Rh5CG283100

Cytochrome p450

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
Physical Location & Seq
Reverse (-)
30961566 .. 30962132
567 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG283100.1

Sequence Viewer

Length: 567 bp
ATGTCTGAGCTTATGAAGAATCCAAGGGTGATGAAAAAACTGCAAAATGAGGTGAGGGGAGGAGTTGGAAACAAAGAAGACATTACAGAGGATGATTTGGCTGGAATGCACTACTTGAAGGCAGTGATCAAAGAGACTTTTCGCTTACATCCTCCATTTCCATTACTTATTCCCAGGATGTCCAACCAAAATGTGAAAATCAACGGTTACAACATTAAGGCTAACACACAAGTTATGGTGAATGCTTGGGCGATTGGGAGAGATCCCAATTCATTTATAAATGCCAAGCAGTATGAGCCTGAAAGATTCTTAAACAGTGCCATAGATTATAAAGGGAATGACTTCGAATTAATTCCATTTGGTTCTGGTAGACGAGGATGCCCAGGAATGCATTTTGCCGTGGTTGTGGTAGAGATTGTCCTGGCAAATATTGTTCACAAGTTTGACTGGATATTGCCTGATGGTGCAAGAGCGGAGGACTTAGACATGAGTGAATCCACTGGCATAACTGCACATAGAAAATATCCTCTCAAAGTGGTTACCAAACCGTATTTTCCCTGCTTCTGA

Protein Analysis

188

Amino Acids

21.32

Weight (kDa)

8.82

Isoelectric Point (pI)

