Cytochrome p450
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| p450 | PF00067 | 36 - 506 | 5.6e-98 | Cytochrome P450 |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 388 |
| AatII | GACGTC | 2 cut(s) | 567, 968 |
| Acc36I | ACCTGC | 1 cut(s) | 388 |
| AccB1I | GGYRCC | 2 cut(s) | 373, 1005 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 683 |
| AccI | GTMKAC | 1 cut(s) | 968 |
| AccII | CGCG | 2 cut(s) | 183, 371 |
| AclWI | GGATC | 2 cut(s) | 474, 1168 |
| AcoI | YGGCCR | 1 cut(s) | 366 |
| AcsI | RAATTY | 4 cut(s) | 611, 632, 1374, 1426 |
| AcvI | CACGTG | 1 cut(s) | 278 |
| AcyI | GRCGYC | 3 cut(s) | 374, 564, 965 |
| AfaI | GTAC | 3 cut(s) | 39, 596, 765 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 134, 513, 683 |
| AflIII | ACRYGT | 1 cut(s) | 939 |
| AgsI | TTSAA | 3 cut(s) | 191, 1108, 1289 |
| AjiI | CACGTC | 2 cut(s) | 364, 940 |
| AjnI | CCWGG | 3 cut(s) | 933, 1381, 1456 |
| AluBI | AGCT | 8 cut(s) | 10, 240, 343, 622, 721, 926, 1364, 1559 |
| AluI | AGCT | 8 cut(s) | 10, 240, 343, 622, 721, 926, 1364, 1559 |
| Alw21I | GWGCWC | 2 cut(s) | 12, 624 |
| Alw26I | GTCTC | 6 cut(s) | 262, 467, 574, 660, 788, 1245 |
| AlwI | GGATC | 2 cut(s) | 474, 1168 |
| Ama87I | CYCGRG | 1 cut(s) | 571 |
| AoxI | GGCC | 3 cut(s) | 211, 366, 1209 |
| ApeKI | GCWGC | 2 cut(s) | 272, 1432 |
| ApoI | RAATTY | 4 cut(s) | 611, 632, 1374, 1426 |
| ArsI | GACNNNNNNTTYG | 4 cut(s) | 290, 322, 915, 947 |
| AspA2I | CCTAGG | 1 cut(s) | 320 |
| AspLEI | GCGC | 3 cut(s) | 185, 376, 434 |
| AspS9I | GGNCC | 4 cut(s) | 75, 212, 324, 447 |
| AsuC2I | CCSGG | 2 cut(s) | 165, 1256 |
| AsuHPI | GGTGA | 4 cut(s) | 96, 395, 412, 619 |
| AsuII | TTCGAA | 1 cut(s) | 454 |
| AvaI | CYCGRG | 1 cut(s) | 571 |
| AvaII | GGWCC | 3 cut(s) | 75, 324, 447 |
| AvrII | CCTAGG | 1 cut(s) | 320 |
| BanI | GGYRCC | 2 cut(s) | 373, 1005 |
| BanII | GRGCYC | 2 cut(s) | 12, 624 |
| BarI | GAAGNNNNNNTAC | 4 cut(s) | 332, 364, 581, 613 |
| BbrPI | CACGTG | 1 cut(s) | 278 |
| Bbv12I | GWGCWC | 2 cut(s) | 12, 624 |
| BbvI | GCAGC | 2 cut(s) | 284, 1419 |
| BccI | CCATC | 3 cut(s) | 535, 599, 685 |
| BceAI | ACGGC | 4 cut(s) | 32, 226, 681, 1520 |
| BciT130I | CCWGG | 3 cut(s) | 935, 1383, 1458 |
| BciVI | GTATCC | 1 cut(s) | 952 |
| BclI | TGATCA | 2 cut(s) | 486, 829 |
| BcnI | CCSGG | 2 cut(s) | 165, 1256 |
| BcoDI | GTCTC | 6 cut(s) | 262, 467, 574, 660, 788, 1245 |
| BfaI | CTAG | 8 cut(s) | 155, 321, 584, 722, 801, 977, 1226, 1421 |
