Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000779

Physical Location & Seq

Genomic Coordinates Forward (+)

30743511 .. 30746385

Gene Structure 2875 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ37933

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1503 bp

ATGGAGATGGCTGCTTATATGGTGAAGAATGAAAGTTTTGGGAGTGAAATTGGCAGAAATGGGGAACCCGCACTTCTAGGGTCGTTATCCCAGCTACCGTCAGCCATCAAATCAGTGAGCTCGCTGCTGTCACCGCCAATTCAATCTTTTCCAAGATCAACTCAGTTTATGTCTCCAACTAGAGGTCTTATACTAGAGAAGGGAGATGCTGACAAAAAGAAGACTGGTGAACTTACAGAGCTTGATAATATATCGATGATGGTAGGAAATTACTTTCAGTATGCTTTACCTAAGTGCTGTGGGTATGGAAAGGATATTGGTACATGTTCTGTGGTGAATGTTTTTAATGCATTGTGTGTAATGCTCACGCATTACATTGAGAGTCCAAAGAAGATTAGTCACTATGTACTGCAACTATGCTTGTCTGGATTTGATAAGAAGGTTCGTGATAAAGGTAGTACTCTCTTAACAAATGAACTTTTTATGGAGTACTTTGCAGGGACAATGGCATCTGGTAATAGCTTGAAATTTACCTTTTCACTAATAATGACTTTGATTGAATTATGGAGTTATGGATATGTTGAGAAAAATATAAGATGGTTTACCAAAATTTCAGTGATTAGTTTTGGAAATGGATGGTTCGATTTCCACCATGATCATGGGCTTATCTCTTGTGGCATTGAATTCAATAGTTTCTTGGTGAATAGAAATGATGGACACATAGTTGTTCTATGCCCCAACATGTTCAAAGATGGGTTTAATTTGGAGTATCAGTGGGAAACAAAAGGATCTGGGAATTTGCTTATGCTAGCTTGTCCTCTGCATGTGAAGCTTCTTAAGAATGATGTACTGTTCTATGTGTTCGTAAAGGAGTTGGAGAAAGCACTTGCTATTTTGCTTGTGAGTTTGCTCAAAATTACGGCAGATATTAGAGAGCAGATTGAGCTTCTTCATGGGCAAGCAAAAAGGGCAGAGTTGTATATTGACCTTAAAGAGATGAAAATGAGAGAAGAGCTTTTGGTATTGATGGGGAGCAACAATGAGAGGAACAAGAAGAACAATGGGTTTGTAGACTTGGTTATTGAGGAAATTATTGAATTTCTCCAGATCAACTTAGAGTTCTCATCTTCGAGGTACTCTTTTGGTCTAGTTGTTCCAATTACTACTATTGCTATTCAATTAGTTGGAAAGAAGCATATCTTGGATCTATTGCTAGCTACGCTATTTGGGAATGTCCCACATGTTTTTGGAACTTTGAGTGTTATTATTCTTGTCAGTAAACTAAATCACAAGAAGGAATCACTTGATGTTACTTGCCTTGCGACCATCTTCTTTGTTAATTATGTATTATCTCTGCATATGCAACTTGGGGAGAAATGTATGCCACCTCAAATAGTGGAGTTTACTCAACATTACATAACAAAGAAAGATTTGGTCACTTTTTGGATTTGGGTTCCTACACTGTCAGTTCAAAAGTTTGGATTCTTAACTCGCATGGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002237 GO:0002682 GO:0002683 GO:0003674 GO:0003824 GO:0004842 GO:0005102 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005886 GO:0006464 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009608 GO:0009609 GO:0009610 GO:0009617 GO:0009620 GO:0009877 GO:0009987 GO:0010033 GO:0010941 GO:0016020 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0032446 GO:0033612 GO:0036211 GO:0036377 GO:0042221 GO:0042742 GO:0042981 GO:0043066 GO:0043067 GO:0043069 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044403 GO:0044419 GO:0044424 GO:0044444 GO:0044464 GO:0048519 GO:0048523 GO:0048580 GO:0048583 GO:0048585 GO:0050776 GO:0050777 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051239 GO:0051704 GO:0051707 GO:0060548 GO:0061630 GO:0061659 GO:0065007 GO:0070647 GO:0070696 GO:0071704 GO:0071944 GO:0098542 GO:0140096 GO:1901564 GO:2000026 GO:2000028 GO:2000241

