Rh7BG126700

Cytochrome p450

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
Physical Location & Seq
Forward (+)
9396549 .. 9396920
372 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG126700.1

Sequence Viewer

Length: 372 bp
ATGGTCATAATAAATGCCTGGACAATAGGAAGGGACCCTTCTCTGTGCGATGGACCAGAGGAGTTTCAACCGGATAGATTTATGAATTCTTGTATGGATTTCACAGGACAAGAGTTCCAGATTATCCCATTTGGAGCTGGCAGGAGATGTTGCCAAGGAATCCTATTTTCCATGATCACTACTGAGCTTGTGCTAGCAAATCTTGTGCACAAGTTTGAGTGGGCATTGCCTAGTGGAGCCAGAGCTGAGGATATGAACATGACAGAACGCAATGGTCTTGTCATCCACAGAGATGTTCCTCTTCTAGCTATGGCAGCACCAAGGTCTTCTTCAATGTACTTTCTCTTCTTTAATGTTTTTATGTTACTCTAG
Functional Annotation

Protein Analysis

123

Amino Acids

13.96

Weight (kDa)

5.0

Isoelectric Point (pI)

46.68

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 2 - 96 5e-20 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000061)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G48270 AT3G48280 AT3G48290 AT3G48290 AT3G48300 AT3G48300 AT3G48310 AT3G48320 AT4G20235 AT4G20235
fragaria_vesca FvH4_2g12910 FvH4_2g12910 FvH4_2g12910 FvH4_2g12910 FvH4_2g12910 FvH4_2g36190 FvH4_3g14160 FvH4_3g14210 FvH4_3g14260 FvH4_3g14260 FvH4_3g21100 FvH4_3g21380 FvH4_4g24460 FvH4_4g24500 FvH4_5g06571 FvH4_5g06571 FvH4_5g06571 FvH4_5g06571 FvH4_5g06572 FvH4_5g06573 FvH4_5g06574 FvH4_5g06575 FvH4_5g06576 FvH4_5g06577 FvH4_5g06577 FvH4_5g07540 FvH4_5g07550 FvH4_5g07560 FvH4_5g07570 FvH4_5g29491 FvH4_5g29492 FvH4_6g23870 FvH4_6g23880 FvH4_6g26870 FvH4_7g11861 FvH4_7g11862 FvH4_7g13050 FvH4_7g13060 FvH4_7g13080 FvH4_7g13080 FvH4_7g22630 FvH4_7g22650 FvH4_7g22651 FvH4_7g23020
malus_domestica MD03G1207400.v1.1 MD03G1214800.v1.1 MD03G1218500.v1.1 MD06G1163100.v1.1 MD06G1163300.v1.1 MD06G1163400.v1.1 MD06G1163500.v1.1 MD06G1163600.v1.1 MD06G1163800.v1.1 MD06G1164000.v1.1 MD06G1164100.v1.1 MD06G1224400.v1.1 MD08G1222800.v1.1 MD08G1222900.v1.1 MD08G1223100.v1.1 MD11G1091500.v1.1 MD11G1091800.v1.1 MD14G1163200.v1.1 MD14G1169000.v1.1 MD15G1207200.v1.1 MD15G1207300.v1.1 MD17G1259400.v1.1
prunus_persica Prupe.4G198100_v2.0.a1 Prupe.4G199100_v2.0.a1 Prupe.4G199400_v2.0.a1 Prupe.4G199800_v2.0.a1 Prupe.4G225200_v2.0.a1 Prupe.4G239100_v2.0.a1 Prupe.5G156600_v2.0.a1 Prupe.5G163500_v2.0.a1 Prupe.7G209500_v2.0.a1 Prupe.I003400_v2.0.a1
pyrus_communis pycom03g16340 pycom06g14600 pycom06g14610 pycom06g14620 pycom06g14630 pycom06g14640 pycom06g14670 pycom06g14690 pycom08g19390 pycom08g19400 pycom08g19410 pycom11g07600 pycom11g07610 pycom11g07620 pycom11g07660 pycom14g13580 pycom14g14080 pycom14g14100 pycom14g14110 pycom15g18380 pycom17g26080
rosa_chinensis RchiOBHm_Chr1g0339441 RchiOBHm_Chr1g0339451 RchiOBHm_Chr1g0352191 RchiOBHm_Chr1g0368221 RchiOBHm_Chr2g0129531 RchiOBHm_Chr2g0129541 RchiOBHm_Chr3g0477631 RchiOBHm_Chr3g0482551 RchiOBHm_Chr3g0482561 RchiOBHm_Chr3g0482571 RchiOBHm_Chr4g0411601 RchiOBHm_Chr4g0422181 RchiOBHm_Chr5g0036661 RchiOBHm_Chr5g0036731 RchiOBHm_Chr6g0274021 RchiOBHm_Chr7g0190921 RchiOBHm_Chr7g0190931 RchiOBHm_Chr7g0190941 RchiOBHm_Chr7g0190951 RchiOBHm_Chr7g0190961 RchiOBHm_Chr7g0190971 RchiOBHm_Chr7g0191001 RchiOBHm_Chr7g0191011 RchiOBHm_Chr7g0191021 RchiOBHm_Chr7g0192181 RchiOBHm_Chr7g0192191 RchiOBHm_Chr7g0192201 RchiOBHm_Chr7g0192221 RchiOBHm_Chr7g0192231 RchiOBHm_Chr7g0192281 RchiOBHm_Chr7g0197311