| BfoI | RGCGCY | 2 cut(s) | 377, 435 |
| BfuAI | ACCTGC | 1 cut(s) | 388 |
| BfuI | GTATCC | 1 cut(s) | 952 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 702 |
| BisI | GCNGC | 6 cut(s) | 273, 369, 372, 395, 579, 1433 |
| BlnI | CCTAGG | 1 cut(s) | 320 |
| BlpI | GCTNAGC | 1 cut(s) | 717 |
| BlsI | GCNGC | 6 cut(s) | 274, 370, 373, 396, 580, 1434 |
| BmcAI | AGTACT | 2 cut(s) | 596, 765 |
| Bme1390I | CCNGG | 5 cut(s) | 165, 935, 1256, 1383, 1458 |
| Bme18I | GGWCC | 3 cut(s) | 75, 324, 447 |
| BmeT110I | CYCGRG | 1 cut(s) | 571 |
| BmgBI | CACGTC | 2 cut(s) | 364, 940 |
| BmgT120I | GGNCC | 4 cut(s) | 75, 212, 324, 447 |
| BmiI | GGNNCC | 2 cut(s) | 375, 1007 |
| BmrFI | CCNGG | 5 cut(s) | 165, 935, 1256, 1383, 1458 |
| BmsI | GCATC | 3 cut(s) | 417, 736, 927 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 565, 597 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 717 |
| Bpu14I | TTCGAA | 1 cut(s) | 454 |
| BpuEI | CTTGAG | 1 cut(s) | 448 |
| BpuMI | CCSGG | 2 cut(s) | 165, 1256 |
| BsaAI | YACGTR | 1 cut(s) | 278 |
| BsaBI | GATNNNNATC | 1 cut(s) | 1172 |
| BsaHI | GRCGYC | 3 cut(s) | 374, 564, 965 |
| BsaI | GGTCTC | 1 cut(s) | 1245 |
| BsaJI | CCNNGG | 7 cut(s) | 208, 267, 320, 369, 1010, 1382, 1536 |
| BsaWI | WCCGGW | 2 cut(s) | 1276, 1291 |
| BsaXI | ACNNNNNCTCC | 8 cut(s) | 24, 54, 108, 138, 510, 540, 1363, 1393 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 134, 513, 683 |
| Bse1I | ACTGG | 1 cut(s) | 395 |
| Bse3DI | GCAATG | 1 cut(s) | 993 |
| Bse8I | GATNNNNATC | 1 cut(s) | 1172 |
| BseBI | CCWGG | 3 cut(s) | 935, 1383, 1458 |
| BseDI | CCNNGG | 7 cut(s) | 208, 267, 320, 369, 1010, 1382, 1536 |
| BseGI | GGATG | 4 cut(s) | 57, 80, 535, 1138 |
| BseJI | GATNNNNATC | 1 cut(s) | 1172 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 134, 513, 683 |
| BseMI | GCAATG | 1 cut(s) | 993 |
| BseMII | CTCAG | 1 cut(s) | 992 |
| BseNI | ACTGG | 1 cut(s) | 395 |
| BseRI | GAGGAG | 5 cut(s) | 32, 215, 250, 485, 1057 |
| BseXI | GCAGC | 2 cut(s) | 284, 1419 |
| BseYI | CCCAGC | 1 cut(s) | 950 |
| BsgI | GTGCAG | 1 cut(s) | 1418 |
| Bsh1236I | CGCG | 2 cut(s) | 183, 371 |
| BshFI | GGCC | 3 cut(s) | 213, 368, 1211 |
| BshNI | GGYRCC | 2 cut(s) | 373, 1005 |
| BsiHKAI | GWGCWC | 2 cut(s) | 12, 624 |
| BsiHKCI | CYCGRG | 1 cut(s) | 571 |
| BsiSI | CCGG | 4 cut(s) | 165, 1256, 1277, 1292 |
| BslFI | GGGAC | 1 cut(s) | 967 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 134, 513, 683 |