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Arm U-box

Protein Analysis

500

Amino Acids

56.58

Weight (kDa)

7.58

Isoelectric Point (pI)

41.63

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000779)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g29862
rosa_chinensis	RchiOBHm_Chr1g0313641 RchiOBHm_Chr4g0408161 RchiOBHm_Chr4g0408171 RchiOBHm_Chr4g0437611 RchiOBHm_Chr4g0437621 RchiOBHm_Chr4g0444671 RchiOBHm_Chr5g0045021 RchiOBHm_Chr5g0070121 RchiOBHm_Chr5g0082551 RchiOBHm_Chr6g0247501 RchiOBHm_Chr6g0271311 RchiOBHm_Chr6g0290811 RchiOBHm_Chr6g0310571
rosa_laevigata	RLG00000004718 RLG00000008552 RLG00000015595
rosa_multiflora	Rmu_co8342433.1_g000001 Rmu_sc0000147.1_g000080 Rmu_sc0000391.1_g000018 Rmu_sc0000753.1_g000021 Rmu_sc0000870.1_g000071 Rmu_sc0000870.1_g000072 Rmu_sc0001648.1_g000026 Rmu_sc0001648.1_g000043 Rmu_sc0001972.1_g000009 Rmu_sc0002109.1_g000009 Rmu_sc0003340.1_g000008 Rmu_sc0003340.1_g000009 Rmu_sc0004874.1_g000014 Rmu_sc0005823.1_g000009 Rmu_sc0005941.1_g000006 Rmu_sc0009850.1_g000015 Rmu_sc0015511.1_g000012
rosa_roxburghii	Rroxscaffold_1G00034320 Rroxscaffold_1G00036130 Rroxscaffold_1G00043440 Rroxscaffold_1G00043450 Rroxscaffold_1G00050660 Rroxscaffold_1G00050670 Rroxscaffold_1G00066940 Rroxscaffold_2G00094100 Rroxscaffold_2G00120240 Rroxscaffold_4G00287900 Rroxscaffold_4G00287910 Rroxscaffold_4G00290700 Rroxscaffold_4G00290710 Rroxscaffold_4G00298640 Rroxscaffold_4G00308540 Rroxscaffold_5G00369420 Rroxscaffold_7G00217900
rosa_rugosa	Rorug06G0077100
rosa_samantha	Rh1AG005600 Rh1AG005700 Rh1BG433000 Rh1DG003900 Rh2CG286600 Rh3AG243900 Rh3BG368800 Rh5AG301800 Rh5BG309500 Rh5CG501500 Rh5CG501600 Rh5DG320200 Rh6AG179500 Rh6CG338800 Rh6CG405000 Rh6DG092100 Rh7AG294100 Rh7CG239600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	1071
AciI	CCGC	2 cut(s)	69, 134
AclWI	GGATC	2 cut(s)	796, 1212
AcsI	RAATTY	5 cut(s)	527, 609, 683, 796, 1097
AfaI	GTAC	6 cut(s)	322, 408, 460, 491, 849, 1136
AfiI	CCNNNNNNNGG	1 cut(s)	182
AflII	CTTAAG	1 cut(s)	836
AflIII	ACRYGT	3 cut(s)	323, 741, 1240
AgsI	TTSAA	9 cut(s)	143, 526, 560, 683, 688, 748, 1097, 1178, 1472
AjuI	GAANNNNNNNTTGG	2 cut(s)	1184, 1216
AluBI	AGCT	9 cut(s)	94, 120, 241, 522, 812, 832, 946, 1015, 1217
AluI	AGCT	9 cut(s)	94, 120, 241, 522, 812, 832, 946, 1015, 1217
