Rroxscaffold_4G00308540

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0000779
Physical Location & Seq
Forward (+)
30091317 .. 30093746
2430 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00308540.1

Sequence Viewer

Length: 510 bp
ATGGCACTCGCAAGTAGGCCGATTAGTACGAAACCCCCATATTATGTTATGGGTGCAACTATTGCCATTAGCACAGTAATCGGGCCTACTTCTAATGACTCGGCAAGTTACGCTGGTGTGATCTCCGGTGGATATTACAGCGCTCCTTCTTATCATCATCATGGTAGCTCTACCTACACAACTTTTACCATGCCGAAGTTTACCCAATTTTCATTGCAACCAAGCTACCCACCACCACCACAACCTTCCCAAACAATCATCAATTGGTACGTTTTTCCTCACCAATTTCCACATCTTCCTGCAAATCACGCTCAGTGGAGTGGAAAATGTCCCCAATTATCAAATCCAGTGGTGACTAATGAAGAACCTTCTTCAATTTCTTTTGAACTTGATATGGGTCACTGGTTAGAATCCAAAATTTTTACTACACAAGTGGGTGTGGGGGATGAACAAGAGGCAGAGTCTCAAATTCATGGTATTAATTTAAAATCAGTGGTCCAACTGTCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

169

Amino Acids

18.49

Weight (kDa)

6.01

Isoelectric Point (pI)