| BsmAI | GTCTC | 6 cut(s) | 262, 467, 574, 660, 788, 1245 |
| BsmBI | CGTCTC | 3 cut(s) | 262, 574, 788 |
| BsmFI | GGGAC | 1 cut(s) | 967 |
| BsmI | GAATGC | 1 cut(s) | 1237 |
| BsnI | GGCC | 3 cut(s) | 213, 368, 1211 |
| Bso31I | GGTCTC | 1 cut(s) | 1245 |
| BsoBI | CYCGRG | 1 cut(s) | 571 |
| Bsp119I | TTCGAA | 1 cut(s) | 454 |
| Bsp1286I | GDGCHC | 2 cut(s) | 12, 624 |
| Bsp143I | GATC | 6 cut(s) | 282, 479, 486, 829, 1173, 1242 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 717 |
| BspANI | GGCC | 3 cut(s) | 213, 368, 1211 |
| BspCNI | CTCAG | 1 cut(s) | 993 |
| BspFNI | CGCG | 2 cut(s) | 183, 371 |
| BspHI | TCATGA | 2 cut(s) | 285, 1017 |
| BspLI | GGNNCC | 2 cut(s) | 375, 1007 |
| BspMI | ACCTGC | 1 cut(s) | 388 |
| BspPI | GGATC | 2 cut(s) | 474, 1168 |
| BspQI | GCTCTTC | 2 cut(s) | 398, 1134 |
| BspT104I | TTCGAA | 1 cut(s) | 454 |
| BspT107I | GGYRCC | 2 cut(s) | 373, 1005 |
| BspTNI | GGTCTC | 1 cut(s) | 1245 |
| BsrDI | GCAATG | 1 cut(s) | 993 |
| BsrI | ACTGG | 1 cut(s) | 395 |
| BssECI | CCNNGG | 7 cut(s) | 208, 267, 320, 369, 1010, 1382, 1536 |
| BssMI | GATC | 6 cut(s) | 282, 479, 486, 829, 1173, 1242 |
| BssNI | GRCGYC | 3 cut(s) | 374, 564, 965 |
| BssT1I | CCWWGG | 2 cut(s) | 320, 1010 |
| Bst2UI | CCWGG | 3 cut(s) | 935, 1383, 1458 |
| Bst4CI | ACNGT | 4 cut(s) | 383, 763, 1316, 1405 |
| Bst6I | CTCTTC | 6 cut(s) | 68, 398, 462, 1134, 1243, 1275 |
| BstACI | GRCGYC | 3 cut(s) | 374, 564, 965 |
| BstBAI | YACGTR | 1 cut(s) | 278 |
| BstBI | TTCGAA | 1 cut(s) | 454 |
| BstC8I | GCNNGC | 2 cut(s) | 313, 416 |
| BstDEI | CTNAG | 5 cut(s) | 461, 717, 1001, 1164, 1560 |
| BstDSI | CCRYGG | 3 cut(s) | 208, 369, 1536 |
| BstF5I | GGATG | 4 cut(s) | 57, 80, 535, 1138 |
| BstFNI | CGCG | 2 cut(s) | 183, 371 |
| BstH2I | RGCGCY | 2 cut(s) | 377, 435 |
| BstHHI | GCGC | 3 cut(s) | 185, 376, 434 |
| BstKTI | GATC | 6 cut(s) | 285, 482, 489, 832, 1176, 1245 |
| BstMAI | GTCTC | 6 cut(s) | 262, 467, 574, 660, 788, 1245 |
| BstMBI | GATC | 6 cut(s) | 282, 479, 486, 829, 1173, 1242 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 191, 272, 702 |
| BstNI | CCWGG | 3 cut(s) | 935, 1383, 1458 |
| BstSCI | CCNGG | 5 cut(s) | 163, 933, 1254, 1381, 1456 |
| BstUI | CGCG | 2 cut(s) | 183, 371 |
| BstV1I | GCAGC | 2 cut(s) | 284, 1419 |
| BstX2I | RGATCY | 1 cut(s) | 479 |
| BstYI | RGATCY | 1 cut(s) | 479 |
| BsuI | GTATCC | 1 cut(s) | 952 |
