Rroxscaffold_4G00290710

Belongs to the peptidase M16 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0000779
Physical Location & Seq
Reverse (-)
11266963 .. 11268321
1359 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00290710.1

Sequence Viewer

Length: 990 bp
ATGGTGATGCTCGTAATTTTGAGAAGATTTCTGCTATGTACCGAAGATAGTAATCTTTCTTGGAATGTCAATTTGGTTGCAGCATGTGTCAAGTTTGGTGGTACAAGCGGTGGCCGCCAAATGTTTGATAACATCTTATGCTCAAACGTGAGCTCATGGAATGTCATACTCTCTGGTTATGTCCAGAATGAAGAACACATGGAGACGTTGATGTTCTTGTGTGCAATTTCAGAATTTGGCACCTTGGCTACTCTAAATGCATGGTTGAATGGTAACTTTCTGTTCTTACCTCTTGAGAACAAAGTGGAGAAAATGAATTTGCTTCTTGCTGATAAGTTGGAGAAACTTGACAAAATTGTGAAAATGTTGCTTGTTGACAATTGGGAGAGATGGAAGTATTTAGTAATTGCTATGAATAAGAATGGTACTAAAGATTTGCATGCGAATTTTCTTGAAAACCATTTGGAGCAATTTGTGAAGTGTTTGCGATATGTTATGTCTACTTGGGCTGCACTTTACACAATGCGAAGTTGGGATTCAAATTCTATTCGAGATGTCAAGGCTAGTGTTGCAAGTGCGATTATTCGGTTGCATTTAAATGAAGCTACTGAATTGATTTTATCAAGTGGCATGAGAGTTTGCTGTTTGCTTTGTAAGAGTACGGACTTTGATGATGATCGAGTTATCTTTACAAGGTTCTCATATGGGGGTTTATCCGTACTTGTTGAAAGTGAGTACTCTTCTTGCTTGATGGGGCCAACTATTGCACGAGACATTGGTGTATATGGTTACGGACCTTCGGATCTGGTAGTTAAGCTTGCGTGTAAGAGGGCCAAAATCAACACAAAGCTTGGAGTATACACAAGAACCTCTAATTACAATGCCAACAATACCGATCAAACAAAGTTCACAAGTTGGTTGCATGTTGATGCGAGATTATATGAGCGAGAAGCTATTTTTAACCATATTGCTGCAGCATGGAATATTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PITH Peptidase_M16 Peptidase_M16_C

Protein Analysis

329

Amino Acids

37.4

Weight (kDa)

7.52

Isoelectric Point (pI)