48.93

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000779)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g29862
rosa_chinensis RchiOBHm_Chr1g0313641 RchiOBHm_Chr4g0408161 RchiOBHm_Chr4g0408171 RchiOBHm_Chr4g0437611 RchiOBHm_Chr4g0437621 RchiOBHm_Chr4g0444671 RchiOBHm_Chr5g0045021 RchiOBHm_Chr5g0070121 RchiOBHm_Chr5g0082551 RchiOBHm_Chr6g0247501 RchiOBHm_Chr6g0271311 RchiOBHm_Chr6g0290811 RchiOBHm_Chr6g0310571
rosa_laevigata RLG00000004718 RLG00000008552 RLG00000015595
rosa_multiflora Rmu_co8342433.1_g000001 Rmu_sc0000147.1_g000080 Rmu_sc0000391.1_g000018 Rmu_sc0000753.1_g000021 Rmu_sc0000870.1_g000071 Rmu_sc0000870.1_g000072 Rmu_sc0001648.1_g000026 Rmu_sc0001648.1_g000043 Rmu_sc0001972.1_g000009 Rmu_sc0002109.1_g000009 Rmu_sc0003340.1_g000008 Rmu_sc0003340.1_g000009 Rmu_sc0004874.1_g000014 Rmu_sc0005823.1_g000009 Rmu_sc0005941.1_g000006 Rmu_sc0009850.1_g000015 Rmu_sc0015511.1_g000012
rosa_roxburghii Rroxscaffold_1G00034320 Rroxscaffold_1G00036130 Rroxscaffold_1G00043440 Rroxscaffold_1G00043450 Rroxscaffold_1G00050660 Rroxscaffold_1G00050670 Rroxscaffold_1G00066940 Rroxscaffold_2G00094100 Rroxscaffold_2G00120240 Rroxscaffold_4G00287900 Rroxscaffold_4G00287910 Rroxscaffold_4G00290700 Rroxscaffold_4G00290710 Rroxscaffold_4G00298640 Rroxscaffold_4G00308540 Rroxscaffold_5G00369420 Rroxscaffold_7G00217900
rosa_rugosa Rorug06G0077100
rosa_samantha Rh1AG005600 Rh1AG005700 Rh1BG433000 Rh1DG003900 Rh2CG286600 Rh3AG243900 Rh3BG368800 Rh5AG301800 Rh5BG309500 Rh5CG501500 Rh5CG501600 Rh5DG320200 Rh6AG179500 Rh6CG338800 Rh6CG405000 Rh6DG092100 Rh7AG294100 Rh7CG239600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 2 cut(s) 417, 468
AfaI GTAC 2 cut(s) 28, 269
AfeI AGCGCT 1 cut(s) 142
AgsI TTSAA 2 cut(s) 375, 386
AluBI AGCT 2 cut(s) 168, 225
AluI AGCT 2 cut(s) 168, 225
Alw26I GTCTC 1 cut(s) 468
Aor51HI AGCGCT 1 cut(s) 142
AoxI GGCC 2 cut(s) 17, 83
ApoI RAATTY 2 cut(s) 417, 468
AseI ATTAAT 1 cut(s) 480
AspLEI GCGC 1 cut(s) 143
AspS9I GGNCC 2 cut(s) 83, 496
AsuHPI GGTGA 2 cut(s) 272, 364
AvaII GGWCC 1 cut(s) 496
BcgI CGANNNNNNTGC 2 cut(s) 61, 95
BcoDI GTCTC 1 cut(s) 468
BfoI RGCGCY 1 cut(s) 144
Bme18I GGWCC 1 cut(s) 496
BmgT120I GGNCC 2 cut(s) 83, 496
BsaWI WCCGGW 1 cut(s) 125
Bse1I ACTGG 2 cut(s) 347, 407
Bse3DI GCAATG 1 cut(s) 212
BseGI GGATG 1 cut(s) 451
BseMI GCAATG 1 cut(s) 212
BseMII CTCAG 1 cut(s) 326
BseNI ACTGG 2 cut(s) 347, 407
BshFI GGCC 2 cut(s) 19, 85
BsiSI CCGG 1 cut(s) 126
BslFI GGGAC 1 cut(s) 315
BsmAI GTCTC 1 cut(s) 468
BsmFI GGGAC 1 cut(s) 315
BsnI GGCC 2 cut(s) 19, 85
Bsp143I GATC 1 cut(s) 120
BspANI GGCC 2 cut(s) 19, 85
BspCNI CTCAG 1 cut(s) 325
BsrDI GCAATG 1 cut(s) 212
BsrI ACTGG 2 cut(s) 347, 407
BssMI GATC 1 cut(s) 120
Bst4CI ACNGT 2 cut(s) 76, 504
BstAPI GCANNNNNTGC 1 cut(s) 62
BstDEI CTNAG 2 cut(s) 312, 507
BstF5I GGATG 1 cut(s) 451
BstH2I RGCGCY 1 cut(s) 144
BstHHI GCGC 1 cut(s) 143
BstKTI GATC 1 cut(s) 123
BstMAI GTCTC 1 cut(s) 468
BstMBI GATC 1 cut(s) 120
BstMWI GCNNNNNNNGC 3 cut(s) 62, 110, 308