| BsuRI | GGCC | 3 cut(s) | 213, 368, 1211 |
| BtgI | CCRYGG | 3 cut(s) | 208, 369, 1536 |
| BtgZI | GCGATG | 2 cut(s) | 164, 663 |
| BtrI | CACGTC | 2 cut(s) | 364, 940 |
| BtsCI | GGATG | 4 cut(s) | 57, 80, 535, 1138 |
| BtsI | GCAGTG | 1 cut(s) | 1119 |
| BtsIMutI | CAGTG | 2 cut(s) | 1119, 1321 |
| BveI | ACCTGC | 1 cut(s) | 388 |
| Cac8I | GCNNGC | 2 cut(s) | 313, 416 |
| CciI | TCATGA | 2 cut(s) | 285, 1017 |
| CfoI | GCGC | 3 cut(s) | 185, 376, 434 |
| Cfr13I | GGNCC | 4 cut(s) | 75, 212, 324, 447 |
| Cfr42I | CCGCGG | 1 cut(s) | 372 |
| CseI | GACGC | 1 cut(s) | 722 |
| Csp6I | GTAC | 3 cut(s) | 38, 595, 764 |
| CviAII | CATG | 6 cut(s) | 220, 286, 484, 1018, 1087, 1486 |
| CviQI | GTAC | 3 cut(s) | 38, 595, 764 |
| DdeI | CTNAG | 5 cut(s) | 461, 717, 1001, 1164, 1560 |
| DinI | GGCGCC | 1 cut(s) | 375 |
| DpnI | GATC | 6 cut(s) | 284, 481, 488, 831, 1175, 1244 |
| DpnII | GATC | 6 cut(s) | 282, 479, 486, 829, 1173, 1242 |
| EaeI | YGGCCR | 1 cut(s) | 366 |
| Eam1104I | CTCTTC | 6 cut(s) | 68, 398, 462, 1134, 1243, 1275 |
| EarI | CTCTTC | 6 cut(s) | 68, 398, 462, 1134, 1243, 1275 |
| EciI | GGCGGA | 2 cut(s) | 20, 253 |
| Ecl136II | GAGCTC | 2 cut(s) | 10, 622 |
| Eco130I | CCWWGG | 2 cut(s) | 320, 1010 |
| Eco24I | GRGCYC | 2 cut(s) | 12, 624 |
| Eco31I | GGTCTC | 1 cut(s) | 1245 |
| Eco47I | GGWCC | 3 cut(s) | 75, 324, 447 |
| Eco53kI | GAGCTC | 2 cut(s) | 10, 622 |
| Eco72I | CACGTG | 1 cut(s) | 278 |
| Eco88I | CYCGRG | 1 cut(s) | 571 |
| EcoICRI | GAGCTC | 2 cut(s) | 10, 622 |
| EcoRII | CCWGG | 3 cut(s) | 933, 1381, 1456 |
| EcoT14I | CCWWGG | 2 cut(s) | 320, 1010 |
| EcoT22I | ATGCAT | 1 cut(s) | 751 |
| EcoT38I | GRGCYC | 2 cut(s) | 12, 624 |
| EgeI | GGCGCC | 1 cut(s) | 375 |
| EheI | GGCGCC | 1 cut(s) | 375 |
| ErhI | CCWWGG | 2 cut(s) | 320, 1010 |
| Esp3I | CGTCTC | 3 cut(s) | 262, 574, 788 |
| FaeI | CATG | 6 cut(s) | 223, 289, 487, 1021, 1090, 1489 |
| FaqI | GGGAC | 1 cut(s) | 967 |
| FatI | CATG | 6 cut(s) | 219, 285, 483, 1017, 1086, 1485 |
| FauI | CCCGC | 2 cut(s) | 640, 873 |
| FbaI | TGATCA | 2 cut(s) | 486, 829 |
| FblI | GTMKAC | 1 cut(s) | 968 |
| Fnu4HI | GCNGC | 6 cut(s) | 273, 369, 372, 395, 579, 1433 |
| FokI | GGATG | 4 cut(s) | 44, 67, 542, 1125 |
| FriOI | GRGCYC | 2 cut(s) | 12, 624 |
| Fsp4HI | GCNGC | 6 cut(s) | 273, 369, 372, 395, 579, 1433 |
| FspBI | CTAG | 8 cut(s) | 155, 321, 584, 722, 801, 977, 1226, 1421 |
| GlaI | GCGC | 3 cut(s) | 184, 375, 433 |