Alw21I	GWGCWC	1 cut(s)	122
Alw26I	GTCTC	1 cut(s)	177
AlwI	GGATC	2 cut(s)	796, 1212
ApeKI	GCWGC	2 cut(s)	11, 124
ApoI	RAATTY	5 cut(s)	527, 609, 683, 796, 1097
AsuHPI	GGTGA	5 cut(s)	34, 123, 239, 346, 712
AsuNHI	GCTAGC	2 cut(s)	808, 1213
BanII	GRGCYC	1 cut(s)	122
BbsI	GAAGAC	1 cut(s)	227
Bbv12I	GWGCWC	1 cut(s)	122
BbvI	GCAGC	1 cut(s)	111
BccI	CCATC	8 cut(s)	113, 253, 591, 630, 707, 746, 1021, 1334
BceAI	ACGGC	1 cut(s)	936
BclI	TGATCA	1 cut(s)	655
BcoDI	GTCTC	1 cut(s)	177
BfaI	CTAG	6 cut(s)	77, 180, 194, 809, 1148, 1214
BfrI	CTTAAG	1 cut(s)	836
BisI	GCNGC	2 cut(s)	12, 125
BlsI	GCNGC	2 cut(s)	13, 126
BmcAI	AGTACT	2 cut(s)	460, 491
BmiI	GGNNCC	2 cut(s)	66, 1455
BmsI	GCATC	2 cut(s)	196, 518
BmtI	GCTAGC	2 cut(s)	812, 1217
BpiI	GAAGAC	1 cut(s)	227
BpmI	CTGGAG	1 cut(s)	1088
Bsa29I	ATCGAT	1 cut(s)	254
BsaXI	ACNNNNNCTCC	2 cut(s)	758, 788
Bsc4I	CCNNNNNNNGG	1 cut(s)	182
Bse1I	ACTGG	1 cut(s)	229
BseCI	ATCGAT	1 cut(s)	254
BseGI	GGATG	1 cut(s)	641
BseLI	CCNNNNNNNGG	1 cut(s)	182
BseMII	CTCAG	1 cut(s)	176
BseNI	ACTGG	1 cut(s)	229
BseXI	GCAGC	1 cut(s)	111
BseYI	CCCAGC	1 cut(s)	90
BshVI	ATCGAT	1 cut(s)	254
BsiHKAI	GWGCWC	1 cut(s)	122
BslFI	GGGAC	2 cut(s)	514, 1220
BslI	CCNNNNNNNGG	1 cut(s)	182
BsmAI	GTCTC	1 cut(s)	177
BsmFI	GGGAC	2 cut(s)	514, 1220
Bsp1286I	GDGCHC	1 cut(s)	122
Bsp143I	GATC	5 cut(s)	155, 655, 788, 1107, 1204
BspACI	CCGC	2 cut(s)	69, 134
BspCNI	CTCAG	1 cut(s)	175
BspDI	ATCGAT	1 cut(s)	254
BspLI	GGNNCC	2 cut(s)	66, 1455
BspOI	GCTAGC	2 cut(s)	812, 1217
BspPI	GGATC	2 cut(s)	796, 1212
BspQI	GCTCTTC	1 cut(s)	1005
BspTI	CTTAAG	1 cut(s)	836
BsrI	ACTGG	1 cut(s)	229
BssMI	GATC	5 cut(s)	155, 655, 788, 1107, 1204
Bst4CI	ACNGT	3 cut(s)	99, 852, 1464
Bst6I	CTCTTC	1 cut(s)	1005
BstAFI	CTTAAG	1 cut(s)	836
BstC8I	GCNNGC	4 cut(s)	122, 810, 960, 1215
BstDEI	CTNAG	3 cut(s)	162, 291, 1114
BstF5I	GGATG	1 cut(s)	641
BstKTI	GATC	5 cut(s)	158, 658, 791, 1110, 1207
BstMAI	GTCTC	1 cut(s)	177
BstMBI	GATC	5 cut(s)	155, 655, 788, 1107, 1204
BstMWI	GCNNNNNNNGC	5 cut(s)	133, 829, 943, 968, 1219
BstNSI	RCATGY	4 cut(s)	327, 745, 827, 1244
BstV1I	GCAGC	1 cut(s)	111
BstV2I	GAAGAC	1 cut(s)	227
BstX2I	RGATCY	2 cut(s)	788, 1204
BstXI	CCANNNNNNTGG	1 cut(s)	659
BstYI	RGATCY	2 cut(s)	788, 1204
Bsu15I	ATCGAT	1 cut(s)	254
BsuTUI	ATCGAT	1 cut(s)	254
BtsCI	GGATG	1 cut(s)	641
BtsIMutI	CAGTG	4 cut(s)	120, 621, 779, 1460
