Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0000779

Physical Location & Seq

Genomic Coordinates Reverse (-)

61665023 .. 61668489

Gene Structure 3467 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000004718

Sequence Viewer

CDS Protein Promoter (2k)

Length: 795 bp

ATGCCATCTCCAGTGCAGCTACCATTACAGTATCCTAATAGAGACAAGATGCCTTGTGCATTGTCGTTTCTGGGTGAACTTGGAATCGGATCTTCCATAGTCATAGACCCGACTCAGTGTAGTGGAAATGGATTGTCGTTGTCGGATCGAGCATATATTAATCTTTCCACTCAATCTCTTGGTGTGGAGGATTGTTTTCGGCCCATTAGATATGAAATGGTGACAGATGCGTTAGAGGCTATTAAAACAATTGTTGCCACTGACAGTGTTATTGAGAGCTGCTTGAACATGAACTTACCCAATATAGTTGCTAGTGAAACAGTTGTGAATGGCTCTAAGTTAGAAGGATCAAATGCAAAGAATGCAGAATATGAGCGAGATGATGCACTTTTTAAGAATGATGTACTGGTTTTGAATCATTTCTATGTGTTTGTAAAAGAGTTGGAGAAAGCACCTACTATTTTGCTTCTTAGTTTGCTCAAAATTATGGCAGATATTAGAGAGCAGATTGAGCTTCTTCATGGGCAAGCGAAAAGGGCAGAGTTGTATACTGACCTTAAAGAGGTGAAAAGGAGAAAAGAGCTTCTGGTATTGATGGGGAGCAACAATGAGAGGAACAAGAAGAACAAAGGCTTTGTAGACTTGTGGATAAATTCAGAGCACCAAATATGCCCCAAAAGTAGACAGAAACTTATTCATCACATGGCCCTTATGCCTAACTATGCGCTGAAGAGTCTATTGCATCAATGGTGTGAGGAAAACAATTGCCTGGGTAAATTTGAAGTACAGAGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002237 GO:0002682 GO:0002683 GO:0003674 GO:0003824 GO:0004842 GO:0005102 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005886 GO:0006464 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009608 GO:0009609 GO:0009610 GO:0009617 GO:0009620 GO:0009877 GO:0009987 GO:0010033 GO:0010941 GO:0016020 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0032446 GO:0033612 GO:0036211 GO:0036377 GO:0042221 GO:0042742 GO:0042981 GO:0043066 GO:0043067 GO:0043069 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044403 GO:0044419 GO:0044424 GO:0044444 GO:0044464 GO:0048519 GO:0048523 GO:0048580 GO:0048583 GO:0048585 GO:0050776 GO:0050777 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051239 GO:0051704 GO:0051707 GO:0060548 GO:0061630 GO:0061659 GO:0065007 GO:0070647 GO:0070696 GO:0071704 GO:0071944 GO:0098542 GO:0140096 GO:1901564 GO:2000026 GO:2000028 GO:2000241

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Arm U-box

Protein Analysis

265

Amino Acids

29.86

Weight (kDa)

6.33

Isoelectric Point (pI)