| GluI | GCNGC | 6 cut(s) | 273, 369, 372, 395, 579, 1433 |
| GsaI | CCCAGC | 1 cut(s) | 954 |
| HaeII | RGCGCY | 2 cut(s) | 377, 435 |
| HaeIII | GGCC | 3 cut(s) | 213, 368, 1211 |
| HapII | CCGG | 4 cut(s) | 165, 1256, 1277, 1292 |
| HgaI | GACGC | 1 cut(s) | 722 |
| HhaI | GCGC | 3 cut(s) | 185, 376, 434 |
| Hin1I | GRCGYC | 3 cut(s) | 374, 564, 965 |
| Hin1II | CATG | 6 cut(s) | 223, 289, 487, 1021, 1090, 1489 |
| Hin6I | GCGC | 3 cut(s) | 183, 374, 432 |
| HinP1I | GCGC | 3 cut(s) | 183, 374, 432 |
| HincII | GTYRAC | 1 cut(s) | 1312 |
| HindII | GTYRAC | 1 cut(s) | 1312 |
| HindIII | AAGCTT | 2 cut(s) | 238, 341 |
| HinfI | GANTC | 5 cut(s) | 421, 997, 1259, 1387, 1493 |
| HpaI | GTTAAC | 1 cut(s) | 1312 |
| HpaII | CCGG | 4 cut(s) | 165, 1256, 1277, 1292 |
| HphI | GGTGA | 4 cut(s) | 96, 395, 412, 619 |
| Hpy166II | GTNNAC | 4 cut(s) | 859, 969, 1136, 1312 |
| Hpy188I | TCNGA | 6 cut(s) | 137, 793, 834, 1002, 1247, 1361 |
| Hpy188III | TCNNGA | 8 cut(s) | 286, 337, 427, 510, 571, 905, 977, 1018 |
| Hpy8I | GTNNAC | 4 cut(s) | 859, 969, 1136, 1312 |
| Hpy99I | CGWCG | 5 cut(s) | 257, 516, 566, 569, 967 |
| HpyAV | CCTTC | 5 cut(s) | 120, 343, 433, 1102, 1362 |
| HpyCH4III | ACNGT | 4 cut(s) | 383, 763, 1316, 1405 |
| HpyCH4IV | ACGT | 6 cut(s) | 277, 363, 564, 861, 939, 965 |
| HpyCH4V | TGCA | 5 cut(s) | 749, 769, 1030, 1099, 1435 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 191, 272, 702 |
| HpyF3I | CTNAG | 5 cut(s) | 461, 717, 1001, 1164, 1560 |
| HpySE526I | ACGT | 6 cut(s) | 277, 363, 564, 861, 939, 965 |
| Hsp92I | GRCGYC | 3 cut(s) | 374, 564, 965 |
| Hsp92II | CATG | 6 cut(s) | 223, 289, 487, 1021, 1090, 1489 |
| HspAI | GCGC | 3 cut(s) | 183, 374, 432 |
| KasI | GGCGCC | 1 cut(s) | 373 |
| Ksp22I | TGATCA | 2 cut(s) | 486, 829 |
| KspAI | GTTAAC | 1 cut(s) | 1312 |
| KspI | CCGCGG | 1 cut(s) | 372 |
| Kzo9I | GATC | 6 cut(s) | 282, 479, 486, 829, 1173, 1242 |
| LguI | GCTCTTC | 2 cut(s) | 398, 1134 |
| LmnI | GCTCC | 5 cut(s) | 7, 228, 619, 897, 1361 |
| Lsp1109I | GCAGC | 2 cut(s) | 284, 1419 |
| LweI | GCATC | 3 cut(s) | 417, 736, 927 |
| MaeI | CTAG | 8 cut(s) | 155, 321, 584, 722, 801, 977, 1226, 1421 |
| MaeII | ACGT | 6 cut(s) | 277, 363, 564, 861, 939, 965 |
| MaeIII | GTNAC | 4 cut(s) | 383, 1196, 1268, 1325 |
| MalI | GATC | 6 cut(s) | 284, 481, 488, 831, 1175, 1244 |
| MboI | GATC | 6 cut(s) | 282, 479, 486, 829, 1173, 1242 |
| MflI | RGATCY | 1 cut(s) | 479 |