42.32

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 3 - 168 8.1e-55 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000061)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G48270 AT3G48280 AT3G48290 AT3G48290 AT3G48300 AT3G48300 AT3G48310 AT3G48320 AT4G20235 AT4G20235
fragaria_vesca FvH4_2g12910 FvH4_2g12910 FvH4_2g12910 FvH4_2g12910 FvH4_2g12910 FvH4_2g36190 FvH4_3g14160 FvH4_3g14210 FvH4_3g14260 FvH4_3g14260 FvH4_3g21100 FvH4_3g21380 FvH4_4g24460 FvH4_4g24500 FvH4_5g06571 FvH4_5g06571 FvH4_5g06571 FvH4_5g06571 FvH4_5g06572 FvH4_5g06573 FvH4_5g06574 FvH4_5g06575 FvH4_5g06576 FvH4_5g06577 FvH4_5g06577 FvH4_5g07540 FvH4_5g07550 FvH4_5g07560 FvH4_5g07570 FvH4_5g29491 FvH4_5g29492 FvH4_6g23870 FvH4_6g23880 FvH4_6g26870 FvH4_7g11861 FvH4_7g11862 FvH4_7g13050 FvH4_7g13060 FvH4_7g13080 FvH4_7g13080 FvH4_7g22630 FvH4_7g22650 FvH4_7g22651 FvH4_7g23020
malus_domestica MD03G1207400.v1.1 MD03G1214800.v1.1 MD03G1218500.v1.1 MD06G1163100.v1.1 MD06G1163300.v1.1 MD06G1163400.v1.1 MD06G1163500.v1.1 MD06G1163600.v1.1 MD06G1163800.v1.1 MD06G1164000.v1.1 MD06G1164100.v1.1 MD06G1224400.v1.1 MD08G1222800.v1.1 MD08G1222900.v1.1 MD08G1223100.v1.1 MD11G1091500.v1.1 MD11G1091800.v1.1 MD14G1163200.v1.1 MD14G1169000.v1.1 MD15G1207200.v1.1 MD15G1207300.v1.1 MD17G1259400.v1.1
prunus_persica Prupe.4G198100_v2.0.a1 Prupe.4G199100_v2.0.a1 Prupe.4G199400_v2.0.a1 Prupe.4G199800_v2.0.a1 Prupe.4G225200_v2.0.a1 Prupe.4G239100_v2.0.a1 Prupe.5G156600_v2.0.a1 Prupe.5G163500_v2.0.a1 Prupe.7G209500_v2.0.a1 Prupe.I003400_v2.0.a1
pyrus_communis pycom03g16340 pycom06g14600 pycom06g14610 pycom06g14620 pycom06g14630 pycom06g14640 pycom06g14670 pycom06g14690 pycom08g19390 pycom08g19400 pycom08g19410 pycom11g07600 pycom11g07610 pycom11g07620 pycom11g07660 pycom14g13580 pycom14g14080 pycom14g14100 pycom14g14110 pycom15g18380 pycom17g26080
rosa_chinensis RchiOBHm_Chr1g0339441 RchiOBHm_Chr1g0339451 RchiOBHm_Chr1g0352191 RchiOBHm_Chr1g0368221 RchiOBHm_Chr2g0129531 RchiOBHm_Chr2g0129541 RchiOBHm_Chr3g0477631 RchiOBHm_Chr3g0482551 RchiOBHm_Chr3g0482561 RchiOBHm_Chr3g0482571 RchiOBHm_Chr4g0411601 RchiOBHm_Chr4g0422181 RchiOBHm_Chr5g0036661 RchiOBHm_Chr5g0036731 RchiOBHm_Chr6g0274021 RchiOBHm_Chr7g0190921 RchiOBHm_Chr7g0190931 RchiOBHm_Chr7g0190941 RchiOBHm_Chr7g0190951 RchiOBHm_Chr7g0190961 RchiOBHm_Chr7g0190971 RchiOBHm_Chr7g0191001 RchiOBHm_Chr7g0191011 RchiOBHm_Chr7g0191021 RchiOBHm_Chr7g0192181 RchiOBHm_Chr7g0192191 RchiOBHm_Chr7g0192201 RchiOBHm_Chr7g0192221 RchiOBHm_Chr7g0192231 RchiOBHm_Chr7g0192281 RchiOBHm_Chr7g0197311
rosa_laevigata RLG00000003942 RLG00000004345 RLG00000004379 RLG00000004383 RLG00000004384 RLG00000004385 RLG00000004387 RLG00000004388 RLG00000004389 RLG00000004480 RLG00000004481 RLG00000004482 RLG00000004483 RLG00000004485 RLG00000008342 RLG00000008401 RLG00000013583 RLG00000017044 RLG00000027229 RLG00000028349 RLG00000028350 RLG00000028353 RLG00000028820 RLG00000033707 RLG00000033710