BsuRI GGCC 2 cut(s) 19, 85
BtsCI GGATG 1 cut(s) 451
BtsIMutI CAGTG 4 cut(s) 320, 354, 400, 498
CfoI GCGC 1 cut(s) 143
Cfr13I GGNCC 2 cut(s) 83, 496
Csp6I GTAC 2 cut(s) 27, 268
CspCI CAANNNNNGTGG 2 cut(s) 330, 365
CviAII CATG 3 cut(s) 161, 190, 473
CviJI RGCY 4 cut(s) 19, 85, 168, 225
CviKI_1 RGCY 4 cut(s) 19, 85, 168, 225
CviQI GTAC 2 cut(s) 27, 268
DdeI CTNAG 2 cut(s) 312, 507
DpnI GATC 1 cut(s) 122
DpnII GATC 1 cut(s) 120
DraI TTTAAA 1 cut(s) 486
Eco47I GGWCC 1 cut(s) 496
Eco47III AGCGCT 1 cut(s) 142
FaeI CATG 3 cut(s) 164, 193, 476
FaiI YATR 7 cut(s) 40, 45, 50, 162, 191, 395, 474
FaqI GGGAC 1 cut(s) 315
FatI CATG 3 cut(s) 160, 189, 472
FokI GGATG 1 cut(s) 458
GlaI GCGC 1 cut(s) 142
HaeII RGCGCY 1 cut(s) 144
HaeIII GGCC 2 cut(s) 19, 85
HapII CCGG 1 cut(s) 126
HhaI GCGC 1 cut(s) 143
Hin1II CATG 3 cut(s) 164, 193, 476
Hin6I GCGC 1 cut(s) 141
HinP1I GCGC 1 cut(s) 141
HinfI GANTC 3 cut(s) 98, 410, 461
HpaII CCGG 1 cut(s) 126
HphI GGTGA 2 cut(s) 272, 364
Hpy166II GTNNAC 1 cut(s) 201
Hpy8I GTNNAC 1 cut(s) 201
HpyAV CCTTC 3 cut(s) 156, 255, 378
HpyCH4III ACNGT 2 cut(s) 76, 504
HpyCH4IV ACGT 1 cut(s) 270
HpyCH4V TGCA 3 cut(s) 56, 217, 302
HpyF10VI GCNNNNNNNGC 3 cut(s) 62, 110, 308
HpyF3I CTNAG 2 cut(s) 312, 507
HpySE526I ACGT 1 cut(s) 270
Hsp92II CATG 3 cut(s) 164, 193, 476
HspAI GCGC 1 cut(s) 141
Kzo9I GATC 1 cut(s) 120
LmnI GCTCC 1 cut(s) 148
LpnPI CCDG 5 cut(s) 99, 139, 312, 360, 388
MaeII ACGT 1 cut(s) 270
MaeIII GTNAC 3 cut(s) 107, 352, 398
MalI GATC 1 cut(s) 122
MboI GATC 1 cut(s) 120
MboII GAAGA 3 cut(s) 287, 363, 374
MfeI CAATTG 1 cut(s) 262
MluCI AATT 8 cut(s) 206, 262, 284, 335, 375, 417, 468, 481
MlyI GAGTC 2 cut(s) 92, 470
MnlI CCTC 2 cut(s) 288, 448
MseI TTAA 2 cut(s) 480, 485
MslI CAYNNNNRTG 1 cut(s) 159
MspI CCGG 1 cut(s) 126
MunI CAATTG 1 cut(s) 262
MwoI GCNNNNNNNGC 3 cut(s) 62, 110, 308
NdeII GATC 1 cut(s) 120
NlaIII CATG 3 cut(s) 164, 193, 476
NmeAIII GCCGAG 1 cut(s) 80
NmuCI GTSAC 2 cut(s) 352, 398
PfeI GAWTC 1 cut(s) 410
PleI GAGTC 2 cut(s) 92, 469
PpsI GAGTC 2 cut(s) 92, 469
PshBI ATTAAT 1 cut(s) 480
PspPI GGNCC 2 cut(s) 83, 496
RsaI GTAC 2 cut(s) 28, 269
RsaNI GTAC 2 cut(s) 27, 268
RseI CAYNNNNRTG 1 cut(s) 159
SaqAI TTAA 2 cut(s) 480, 485
Sau3AI GATC 1 cut(s) 120
Sau96I GGNCC 2 cut(s) 83, 496
SchI GAGTC 2 cut(s) 92, 470
SetI ASST 6 cut(s) 170, 176, 227, 247, 273, 370
SinI GGWCC 1 cut(s) 496
SmiMI CAYNNNNRTG 1 cut(s) 159
Sse9I AATT 8 cut(s) 206, 262, 284, 335, 375, 417, 468, 481
TaaI ACNGT 2 cut(s) 76, 504
TaiI ACGT 1 cut(s) 273
TasI AATT 8 cut(s) 206, 262, 284, 335, 375, 417, 468, 481
TfiI GAWTC 1 cut(s) 410
Tru1I TTAA 2 cut(s) 480, 485
Tru9I TTAA 2 cut(s) 480, 485
TscAI CASTG 4 cut(s) 320, 354, 407, 498
TseFI GTSAC 2 cut(s) 352, 398
Tsp45I GTSAC 2 cut(s) 352, 398
TspDTI ATGAA 4 cut(s) 201, 375, 461, 462
TspRI CASTG 4 cut(s) 320, 354, 407, 498
VpaK11BI GGWCC 1 cut(s) 496
VspI ATTAAT 1 cut(s) 480
XapI RAATTY 2 cut(s) 417, 468
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.