| MhlI | GDGCHC | 2 cut(s) | 12, 624 |
| MluCI | AATT | 7 cut(s) | 611, 632, 912, 1025, 1374, 1426, 1451 |
| Mly113I | GGCGCC | 1 cut(s) | 374 |
| Mph1103I | ATGCAT | 1 cut(s) | 751 |
| MseI | TTAA | 6 cut(s) | 615, 1073, 1119, 1311, 1322, 1505 |
| MslI | CAYNNNNRTG | 1 cut(s) | 413 |
| MspA1I | CMGCKG | 2 cut(s) | 371, 880 |
| MspI | CCGG | 4 cut(s) | 165, 1256, 1277, 1292 |
| MspR9I | CCNGG | 5 cut(s) | 165, 935, 1256, 1383, 1458 |
| Mva1269I | GAATGC | 1 cut(s) | 1237 |
| MvaI | CCWGG | 3 cut(s) | 935, 1383, 1458 |
| MvnI | CGCG | 2 cut(s) | 183, 371 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 191, 272, 702 |
| NarI | GGCGCC | 1 cut(s) | 374 |
| NciI | CCSGG | 2 cut(s) | 165, 1256 |
| NdeII | GATC | 6 cut(s) | 282, 479, 486, 829, 1173, 1242 |
| NlaIII | CATG | 6 cut(s) | 223, 289, 487, 1021, 1090, 1489 |
| NlaIV | GGNNCC | 2 cut(s) | 375, 1007 |
| NmeAIII | GCCGAG | 1 cut(s) | 292 |
| NmuCI | GTSAC | 1 cut(s) | 383 |
| NsiI | ATGCAT | 1 cut(s) | 751 |
| NspV | TTCGAA | 1 cut(s) | 454 |
| PaeR7I | CTCGAG | 1 cut(s) | 571 |
| PagI | TCATGA | 2 cut(s) | 285, 1017 |
| PaqCI | CACCTGC | 1 cut(s) | 388 |
| PciSI | GCTCTTC | 2 cut(s) | 398, 1134 |
| PcsI | WCGNNNNNNNCGW | 3 cut(s) | 451, 936, 962 |
| PctI | GAATGC | 1 cut(s) | 1237 |
| PfeI | GAWTC | 5 cut(s) | 421, 997, 1259, 1387, 1493 |
| PflFI | GACNNNGTC | 1 cut(s) | 566 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 683 |
| PfoI | TCCNGGA | 2 cut(s) | 163, 933 |
| PkrI | GCNGC | 6 cut(s) | 274, 370, 373, 396, 580, 1434 |
| PluTI | GGCGCC | 1 cut(s) | 377 |
| PmaCI | CACGTG | 1 cut(s) | 278 |
| PmlI | CACGTG | 1 cut(s) | 278 |
| Ppu21I | YACGTR | 1 cut(s) | 278 |
| Psp124BI | GAGCTC | 2 cut(s) | 12, 624 |
| Psp6I | CCWGG | 3 cut(s) | 933, 1381, 1456 |
| PspCI | CACGTG | 1 cut(s) | 278 |
| PspFI | CCCAGC | 1 cut(s) | 950 |
| PspGI | CCWGG | 3 cut(s) | 933, 1381, 1456 |
| PspN4I | GGNNCC | 2 cut(s) | 375, 1007 |
| PspPI | GGNCC | 4 cut(s) | 75, 212, 324, 447 |
| PsuI | RGATCY | 1 cut(s) | 479 |
| PsyI | GACNNNGTC | 1 cut(s) | 566 |
| RsaI | GTAC | 3 cut(s) | 39, 596, 765 |
| RsaNI | GTAC | 3 cut(s) | 38, 595, 764 |
| RseI | CAYNNNNRTG | 1 cut(s) | 413 |
| SacI | GAGCTC | 2 cut(s) | 12, 624 |
| SacII | CCGCGG | 1 cut(s) | 372 |
| SapI | GCTCTTC | 2 cut(s) | 398, 1134 |
| SaqAI | TTAA | 6 cut(s) | 615, 1073, 1119, 1311, 1322, 1505 |
| SatI | GCNGC | 6 cut(s) | 273, 369, 372, 395, 579, 1433 |
| Sau3AI | GATC | 6 cut(s) | 282, 479, 486, 829, 1173, 1242 |