34.86

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000779)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g29862
rosa_chinensis RchiOBHm_Chr1g0313641 RchiOBHm_Chr4g0408161 RchiOBHm_Chr4g0408171 RchiOBHm_Chr4g0437611 RchiOBHm_Chr4g0437621 RchiOBHm_Chr4g0444671 RchiOBHm_Chr5g0045021 RchiOBHm_Chr5g0070121 RchiOBHm_Chr5g0082551 RchiOBHm_Chr6g0247501 RchiOBHm_Chr6g0271311 RchiOBHm_Chr6g0290811 RchiOBHm_Chr6g0310571
rosa_laevigata RLG00000004718 RLG00000008552 RLG00000015595
rosa_multiflora Rmu_co8342433.1_g000001 Rmu_sc0000147.1_g000080 Rmu_sc0000391.1_g000018 Rmu_sc0000753.1_g000021 Rmu_sc0000870.1_g000071 Rmu_sc0000870.1_g000072 Rmu_sc0001648.1_g000026 Rmu_sc0001648.1_g000043 Rmu_sc0001972.1_g000009 Rmu_sc0002109.1_g000009 Rmu_sc0003340.1_g000008 Rmu_sc0003340.1_g000009 Rmu_sc0004874.1_g000014 Rmu_sc0005823.1_g000009 Rmu_sc0005941.1_g000006 Rmu_sc0009850.1_g000015 Rmu_sc0015511.1_g000012
rosa_roxburghii Rroxscaffold_1G00034320 Rroxscaffold_1G00036130 Rroxscaffold_1G00043440 Rroxscaffold_1G00043450 Rroxscaffold_1G00050660 Rroxscaffold_1G00050670 Rroxscaffold_1G00066940 Rroxscaffold_2G00094100 Rroxscaffold_2G00120240 Rroxscaffold_4G00287900 Rroxscaffold_4G00287910 Rroxscaffold_4G00290700 Rroxscaffold_4G00290710 Rroxscaffold_4G00298640 Rroxscaffold_4G00308540 Rroxscaffold_5G00369420 Rroxscaffold_7G00217900
rosa_rugosa Rorug06G0077100
rosa_samantha Rh1AG005600 Rh1AG005700 Rh1BG433000 Rh1DG003900 Rh2CG286600 Rh3AG243900 Rh3BG368800 Rh5AG301800 Rh5BG309500 Rh5CG501500 Rh5CG501600 Rh5DG320200 Rh6AG179500 Rh6CG338800 Rh6CG405000 Rh6DG092100 Rh7AG294100 Rh7CG239600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 239
AccI GTMKAC 2 cut(s) 500, 858
AciI CCGC 2 cut(s) 108, 115
AclWI GGATC 1 cut(s) 810
AcoI YGGCCR 1 cut(s) 112
AcsI RAATTY 4 cut(s) 233, 316, 445, 541
AfaI GTAC 6 cut(s) 40, 103, 427, 661, 720, 737
AgsI TTSAA 4 cut(s) 268, 455, 540, 728
AjuI GAANNNNNNNTTGG 2 cut(s) 56, 88
AluBI AGCT 5 cut(s) 153, 605, 817, 850, 953
AluI AGCT 5 cut(s) 153, 605, 817, 850, 953
Alw21I GWGCWC 1 cut(s) 155
Alw26I GTCTC 2 cut(s) 197, 765
AlwI GGATC 1 cut(s) 810
AoxI GGCC 3 cut(s) 112, 755, 831
ApeKI GCWGC 4 cut(s) 80, 509, 971, 974
ApoI RAATTY 4 cut(s) 233, 316, 445, 541
AspS9I GGNCC 3 cut(s) 755, 794, 831
AsuHPI GGTGA 1 cut(s) 16
AvaII GGWCC 1 cut(s) 794
BanI GGYRCC 1 cut(s) 239
BanII GRGCYC 1 cut(s) 155
BauI CACGAG 1 cut(s) 768
Bbv12I GWGCWC 1 cut(s) 155
BbvI GCAGC 4 cut(s) 92, 496, 958, 986
BccI CCATC 2 cut(s) 384, 745
BcoDI GTCTC 2 cut(s) 197, 765
BfaI CTAG 1 cut(s) 564
BfmI CTRYAG 1 cut(s) 972
BisI GCNGC 5 cut(s) 81, 115, 510, 972, 975
BlsI GCNGC 5 cut(s) 82, 116, 511, 973, 976
BmcAI AGTACT 1 cut(s) 737
Bme18I GGWCC 1 cut(s) 794
BmgT120I GGNCC 3 cut(s) 755, 794, 831