41.56

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000779)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g29862
rosa_chinensis	RchiOBHm_Chr1g0313641 RchiOBHm_Chr4g0408161 RchiOBHm_Chr4g0408171 RchiOBHm_Chr4g0437611 RchiOBHm_Chr4g0437621 RchiOBHm_Chr4g0444671 RchiOBHm_Chr5g0045021 RchiOBHm_Chr5g0070121 RchiOBHm_Chr5g0082551 RchiOBHm_Chr6g0247501 RchiOBHm_Chr6g0271311 RchiOBHm_Chr6g0290811 RchiOBHm_Chr6g0310571
rosa_laevigata	RLG00000004718 RLG00000008552 RLG00000015595
rosa_multiflora	Rmu_co8342433.1_g000001 Rmu_sc0000147.1_g000080 Rmu_sc0000391.1_g000018 Rmu_sc0000753.1_g000021 Rmu_sc0000870.1_g000071 Rmu_sc0000870.1_g000072 Rmu_sc0001648.1_g000026 Rmu_sc0001648.1_g000043 Rmu_sc0001972.1_g000009 Rmu_sc0002109.1_g000009 Rmu_sc0003340.1_g000008 Rmu_sc0003340.1_g000009 Rmu_sc0004874.1_g000014 Rmu_sc0005823.1_g000009 Rmu_sc0005941.1_g000006 Rmu_sc0009850.1_g000015 Rmu_sc0015511.1_g000012
rosa_roxburghii	Rroxscaffold_1G00034320 Rroxscaffold_1G00036130 Rroxscaffold_1G00043440 Rroxscaffold_1G00043450 Rroxscaffold_1G00050660 Rroxscaffold_1G00050670 Rroxscaffold_1G00066940 Rroxscaffold_2G00094100 Rroxscaffold_2G00120240 Rroxscaffold_4G00287900 Rroxscaffold_4G00287910 Rroxscaffold_4G00290700 Rroxscaffold_4G00290710 Rroxscaffold_4G00298640 Rroxscaffold_4G00308540 Rroxscaffold_5G00369420 Rroxscaffold_7G00217900
rosa_rugosa	Rorug06G0077100
rosa_samantha	Rh1AG005600 Rh1AG005700 Rh1BG433000 Rh1DG003900 Rh2CG286600 Rh3AG243900 Rh3BG368800 Rh5AG301800 Rh5BG309500 Rh5CG501500 Rh5CG501600 Rh5DG320200 Rh6AG179500 Rh6CG338800 Rh6CG405000 Rh6DG092100 Rh7AG294100 Rh7CG239600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	3 cut(s)	548, 639, 682
AclWI	GGATC	3 cut(s)	97, 153, 355
AcsI	RAATTY	2 cut(s)	652, 776
AcuI	CTGAAG	1 cut(s)	749
AfaI	GTAC	2 cut(s)	405, 786
AfiI	CCNNNNNNNGG	1 cut(s)	562
AgsI	TTSAA	3 cut(s)	286, 415, 782
AjnI	CCWGG	1 cut(s)	768
AluBI	AGCT	4 cut(s)	19, 279, 514, 583
AluI	AGCT	4 cut(s)	19, 279, 514, 583
Alw21I	GWGCWC	1 cut(s)	663
Alw26I	GTCTC	1 cut(s)	36
AlwI	GGATC	3 cut(s)	97, 153, 355
AoxI	GGCC	2 cut(s)	200, 705
ApeKI	GCWGC	2 cut(s)	16, 279
ApoI	RAATTY	2 cut(s)	652, 776
AseI	ATTAAT	1 cut(s)	159
Asp700I	GAANNNNTTC	1 cut(s)	419
AspLEI	GCGC	1 cut(s)	727
AspS9I	GGNCC	2 cut(s)	201, 706
AsuHPI	GGTGA	3 cut(s)	86, 232, 577
Bbv12I	GWGCWC	1 cut(s)	663
BbvI	GCAGC	2 cut(s)	28, 266
BccI	CCATC	2 cut(s)	13, 589
BciT130I	CCWGG	1 cut(s)	770
BciVI	GTATCC	1 cut(s)	42
BcoDI	GTCTC	1 cut(s)	36
BfaI	CTAG	1 cut(s)	312
BfuI	GTATCC	1 cut(s)	42
BisI	GCNGC	2 cut(s)	17, 280
BlsI	GCNGC	2 cut(s)	18, 281
Bme1390I	CCNGG	1 cut(s)	770
BmgT120I	GGNCC	2 cut(s)	201, 706