| Sau96I | GGNCC | 4 cut(s) | 75, 212, 324, 447 |
| ScaI | AGTACT | 2 cut(s) | 596, 765 |
| ScrFI | CCNGG | 5 cut(s) | 165, 935, 1256, 1383, 1458 |
| SduI | GDGCHC | 2 cut(s) | 12, 624 |
| SfaNI | GCATC | 3 cut(s) | 417, 736, 927 |
| SfoI | GGCGCC | 1 cut(s) | 375 |
| Sfr274I | CTCGAG | 1 cut(s) | 571 |
| Sfr303I | CCGCGG | 1 cut(s) | 372 |
| SfuI | TTCGAA | 1 cut(s) | 454 |
| SgrBI | CCGCGG | 1 cut(s) | 372 |
| SinI | GGWCC | 3 cut(s) | 75, 324, 447 |
| SlaI | CTCGAG | 1 cut(s) | 571 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 413 |
| SmlI | CTYRAG | 2 cut(s) | 427, 571 |
| SmoI | CTYRAG | 2 cut(s) | 427, 571 |
| Sse9I | AATT | 7 cut(s) | 611, 632, 912, 1025, 1374, 1426, 1451 |
| SspDI | GGCGCC | 1 cut(s) | 373 |
| SspI | AATATT | 1 cut(s) | 1071 |
| SspMI | CTAG | 8 cut(s) | 155, 321, 584, 722, 801, 977, 1226, 1421 |
| SstI | GAGCTC | 2 cut(s) | 12, 624 |
| StyD4I | CCNGG | 5 cut(s) | 163, 933, 1254, 1381, 1456 |
| StyI | CCWWGG | 2 cut(s) | 320, 1010 |
| TaaI | ACNGT | 4 cut(s) | 383, 763, 1316, 1405 |
| TaiI | ACGT | 6 cut(s) | 280, 366, 567, 864, 942, 968 |
| TaqI | TCGA | 5 cut(s) | 336, 454, 572, 1172, 1344 |
| TaqII | GACCGA | 1 cut(s) | 435 |
| TasI | AATT | 7 cut(s) | 611, 632, 912, 1025, 1374, 1426, 1451 |
| TatI | WGTACW | 3 cut(s) | 37, 594, 763 |
| TauI | GCSGC | 4 cut(s) | 371, 374, 397, 581 |
| TfiI | GAWTC | 5 cut(s) | 421, 997, 1259, 1387, 1493 |
| Tru1I | TTAA | 6 cut(s) | 615, 1073, 1119, 1311, 1322, 1505 |
| Tru9I | TTAA | 6 cut(s) | 615, 1073, 1119, 1311, 1322, 1505 |
| TscAI | CASTG | 2 cut(s) | 1119, 1321 |
| TseFI | GTSAC | 1 cut(s) | 383 |
| TseI | GCWGC | 2 cut(s) | 272, 1432 |
| Tsp45I | GTSAC | 1 cut(s) | 383 |
| TspDTI | ATGAA | 6 cut(s) | 302, 647, 1502, 1502, 1506, 1542 |
| TspGWI | ACGGA | 2 cut(s) | 971, 1344 |
| TspRI | CASTG | 2 cut(s) | 1119, 1321 |
| Tth111I | GACNNNGTC | 1 cut(s) | 566 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 683 |
| VpaK11BI | GGWCC | 3 cut(s) | 75, 324, 447 |
| XapI | RAATTY | 4 cut(s) | 611, 632, 1374, 1426 |
| XbaI | TCTAGA | 1 cut(s) | 976 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 684 |
| XhoI | CTCGAG | 1 cut(s) | 571 |
| XmaJI | CCTAGG | 1 cut(s) | 320 |
| XmiI | GTMKAC | 1 cut(s) | 968 |
| XspI | CTAG | 8 cut(s) | 155, 321, 584, 722, 801, 977, 1226, 1421 |
| ZraI | GACGTC | 2 cut(s) | 565, 966 |
| ZrmI | AGTACT | 2 cut(s) | 596, 765 |
| Zsp2I | ATGCAT | 1 cut(s) | 751 |