Cac8I	GCNNGC	4 cut(s)	122, 810, 960, 1215
ClaI	ATCGAT	1 cut(s)	254
Csp6I	GTAC	6 cut(s)	321, 407, 459, 490, 848, 1135
CviAII	CATG	8 cut(s)	324, 653, 659, 742, 824, 953, 1241, 1495
CviQI	GTAC	6 cut(s)	321, 407, 459, 490, 848, 1135
DdeI	CTNAG	3 cut(s)	162, 291, 1114
DpnI	GATC	5 cut(s)	157, 657, 790, 1109, 1206
DpnII	GATC	5 cut(s)	155, 655, 788, 1107, 1204
Eam1104I	CTCTTC	1 cut(s)	1005
EarI	CTCTTC	1 cut(s)	1005
Ecl136II	GAGCTC	1 cut(s)	120
Eco24I	GRGCYC	1 cut(s)	122
Eco53kI	GAGCTC	1 cut(s)	120
EcoICRI	GAGCTC	1 cut(s)	120
EcoRI	GAATTC	1 cut(s)	683
EcoT22I	ATGCAT	1 cut(s)	352
EcoT38I	GRGCYC	1 cut(s)	122
FaeI	CATG	8 cut(s)	327, 656, 662, 745, 827, 956, 1244, 1498
FalI	AAGNNNNNCTT	2 cut(s)	1184, 1216
FaqI	GGGAC	2 cut(s)	514, 1220
FatI	CATG	8 cut(s)	323, 652, 658, 741, 823, 952, 1240, 1494
FauI	CCCGC	1 cut(s)	76
FauNDI	CATATG	1 cut(s)	1359
FbaI	TGATCA	1 cut(s)	655
FblI	GTMKAC	1 cut(s)	1071
Fnu4HI	GCNGC	2 cut(s)	12, 125
FokI	GGATG	1 cut(s)	648
FriOI	GRGCYC	1 cut(s)	122
Fsp4HI	GCNGC	2 cut(s)	12, 125
FspBI	CTAG	6 cut(s)	77, 180, 194, 809, 1148, 1214
GluI	GCNGC	2 cut(s)	12, 125
GsaI	CCCAGC	1 cut(s)	94
GsuI	CTGGAG	1 cut(s)	1088
Hin1II	CATG	8 cut(s)	327, 656, 662, 745, 827, 956, 1244, 1498
HindIII	AAGCTT	1 cut(s)	830
HinfI	GANTC	3 cut(s)	382, 1298, 1482
HphI	GGTGA	5 cut(s)	34, 123, 239, 346, 712
Hpy166II	GTNNAC	5 cut(s)	230, 603, 1072, 1280, 1404
Hpy188III	TCNNGA	3 cut(s)	426, 446, 1105
Hpy8I	GTNNAC	5 cut(s)	230, 603, 1072, 1280, 1404
HpyAV	CCTTC	3 cut(s)	193, 433, 1288
HpyCH4III	ACNGT	3 cut(s)	99, 852, 1464
HpyCH4V	TGCA	6 cut(s)	350, 412, 497, 823, 1357, 1363
HpyF10VI	GCNNNNNNNGC	5 cut(s)	133, 829, 943, 968, 1219
HpyF3I	CTNAG	3 cut(s)	162, 291, 1114
Hsp92II	CATG	8 cut(s)	327, 656, 662, 745, 827, 956, 1244, 1498
Ksp22I	TGATCA	1 cut(s)	655
Kzo9I	GATC	5 cut(s)	155, 655, 788, 1107, 1204
LguI	GCTCTTC	1 cut(s)	1005
LmnI	GCTCC	1 cut(s)	1032
LpnPI	CCDG	7 cut(s)	104, 210, 411, 483, 498, 777, 1118
Lsp1109I	GCAGC	1 cut(s)	111
LweI	GCATC	2 cut(s)	196, 518
MaeI	CTAG	6 cut(s)	77, 180, 194, 809, 1148, 1214
MaeIII	GTNAC	4 cut(s)	129, 398, 1309, 1435
MalI	GATC	5 cut(s)	157, 657, 790, 1109, 1206
MboI	GATC	5 cut(s)	155, 655, 788, 1107, 1204
MboII	GAAGA	8 cut(s)	37, 232, 403, 941, 1022, 1066, 1119, 1321
MflI	RGATCY	2 cut(s)	788, 1204
MhlI	GDGCHC	1 cut(s)	122
MlyI	GAGTC	1 cut(s)	391