BmiI GGNNCC 2 cut(s) 241, 756
BmsI GCATC 1 cut(s) 919
BpuEI CTTGAG 1 cut(s) 314
BsaBI GATNNNNATC 2 cut(s) 51, 675
BsaJI CCNNGG 1 cut(s) 243
Bse8I GATNNNNATC 2 cut(s) 51, 675
BseDI CCNNGG 1 cut(s) 243
BseJI GATNNNNATC 2 cut(s) 51, 675
BseXI GCAGC 4 cut(s) 92, 496, 958, 986
BsgI GTGCAG 1 cut(s) 495
BshFI GGCC 3 cut(s) 114, 757, 833
BshNI GGYRCC 1 cut(s) 239
BsiHKAI GWGCWC 1 cut(s) 155
BsmAI GTCTC 2 cut(s) 197, 765
BsmBI CGTCTC 1 cut(s) 197
BsnI GGCC 3 cut(s) 114, 757, 833
Bsp1286I GDGCHC 1 cut(s) 155
Bsp143I GATC 3 cut(s) 676, 802, 895
BspACI CCGC 2 cut(s) 108, 115
BspANI GGCC 3 cut(s) 114, 757, 833
BspLI GGNNCC 2 cut(s) 241, 756
BspMAI CTGCAG 1 cut(s) 976
BspPI GGATC 1 cut(s) 810
BspT107I GGYRCC 1 cut(s) 239
BssECI CCNNGG 1 cut(s) 243
BssMI GATC 3 cut(s) 676, 802, 895
BssNAI GTATAC 1 cut(s) 859
BssSI CACGAG 1 cut(s) 768
BssT1I CCWWGG 1 cut(s) 243
Bst1107I GTATAC 1 cut(s) 859
Bst2BI CACGAG 1 cut(s) 768
Bst6I CTCTTC 1 cut(s) 745
BstC8I GCNNGC 2 cut(s) 441, 819
BstKTI GATC 3 cut(s) 679, 805, 898
BstMAI GTCTC 2 cut(s) 197, 765
BstMBI GATC 3 cut(s) 676, 802, 895
BstMWI GCNNNNNNNGC 2 cut(s) 114, 569
BstNSI RCATGY 3 cut(s) 87, 443, 926
BstSFI CTRYAG 1 cut(s) 972
BstV1I GCAGC 4 cut(s) 92, 496, 958, 986
BstX2I RGATCY 1 cut(s) 802
BstYI RGATCY 1 cut(s) 802
BstZ17I GTATAC 1 cut(s) 859
BsuRI GGCC 3 cut(s) 114, 757, 833
Cac8I GCNNGC 2 cut(s) 441, 819
Cfr13I GGNCC 3 cut(s) 755, 794, 831
Csp6I GTAC 6 cut(s) 39, 102, 426, 660, 719, 736
CspCI CAANNNNNGTGG 2 cut(s) 79, 114
CviAII CATG 8 cut(s) 84, 156, 199, 261, 440, 631, 923, 978
CviQI GTAC 6 cut(s) 39, 102, 426, 660, 719, 736
DpnI GATC 3 cut(s) 678, 804, 897
DpnII GATC 3 cut(s) 676, 802, 895
DraI TTTAAA 1 cut(s) 597
EaeI YGGCCR 1 cut(s) 112
Eam1104I CTCTTC 1 cut(s) 745
EarI CTCTTC 1 cut(s) 745
Ecl136II GAGCTC 1 cut(s) 153
Eco130I CCWWGG 1 cut(s) 243
Eco24I GRGCYC 1 cut(s) 155
Eco47I GGWCC 1 cut(s) 794
Eco53kI GAGCTC 1 cut(s) 153
EcoICRI GAGCTC 1 cut(s) 153
EcoT14I CCWWGG 1 cut(s) 243
EcoT22I ATGCAT 1 cut(s) 262
EcoT38I GRGCYC 1 cut(s) 155
ErhI CCWWGG 1 cut(s) 243
Esp3I CGTCTC 1 cut(s) 197
FaeI CATG 8 cut(s) 87, 159, 202, 264, 443, 634, 926, 981
FatI CATG 8 cut(s) 83, 155, 198, 260, 439, 630, 922, 977
FauNDI CATATG 1 cut(s) 703
FblI GTMKAC 2 cut(s) 500, 858
Fnu4HI GCNGC 5 cut(s) 81, 115, 510, 972, 975
FriOI GRGCYC 1 cut(s) 155
Fsp4HI GCNGC 5 cut(s) 81, 115, 510, 972, 975
FspBI CTAG 1 cut(s) 564
GluI GCNGC 5 cut(s) 81, 115, 510, 972, 975
HaeIII GGCC 3 cut(s) 114, 757, 833
Hin1II CATG 8 cut(s) 87, 159, 202, 264, 443, 634, 926, 981
HincII GTYRAC 1 cut(s) 376
HindII GTYRAC 1 cut(s) 376
HindIII AAGCTT 2 cut(s) 815, 848
HinfI GANTC 1 cut(s) 536
HphI GGTGA 1 cut(s) 16
Hpy166II GTNNAC 4 cut(s) 376, 501, 859, 909