rosa_multiflora Rmu_co8020340.1_g000001 Rmu_co8096640.1_g000001 Rmu_co8214930.1_g000001 Rmu_co8223272.1_g000001 Rmu_co8282535.1_g000001 Rmu_co8343567.1_g000001 Rmu_co8404191.1_g000001 Rmu_co8455157.1_g000001 Rmu_sc0000062.1_g000028 Rmu_sc0000082.1_g000091 Rmu_sc0000509.1_g000017 Rmu_sc0000775.1_g000001 Rmu_sc0000999.1_g000034 Rmu_sc0001559.1_g000004 Rmu_sc0001559.1_g000009 Rmu_sc0002164.1_g000001 Rmu_sc0002164.1_g000005 Rmu_sc0002164.1_g000007 Rmu_sc0002164.1_g000008 Rmu_sc0002164.1_g000009 Rmu_sc0002164.1_g000019 Rmu_sc0002247.1_g000009 Rmu_sc0002373.1_g000002 Rmu_sc0002373.1_g000003 Rmu_sc0002944.1_g000059 Rmu_sc0003930.1_g000004 Rmu_sc0004958.1_g000001 Rmu_sc0005197.1_g000014 Rmu_sc0005898.1_g000008 Rmu_sc0005898.1_g000009 Rmu_sc0005898.1_g000015 Rmu_sc0006059.1_g000004 Rmu_sc0006059.1_g000010 Rmu_sc0006903.1_g000007 Rmu_sc0006903.1_g000008 Rmu_sc0006968.1_g000001 Rmu_sc0011009.1_g000009 Rmu_sc0022852.1_g000002 Rmu_sc0033854.1_g000001 Rmu_ssc0000421.1_g000057 Rmu_ssc0000421.1_g000067 Rmu_ssc0000421.1_g000069 Rmu_ssc0000421.1_g000072 Rmu_ssc0000421.1_g000081 Rmu_ssc0000421.1_g000086
rosa_roxburghii Rroxscaffold_158G00443680 Rroxscaffold_158G00443710 Rroxscaffold_158G00443720 Rroxscaffold_158G00443740 Rroxscaffold_1G00034950 Rroxscaffold_1G00044240 Rroxscaffold_1G00044270 Rroxscaffold_3G00241380 Rroxscaffold_3G00247000 Rroxscaffold_3G00263120 Rroxscaffold_3G00263150 Rroxscaffold_3G00263160 Rroxscaffold_3G00263170 Rroxscaffold_3G00263180 Rroxscaffold_3G00263190 Rroxscaffold_3G00263210 Rroxscaffold_3G00263230 Rroxscaffold_3G00263260 Rroxscaffold_3G00264110 Rroxscaffold_3G00264130 Rroxscaffold_3G00264160 Rroxscaffold_3G00264180 Rroxscaffold_3G00264200 Rroxscaffold_4G00288750 Rroxscaffold_4G00303110 Rroxscaffold_4G00303120 Rroxscaffold_4G00322280 Rroxscaffold_5G00356200 Rroxscaffold_6G00399150 Rroxscaffold_6G00399290 Rroxscaffold_7G00194770
rosa_rugosa Rorug01G0225300 Rorug01G0225400 Rorug01G0225800 Rorug01G0226000 Rorug01G0339400 Rorug01G0451500 Rorug03G0196900 Rorug03G0294900 Rorug04G0107500 Rorug04G0107600 Rorug04G0129700 Rorug04G0178000 Rorug05G0144900.1 Rorug05G0145000 Rorug05G0228000 Rorug05G0228600 Rorug06G0078300 Rorug06G0508000 Rorug06G0508100 Rorug06G0508100 Rorug06G0508400 Rorug06G0513400 Rorug07G0000100 Rorug07G0000200 Rorug07G0000300 Rorug07G0000500 Rorug07G0000800
rosa_samantha Rh1BG060400 Rh1BG210300 Rh1BG210700 Rh1BG210800 Rh1BG309800 Rh1CG223800 Rh1CG224200 Rh1CG325200 Rh1DG237000 Rh1DG237400 Rh1DG341600 Rh2DG365700 Rh3AG212500 Rh3AG248400 Rh3CG239800 Rh3DG239300 Rh4AG169300 Rh4BG166200 Rh4BG240500 Rh4BG240600 Rh4DG163600 Rh5AG249600 Rh5AG249900 Rh5AG250000 Rh5CG283100 Rh5CG283200 Rh5CG283400 Rh5DG259200 Rh5DG259800 Rh6BG197700 Rh6CG197800 Rh6DG189400 Rh7AG114900 Rh7AG115000 Rh7AG115200 Rh7AG115300 Rh7AG115400 Rh7AG115500 Rh7AG123900 Rh7AG124100 Rh7AG124300 Rh7BG117200 Rh7BG117400 Rh7BG118400 Rh7BG125400 Rh7BG125600 Rh7BG125700 Rh7BG125800 Rh7BG125900 Rh7BG126000 Rh7BG126400 Rh7BG126600 Rh7BG126700 Rh7BG166200 Rh7DG118600 Rh7DG118700 Rh7DG118900 Rh7DG119000 Rh7DG119100 Rh7DG127400 Rh7DG127600 Rh7DG127700 Rh7DG127900 Rh7DG128200
rosa_wichuraiana Rw1G013270 Rw1G020790 Rw2G027890 Rw2G028040 Rw3G019240 Rw4G014070 Rw4G020540 Rw5G021320 Rw5G022970 Rw6G016920 Rw7G010020 Rw7G010040 Rw7G010580 Rw7G010590 Rw7G010600 Rw7G010610 Rw7G010620 Rw7G010630 Rw7G010640 Rw7G010690