BmrFI	CCNGG	1 cut(s)	770
BmsI	GCATC	4 cut(s)	39, 217, 373, 751
BsaJI	CCNNGG	1 cut(s)	769
Bsc4I	CCNNNNNNNGG	1 cut(s)	562
Bse1I	ACTGG	2 cut(s)	11, 411
BseBI	CCWGG	1 cut(s)	770
BseDI	CCNNGG	1 cut(s)	769
BseLI	CCNNNNNNNGG	1 cut(s)	562
BseMII	CTCAG	1 cut(s)	128
BseNI	ACTGG	2 cut(s)	11, 411
BseXI	GCAGC	2 cut(s)	28, 266
BsgI	GTGCAG	1 cut(s)	35
BshFI	GGCC	2 cut(s)	202, 707
BsiHKAI	GWGCWC	1 cut(s)	663
BslI	CCNNNNNNNGG	1 cut(s)	562
BsmAI	GTCTC	1 cut(s)	36
BsmI	GAATGC	1 cut(s)	367
BsnI	GGCC	2 cut(s)	202, 707
Bsp1286I	GDGCHC	1 cut(s)	663
Bsp143I	GATC	3 cut(s)	89, 145, 347
BspANI	GGCC	2 cut(s)	202, 707
BspCNI	CTCAG	1 cut(s)	127
BspPI	GGATC	3 cut(s)	97, 153, 355
BsrI	ACTGG	2 cut(s)	11, 411
BssECI	CCNNGG	1 cut(s)	769
BssMI	GATC	3 cut(s)	89, 145, 347
BssNAI	GTATAC	1 cut(s)	549
Bst1107I	GTATAC	1 cut(s)	549
Bst2UI	CCWGG	1 cut(s)	770
Bst4CI	ACNGT	3 cut(s)	30, 266, 322
Bst6I	CTCTTC	1 cut(s)	725
BstAPI	GCANNNNNTGC	1 cut(s)	362
BstC8I	GCNNGC	1 cut(s)	528
BstDEI	CTNAG	3 cut(s)	114, 336, 470
BstENI	CCTNNNNNAGG	1 cut(s)	560
BstHHI	GCGC	1 cut(s)	727
BstKTI	GATC	3 cut(s)	92, 148, 350
BstMAI	GTCTC	1 cut(s)	36
BstMBI	GATC	3 cut(s)	89, 145, 347
BstMWI	GCNNNNNNNGC	4 cut(s)	236, 362, 511, 536
BstNI	CCWGG	1 cut(s)	770
BstSCI	CCNGG	1 cut(s)	768
BstV1I	GCAGC	2 cut(s)	28, 266
BstX2I	RGATCY	1 cut(s)	89
BstYI	RGATCY	1 cut(s)	89
BstZ17I	GTATAC	1 cut(s)	549
BsuI	GTATCC	1 cut(s)	42
BsuRI	GGCC	2 cut(s)	202, 707
BtsIMutI	CAGTG	4 cut(s)	18, 122, 258, 271
Cac8I	GCNNGC	1 cut(s)	528
CfoI	GCGC	1 cut(s)	727
Cfr13I	GGNCC	2 cut(s)	201, 706
Csp6I	GTAC	2 cut(s)	404, 785
CviAII	CATG	3 cut(s)	289, 521, 703
CviJI	RGCY	9 cut(s)	19, 202, 239, 279, 333, 514, 583, 633, 707
CviKI_1	RGCY	9 cut(s)	19, 202, 239, 279, 333, 514, 583, 633, 707
CviQI	GTAC	2 cut(s)	404, 785
DdeI	CTNAG	3 cut(s)	114, 336, 470
DpnI	GATC	3 cut(s)	91, 147, 349
DpnII	GATC	3 cut(s)	89, 145, 347
Eam1104I	CTCTTC	1 cut(s)	725
EarI	CTCTTC	1 cut(s)	725
Eco57I	CTGAAG	1 cut(s)	749
EcoNI	CCTNNNNNAGG	1 cut(s)	560
EcoRII	CCWGG	1 cut(s)	768
FaeI	CATG	3 cut(s)	292, 524, 706
FatI	CATG	3 cut(s)	288, 520, 702
FblI	GTMKAC	3 cut(s)	548, 639, 682
Fnu4HI	GCNGC	2 cut(s)	17, 280
Fsp4HI	GCNGC	2 cut(s)	17, 280
FspBI	CTAG	1 cut(s)	312
GlaI	GCGC	1 cut(s)	726
GluI	GCNGC	2 cut(s)	17, 280
HaeIII	GGCC	2 cut(s)	202, 707
HhaI	GCGC	1 cut(s)	727
Hin1II	CATG	3 cut(s)	292, 524, 706
Hin6I	GCGC	1 cut(s)	725
HinP1I	GCGC	1 cut(s)	725
HinfI	GANTC	4 cut(s)	84, 112, 415, 733
HphI	GGTGA	3 cut(s)	86, 232, 577
Hpy166II	GTNNAC	4 cut(s)	77, 549, 640, 683
Hpy188I	TCNGA	3 cut(s)	89, 145, 658
Hpy8I	GTNNAC	4 cut(s)	77, 549, 640, 683
HpyAV	CCTTC	1 cut(s)	338