MmeI	TCCRAC	3 cut(s)	200, 855, 1165
MnlI	CCTC	6 cut(s)	176, 828, 1038, 1078, 1125, 1398
Mph1103I	ATGCAT	1 cut(s)	352
MseI	TTAA	7 cut(s)	345, 467, 759, 837, 990, 1338, 1487
MslI	CAYNNNNRTG	1 cut(s)	657
MspCI	CTTAAG	1 cut(s)	836
MwoI	GCNNNNNNNGC	5 cut(s)	133, 829, 943, 968, 1219
NdeI	CATATG	1 cut(s)	1359
NdeII	GATC	5 cut(s)	155, 655, 788, 1107, 1204
NheI	GCTAGC	2 cut(s)	808, 1213
NlaIII	CATG	8 cut(s)	327, 656, 662, 745, 827, 956, 1244, 1498
NlaIV	GGNNCC	2 cut(s)	66, 1455
NmuCI	GTSAC	3 cut(s)	129, 398, 1435
NsiI	ATGCAT	1 cut(s)	352
NspI	RCATGY	4 cut(s)	327, 745, 827, 1244
PciI	ACATGT	3 cut(s)	323, 741, 1240
PciSI	GCTCTTC	1 cut(s)	1005
PfeI	GAWTC	2 cut(s)	1298, 1482
PkrI	GCNGC	2 cut(s)	13, 126
PleI	GAGTC	1 cut(s)	390
PpsI	GAGTC	1 cut(s)	390
PscI	ACATGT	3 cut(s)	323, 741, 1240
Psp124BI	GAGCTC	1 cut(s)	122
PspFI	CCCAGC	1 cut(s)	90
PspN4I	GGNNCC	2 cut(s)	66, 1455
PsuI	RGATCY	2 cut(s)	788, 1204
RsaI	GTAC	6 cut(s)	322, 408, 460, 491, 849, 1136
RsaNI	GTAC	6 cut(s)	321, 407, 459, 490, 848, 1135
RseI	CAYNNNNRTG	1 cut(s)	657
SacI	GAGCTC	1 cut(s)	122
SapI	GCTCTTC	1 cut(s)	1005
SaqAI	TTAA	7 cut(s)	345, 467, 759, 837, 990, 1338, 1487
SatI	GCNGC	2 cut(s)	12, 125
Sau3AI	GATC	5 cut(s)	155, 655, 788, 1107, 1204
ScaI	AGTACT	2 cut(s)	460, 491
SchI	GAGTC	1 cut(s)	391
SduI	GDGCHC	1 cut(s)	122
SfaNI	GCATC	2 cut(s)	196, 518
SmiMI	CAYNNNNRTG	1 cut(s)	657
SmlI	CTYRAG	1 cut(s)	836
SmoI	CTYRAG	1 cut(s)	836
SsiI	CCGC	2 cut(s)	69, 134
SspMI	CTAG	6 cut(s)	77, 180, 194, 809, 1148, 1214
SstI	GAGCTC	1 cut(s)	122
TaaI	ACNGT	3 cut(s)	99, 852, 1464
TaqI	TCGA	3 cut(s)	254, 642, 1130
TatI	WGTACW	4 cut(s)	406, 458, 489, 847
TfiI	GAWTC	2 cut(s)	1298, 1482
Tru1I	TTAA	7 cut(s)	345, 467, 759, 837, 990, 1338, 1487
Tru9I	TTAA	7 cut(s)	345, 467, 759, 837, 990, 1338, 1487
TscAI	CASTG	4 cut(s)	120, 621, 779, 1467
TseFI	GTSAC	3 cut(s)	129, 398, 1435
TseI	GCWGC	2 cut(s)	11, 124
Tsp45I	GTSAC	3 cut(s)	129, 398, 1435
TspDTI	ATGAA	4 cut(s)	45, 489, 941, 1013
TspRI	CASTG	4 cut(s)	120, 621, 779, 1467
Vha464I	CTTAAG	1 cut(s)	836
XapI	RAATTY	5 cut(s)	527, 609, 683, 796, 1097
XceI	RCATGY	4 cut(s)	327, 745, 827, 1244
XcmI	CCANNNNNNNNNTGG	1 cut(s)	656
XmiI	GTMKAC	1 cut(s)	1071
XspI	CTAG	6 cut(s)	77, 180, 194, 809, 1148, 1214
ZrmI	AGTACT	2 cut(s)	460, 491
Zsp2I	ATGCAT	1 cut(s)	352

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.