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 278, 330
AccBSI CCGCTC 1 cut(s) 473
AccI GTMKAC 1 cut(s) 370
AciI CCGC 1 cut(s) 473
AclWI GGATC 1 cut(s) 257
AgsI TTSAA 1 cut(s) 118
AjnI CCWGG 3 cut(s) 173, 382, 420
AluBI AGCT 1 cut(s) 10
AluI AGCT 1 cut(s) 10
Alw26I GTCTC 1 cut(s) 128
AlwI GGATC 1 cut(s) 257
AseI ATTAAT 1 cut(s) 350
Asp700I GAANNNNTTC 2 cut(s) 341, 351
AsuHPI GGTGA 3 cut(s) 40, 64, 250
AsuII TTCGAA 1 cut(s) 345
BbsI GAAGAC 1 cut(s) 84
BccI CCATC 1 cut(s) 455
BceAI ACGGC 1 cut(s) 383
BciT130I CCWGG 3 cut(s) 175, 384, 422
BclI TGATCA 1 cut(s) 126
BcoDI GTCTC 1 cut(s) 128
Bme1390I CCNGG 3 cut(s) 175, 384, 422
BmrFI CCNGG 3 cut(s) 175, 384, 422
BmsI GCATC 1 cut(s) 368
BpiI GAAGAC 1 cut(s) 84
Bpu14I TTCGAA 1 cut(s) 345
BsaJI CCNNGG 4 cut(s) 23, 173, 382, 399
Bse1I ACTGG 2 cut(s) 452, 505
BseBI CCWGG 3 cut(s) 175, 384, 422
BseDI CCNNGG 4 cut(s) 23, 173, 382, 399
BseGI GGATG 4 cut(s) 97, 148, 183, 383
BseNI ACTGG 2 cut(s) 452, 505
BseRI GAGGAG 1 cut(s) 75
BsgI GTGCAG 1 cut(s) 495
BsmAI GTCTC 1 cut(s) 128
BsmI GAATGC 3 cut(s) 111, 247, 393
Bsp119I TTCGAA 1 cut(s) 345
Bsp143I GATC 2 cut(s) 126, 262
BspACI CCGC 1 cut(s) 473
BspPI GGATC 1 cut(s) 257
BspT104I TTCGAA 1 cut(s) 345
BsrBI CCGCTC 1 cut(s) 473
BsrI ACTGG 2 cut(s) 452, 505
BssECI CCNNGG 4 cut(s) 23, 173, 382, 399
BssMI GATC 2 cut(s) 126, 262
BssT1I CCWWGG 1 cut(s) 23
Bst2UI CCWGG 3 cut(s) 175, 384, 422
Bst4CI ACNGT 3 cut(s) 206, 317, 549
BstBI TTCGAA 1 cut(s) 345
BstDEI CTNAG 2 cut(s) 6, 481
BstDSI CCRYGG 1 cut(s) 399
BstEII GGTNACC 1 cut(s) 538
BstF5I GGATG 4 cut(s) 97, 148, 183, 383
BstKTI GATC 2 cut(s) 129, 265
BstMAI GTCTC 1 cut(s) 128
BstMBI GATC 2 cut(s) 126, 262
BstMWI GCNNNNNNNGC 1 cut(s) 295
BstNI CCWGG 3 cut(s) 175, 384, 422
BstPI GGTNACC 1 cut(s) 538
BstSCI CCNGG 3 cut(s) 173, 382, 420
BstV2I GAAGAC 1 cut(s) 84
BstX2I RGATCY 1 cut(s) 262
BstYI RGATCY 1 cut(s) 262
BtgI CCRYGG 1 cut(s) 399
BtsCI GGATG 4 cut(s) 97, 148, 183, 383
BtsI GCAGTG 1 cut(s) 129
BtsIMutI CAGTG 3 cut(s) 129, 322, 498
CviAII CATG 1 cut(s) 487
CviJI RGCY 4 cut(s) 10, 101, 221, 298
CviKI_1 RGCY 4 cut(s) 10, 101, 221, 298
DdeI CTNAG 2 cut(s) 6, 481
DpnI GATC 2 cut(s) 128, 264
DpnII GATC 2 cut(s) 126, 262
Eco130I CCWWGG 1 cut(s) 23
Eco91I GGTNACC 1 cut(s) 538
EcoO65I GGTNACC 1 cut(s) 538
EcoRII CCWGG 3 cut(s) 173, 382, 420
EcoT14I CCWWGG 1 cut(s) 23
EcoT22I ATGCAT 1 cut(s) 393