HpyCH4III	ACNGT	3 cut(s)	30, 266, 322
HpyCH4V	TGCA	6 cut(s)	16, 59, 356, 365, 386, 742
HpyF10VI	GCNNNNNNNGC	4 cut(s)	236, 362, 511, 536
HpyF3I	CTNAG	3 cut(s)	114, 336, 470
Hsp92II	CATG	3 cut(s)	292, 524, 706
HspAI	GCGC	1 cut(s)	725
Kzo9I	GATC	3 cut(s)	89, 145, 347
LmnI	GCTCC	1 cut(s)	600
LpnPI	CCDG	6 cut(s)	24, 56, 392, 572, 755, 782
Lsp1109I	GCAGC	2 cut(s)	28, 266
LweI	GCATC	4 cut(s)	39, 217, 373, 751
MaeI	CTAG	1 cut(s)	312
MaeIII	GTNAC	1 cut(s)	220
MalI	GATC	3 cut(s)	91, 147, 349
MboI	GATC	3 cut(s)	89, 145, 347
MboII	GAAGA	4 cut(s)	84, 509, 634, 742
MfeI	CAATTG	2 cut(s)	249, 763
MflI	RGATCY	1 cut(s)	89
MhlI	GDGCHC	1 cut(s)	663
MluCI	AATT	5 cut(s)	249, 483, 652, 763, 776
MlyI	GAGTC	2 cut(s)	106, 742
MmeI	TCCRAC	2 cut(s)	123, 423
MnlI	CCTC	5 cut(s)	181, 229, 556, 606, 748
MroXI	GAANNNNTTC	1 cut(s)	419
MseI	TTAA	4 cut(s)	159, 243, 393, 558
MslI	CAYNNNNRTG	1 cut(s)	423
MspR9I	CCNGG	1 cut(s)	770
MunI	CAATTG	2 cut(s)	249, 763
Mva1269I	GAATGC	1 cut(s)	367
MvaI	CCWGG	1 cut(s)	770
MwoI	GCNNNNNNNGC	4 cut(s)	236, 362, 511, 536
NdeII	GATC	3 cut(s)	89, 145, 347
NlaIII	CATG	3 cut(s)	292, 524, 706
NmuCI	GTSAC	1 cut(s)	220
PctI	GAATGC	1 cut(s)	367
PdmI	GAANNNNTTC	1 cut(s)	419
PfeI	GAWTC	2 cut(s)	84, 415
PkrI	GCNGC	2 cut(s)	18, 281
PleI	GAGTC	2 cut(s)	106, 741
PpsI	GAGTC	2 cut(s)	106, 741
PshBI	ATTAAT	1 cut(s)	159
Psp6I	CCWGG	1 cut(s)	768
PspGI	CCWGG	1 cut(s)	768
PspPI	GGNCC	2 cut(s)	201, 706
PsuI	RGATCY	1 cut(s)	89
RsaI	GTAC	2 cut(s)	405, 786
RsaNI	GTAC	2 cut(s)	404, 785
RseI	CAYNNNNRTG	1 cut(s)	423
SaqAI	TTAA	4 cut(s)	159, 243, 393, 558
SatI	GCNGC	2 cut(s)	17, 280
Sau3AI	GATC	3 cut(s)	89, 145, 347
Sau96I	GGNCC	2 cut(s)	201, 706
SchI	GAGTC	2 cut(s)	106, 742
ScrFI	CCNGG	1 cut(s)	770
SduI	GDGCHC	1 cut(s)	663
SetI	ASST	7 cut(s)	21, 281, 457, 516, 558, 567, 585
SfaNI	GCATC	4 cut(s)	39, 217, 373, 751
SmiMI	CAYNNNNRTG	1 cut(s)	423
Sse9I	AATT	5 cut(s)	249, 483, 652, 763, 776
SspMI	CTAG	1 cut(s)	312
StyD4I	CCNGG	1 cut(s)	768
TaaI	ACNGT	3 cut(s)	30, 266, 322
TaqI	TCGA	1 cut(s)	148
TasI	AATT	5 cut(s)	249, 483, 652, 763, 776
TatI	WGTACW	2 cut(s)	403, 784
TfiI	GAWTC	2 cut(s)	84, 415
Tru1I	TTAA	4 cut(s)	159, 243, 393, 558
Tru9I	TTAA	4 cut(s)	159, 243, 393, 558
TscAI	CASTG	4 cut(s)	18, 122, 265, 271
TseFI	GTSAC	1 cut(s)	220
TseI	GCWGC	2 cut(s)	16, 279
Tsp45I	GTSAC	1 cut(s)	220
TspDTI	ATGAA	4 cut(s)	228, 305, 509, 686
TspRI	CASTG	4 cut(s)	18, 122, 265, 271
VspI	ATTAAT	1 cut(s)	159
XagI	CCTNNNNNAGG	1 cut(s)	560
XapI	RAATTY	2 cut(s)	652, 776
XmiI	GTMKAC	3 cut(s)	548, 639, 682
XmnI	GAANNNNTTC	1 cut(s)	419
XspI	CTAG	1 cut(s)	312

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.