGCYC	1 cut(s)	44
FaeI	CATG	1 cut(s)	125
FaiI	YATR	3 cut(s)	54, 63, 123
FatI	CATG	1 cut(s)	121
Fnu4HI	GCNGC	1 cut(s)	50
FokI	GGATG	1 cut(s)	140
FriOI	GRGCYC	1 cut(s)	44
Fsp4HI	GCNGC	1 cut(s)	50
GluI	GCNGC	1 cut(s)	50
Hin1II	CATG	1 cut(s)	125
Hpy166II	GTNNAC	2 cut(s)	76, 98
Hpy188I	TCNGA	1 cut(s)	46
Hpy8I	GTNNAC	2 cut(s)	76, 98
HpyAV	CCTTC	1 cut(s)	158
HpyF3I	CTNAG	1 cut(s)	43
Hsp92II	CATG	1 cut(s)	125
LpnPI	CCDG	1 cut(s)	23
Lsp1109I	GCAGC	1 cut(s)	61
LweI	GCATC	1 cut(s)	136
MfeI	CAATTG	1 cut(s)	138
MhlI	GDGCHC	1 cut(s)	44
MluCI	AATT	3 cut(s)	69, 138, 153
MnlI	CCTC	1 cut(s)	118
MseI	TTAA	1 cut(s)	156
MslI	CAYNNNNRTG	2 cut(s)	114, 126
MunI	CAATTG	1 cut(s)	138
NlaIII	CATG	1 cut(s)	125
PkrI	GCNGC	1 cut(s)	51
PshBI	ATTAAT	1 cut(s)	156
PspPI	GGNCC	1 cut(s)	98
RsaI	GTAC	1 cut(s)	120
RsaNI	GTAC	1 cut(s)	119
RseI	CAYNNNNRTG	2 cut(s)	114, 126
SaqAI	TTAA	1 cut(s)	156
SatI	GCNGC	1 cut(s)	50
Sau96I	GGNCC	1 cut(s)	98
SduI	GDGCHC	1 cut(s)	44
SetI	ASST	1 cut(s)	69
SfaNI	GCATC	1 cut(s)	136
SgeI	CNNG	6 cut(s)	22, 30, 50, 91, 96, 134
SinI	GGWCC	1 cut(s)	98
SmiMI	CAYNNNNRTG	2 cut(s)	114, 126
Sse9I	AATT	3 cut(s)	69, 138, 153
SsiI	CCGC	1 cut(s)	101
TasI	AATT	3 cut(s)	69, 138, 153
TatI	WGTACW	1 cut(s)	118
Tru1I	TTAA	1 cut(s)	156
Tru9I	TTAA	1 cut(s)	156
TseI	GCWGC	1 cut(s)	49
TspDTI	ATGAA	1 cut(s)	98
TspGWI	ACGGA	1 cut(s)	16
VpaK11BI	GGWCC	1 cut(s)	98
VspI	ATTAAT	1 cut(s)	156

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.