ErhI CCWWGG 1 cut(s) 23
FaeI CATG 1 cut(s) 490
FaiI YATR 9 cut(s) 14, 236, 278, 294, 323, 330, 488, 506, 516
FatI CATG 1 cut(s) 486
FbaI TGATCA 1 cut(s) 126
FblI GTMKAC 1 cut(s) 370
FokI GGATG 4 cut(s) 104, 135, 190, 390
Hin1II CATG 1 cut(s) 490
HinfI GANTC 3 cut(s) 19, 306, 494
HphI GGTGA 3 cut(s) 40, 64, 250
Hpy166II GTNNAC 2 cut(s) 371, 436
Hpy188I TCNGA 2 cut(s) 7, 566
Hpy8I GTNNAC 2 cut(s) 371, 436
HpyAV CCTTC 1 cut(s) 112
HpyCH4III ACNGT 3 cut(s) 206, 317, 549
HpyCH4V TGCA 5 cut(s) 43, 109, 391, 467, 512
HpyF10VI GCNNNNNNNGC 1 cut(s) 295
HpyF3I CTNAG 2 cut(s) 6, 481
Hsp92II CATG 1 cut(s) 490
Ksp22I TGATCA 1 cut(s) 126
Kzo9I GATC 2 cut(s) 126, 262
LweI GCATC 1 cut(s) 368
MaeIII GTNAC 2 cut(s) 206, 538
MalI GATC 2 cut(s) 128, 264
MbiI CCGCTC 1 cut(s) 473
MboI GATC 2 cut(s) 126, 262
MboII GAAGA 2 cut(s) 28, 89
MflI RGATCY 1 cut(s) 262
MluCI AATT 3 cut(s) 268, 347, 351
MmeI TCCRAC 2 cut(s) 46, 207
MnlI CCTC 8 cut(s) 43, 48, 53, 82, 162, 368, 469, 537
Mph1103I ATGCAT 1 cut(s) 393
MroXI GAANNNNTTC 2 cut(s) 341, 351
MseI TTAA 3 cut(s) 216, 311, 350
MspR9I CCNGG 3 cut(s) 175, 384, 422
Mva1269I GAATGC 3 cut(s) 111, 247, 393
MvaI CCWGG 3 cut(s) 175, 384, 422
MwoI GCNNNNNNNGC 1 cut(s) 295
NdeII GATC 2 cut(s) 126, 262
NlaIII CATG 1 cut(s) 490
NsiI ATGCAT 1 cut(s) 393
NspV TTCGAA 1 cut(s) 345
PctI GAATGC 3 cut(s) 111, 247, 393
PdmI GAANNNNTTC 2 cut(s) 341, 351
PfeI GAWTC 3 cut(s) 19, 306, 494
PshBI ATTAAT 1 cut(s) 350
PsiI TTATAA 2 cut(s) 278, 330
Psp6I CCWGG 3 cut(s) 173, 382, 420
PspEI GGTNACC 1 cut(s) 538
PspGI CCWGG 3 cut(s) 173, 382, 420
PsuI RGATCY 1 cut(s) 262
SaqAI TTAA 3 cut(s) 216, 311, 350
Sau3AI GATC 2 cut(s) 126, 262
ScrFI CCNGG 3 cut(s) 175, 384, 422
SetI ASST 2 cut(s) 12, 54
SfaNI GCATC 1 cut(s) 368
SfuI TTCGAA 1 cut(s) 345
Sse9I AATT 3 cut(s) 268, 347, 351
SsiI CCGC 1 cut(s) 473
SspI AATATT 1 cut(s) 430
StyD4I CCNGG 3 cut(s) 173, 382, 420
StyI CCWWGG 1 cut(s) 23
TaaI ACNGT 3 cut(s) 206, 317, 549
TaqI TCGA 1 cut(s) 345
TasI AATT 3 cut(s) 268, 347, 351
TfiI GAWTC 3 cut(s) 19, 306, 494
Tru1I TTAA 3 cut(s) 216, 311, 350
Tru9I TTAA 3 cut(s) 216, 311, 350
TscAI CASTG 3 cut(s) 129, 322, 505
TspDTI ATGAA 3 cut(s) 29, 47, 261
TspRI CASTG 3 cut(s) 129, 322, 505
VspI ATTAAT 1 cut(s) 350
XmiI GTMKAC 1 cut(s) 370
XmnI GAANNNNTTC 2 cut(s) 341, 351
Zsp2I ATGCAT 1 cut(s) 393
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.