Hpy188I TCNGA 2 cut(s) 232, 802
Hpy188III TCNNGA 4 cut(s) 184, 293, 452, 551
Hpy8I GTNNAC 4 cut(s) 376, 501, 859, 909
HpyAV CCTTC 1 cut(s) 807
HpyCH4IV ACGT 2 cut(s) 147, 206
HpyF10VI GCNNNNNNNGC 2 cut(s) 114, 569
HpySE526I ACGT 2 cut(s) 147, 206
Hsp92II CATG 8 cut(s) 87, 159, 202, 264, 443, 634, 926, 981
Kzo9I GATC 3 cut(s) 676, 802, 895
LmnI GCTCC 1 cut(s) 466
LpnPI CCDG 3 cut(s) 159, 197, 791
Lsp1109I GCAGC 4 cut(s) 92, 496, 958, 986
LweI GCATC 1 cut(s) 919
MaeI CTAG 1 cut(s) 564
MaeII ACGT 2 cut(s) 147, 206
MaeIII GTNAC 2 cut(s) 272, 788
MalI GATC 3 cut(s) 678, 804, 897
MboI GATC 3 cut(s) 676, 802, 895
MboII GAAGA 4 cut(s) 36, 56, 203, 732
MfeI CAATTG 1 cut(s) 379
MflI RGATCY 1 cut(s) 802
MhlI GDGCHC 1 cut(s) 155
MmeI TCCRAC 1 cut(s) 318
MnlI CCTC 3 cut(s) 300, 822, 880
Mph1103I ATGCAT 1 cut(s) 262
MseI TTAA 4 cut(s) 596, 813, 960, 988
MslI CAYNNNNRTG 2 cut(s) 597, 927
MunI CAATTG 1 cut(s) 379
MwoI GCNNNNNNNGC 2 cut(s) 114, 569
NdeI CATATG 1 cut(s) 703
NdeII GATC 3 cut(s) 676, 802, 895
NlaIII CATG 8 cut(s) 87, 159, 202, 264, 443, 634, 926, 981
NlaIV GGNNCC 2 cut(s) 241, 756
NsiI ATGCAT 1 cut(s) 262
NspI RCATGY 3 cut(s) 87, 443, 926
PaeI GCATGC 1 cut(s) 443
PfeI GAWTC 1 cut(s) 536
PkrI GCNGC 5 cut(s) 82, 116, 511, 973, 976
Psp124BI GAGCTC 1 cut(s) 155
PspN4I GGNNCC 2 cut(s) 241, 756
PspPI GGNCC 3 cut(s) 755, 794, 831
PstI CTGCAG 1 cut(s) 976
PsuI RGATCY 1 cut(s) 802
RsaI GTAC 6 cut(s) 40, 103, 427, 661, 720, 737
RsaNI GTAC 6 cut(s) 39, 102, 426, 660, 719, 736
RseI CAYNNNNRTG 2 cut(s) 597, 927
SacI GAGCTC 1 cut(s) 155
SaqAI TTAA 4 cut(s) 596, 813, 960, 988
SatI GCNGC 5 cut(s) 81, 115, 510, 972, 975
Sau3AI GATC 3 cut(s) 676, 802, 895
Sau96I GGNCC 3 cut(s) 755, 794, 831
ScaI AGTACT 1 cut(s) 737
SduI GDGCHC 1 cut(s) 155
SfaNI GCATC 1 cut(s) 919
SfcI CTRYAG 1 cut(s) 972
SinI GGWCC 1 cut(s) 794
SmiI ATTTAAAT 1 cut(s) 597
SmiMI CAYNNNNRTG 2 cut(s) 597, 927
SmlI CTYRAG 1 cut(s) 293
SmoI CTYRAG 1 cut(s) 293
SphI GCATGC 1 cut(s) 443
SsiI CCGC 2 cut(s) 108, 115
SspI AATATT 1 cut(s) 985
SspMI CTAG 1 cut(s) 564
SstI GAGCTC 1 cut(s) 155
StyI CCWWGG 1 cut(s) 243
SwaI ATTTAAAT 1 cut(s) 597
TaiI ACGT 2 cut(s) 150, 209
TaqI TCGA 2 cut(s) 550, 679
TatI WGTACW 1 cut(s) 735
TauI GCSGC 1 cut(s) 117
TfiI GAWTC 1 cut(s) 536
Tru1I TTAA 4 cut(s) 596, 813, 960, 988
Tru9I TTAA 4 cut(s) 596, 813, 960, 988
TseI GCWGC 4 cut(s) 80, 509, 971, 974
TspDTI ATGAA 4 cut(s) 204, 329, 428, 615
TspGWI ACGGA 3 cut(s) 677, 706, 807
VpaK11BI GGWCC 1 cut(s) 794
XapI RAATTY 4 cut(s) 233, 316, 445, 541
XceI RCATGY 3 cut(s) 87, 443, 926
XmiI GTMKAC 2 cut(s) 500, 858
XspI CTAG 1 cut(s) 564
ZrmI AGTACT 1 cut(s) 737
Zsp2I ATGCAT 1 cut(s) 262
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.