rosa_laevigata RLG00000003942 RLG00000004345 RLG00000004379 RLG00000004383 RLG00000004384 RLG00000004385 RLG00000004387 RLG00000004388 RLG00000004389 RLG00000004480 RLG00000004481 RLG00000004482 RLG00000004483 RLG00000004485 RLG00000008342 RLG00000008401 RLG00000013583 RLG00000017044 RLG00000027229 RLG00000028349 RLG00000028350 RLG00000028353 RLG00000028820 RLG00000033707 RLG00000033710
rosa_multiflora Rmu_co8020340.1_g000001 Rmu_co8096640.1_g000001 Rmu_co8214930.1_g000001 Rmu_co8223272.1_g000001 Rmu_co8282535.1_g000001 Rmu_co8343567.1_g000001 Rmu_co8404191.1_g000001 Rmu_co8455157.1_g000001 Rmu_sc0000062.1_g000028 Rmu_sc0000082.1_g000091 Rmu_sc0000509.1_g000017 Rmu_sc0000775.1_g000001 Rmu_sc0000999.1_g000034 Rmu_sc0001559.1_g000004 Rmu_sc0001559.1_g000009 Rmu_sc0002164.1_g000001 Rmu_sc0002164.1_g000005 Rmu_sc0002164.1_g000007 Rmu_sc0002164.1_g000008 Rmu_sc0002164.1_g000009 Rmu_sc0002164.1_g000019 Rmu_sc0002247.1_g000009 Rmu_sc0002373.1_g000002 Rmu_sc0002373.1_g000003 Rmu_sc0002944.1_g000059 Rmu_sc0003930.1_g000004 Rmu_sc0004958.1_g000001 Rmu_sc0005197.1_g000014 Rmu_sc0005898.1_g000008 Rmu_sc0005898.1_g000009 Rmu_sc0005898.1_g000015 Rmu_sc0006059.1_g000004 Rmu_sc0006059.1_g000010 Rmu_sc0006903.1_g000007 Rmu_sc0006903.1_g000008 Rmu_sc0006968.1_g000001 Rmu_sc0011009.1_g000009 Rmu_sc0022852.1_g000002 Rmu_sc0033854.1_g000001 Rmu_ssc0000421.1_g000057 Rmu_ssc0000421.1_g000067 Rmu_ssc0000421.1_g000069 Rmu_ssc0000421.1_g000072 Rmu_ssc0000421.1_g000081 Rmu_ssc0000421.1_g000086
rosa_roxburghii Rroxscaffold_158G00443680 Rroxscaffold_158G00443710 Rroxscaffold_158G00443720 Rroxscaffold_158G00443740 Rroxscaffold_1G00034950 Rroxscaffold_1G00044240 Rroxscaffold_1G00044270 Rroxscaffold_3G00241380 Rroxscaffold_3G00247000 Rroxscaffold_3G00263120 Rroxscaffold_3G00263150 Rroxscaffold_3G00263160 Rroxscaffold_3G00263170 Rroxscaffold_3G00263180 Rroxscaffold_3G00263190 Rroxscaffold_3G00263210 Rroxscaffold_3G00263230 Rroxscaffold_3G00263260 Rroxscaffold_3G00264110 Rroxscaffold_3G00264130 Rroxscaffold_3G00264160 Rroxscaffold_3G00264180 Rroxscaffold_3G00264200 Rroxscaffold_4G00288750 Rroxscaffold_4G00303110 Rroxscaffold_4G00303120 Rroxscaffold_4G00322280 Rroxscaffold_5G00356200 Rroxscaffold_6G00399150 Rroxscaffold_6G00399290 Rroxscaffold_7G00194770
rosa_rugosa Rorug01G0225300 Rorug01G0225400 Rorug01G0225800 Rorug01G0226000 Rorug01G0339400 Rorug01G0451500 Rorug03G0196900 Rorug03G0294900 Rorug04G0107500 Rorug04G0107600 Rorug04G0129700 Rorug04G0178000 Rorug05G0144900.1 Rorug05G0145000 Rorug05G0228000 Rorug05G0228600 Rorug06G0078300 Rorug06G0508000 Rorug06G0508100 Rorug06G0508100 Rorug06G0508400 Rorug06G0513400 Rorug07G0000100 Rorug07G0000200 Rorug07G0000300 Rorug07G0000500 Rorug07G0000800
rosa_samantha Rh1BG060400 Rh1BG210300 Rh1BG210700 Rh1BG210800 Rh1BG309800 Rh1CG223800 Rh1CG224200 Rh1CG325200 Rh1DG237000 Rh1DG237400 Rh1DG341600 Rh2DG365700 Rh3AG212500 Rh3AG248400 Rh3CG239800 Rh3DG239300 Rh4AG169300 Rh4BG166200 Rh4BG240500 Rh4BG240600 Rh4DG163600 Rh5AG249600 Rh5AG249900 Rh5AG250000 Rh5CG283100 Rh5CG283200 Rh5CG283400 Rh5DG259200 Rh5DG259800 Rh6BG197700 Rh6CG197800 Rh6DG189400 Rh7AG114900 Rh7AG115000 Rh7AG115200 Rh7AG115300 Rh7AG115400 Rh7AG115500 Rh7AG123900 Rh7AG124100 Rh7AG124300 Rh7BG117200 Rh7BG117400 Rh7BG118400 Rh7BG125400 Rh7BG125600 Rh7BG125700 Rh7BG125800 Rh7BG125900 Rh7BG126000 Rh7BG126400 Rh7BG126600 Rh7BG126700 Rh7BG166200 Rh7DG118600 Rh7DG118700 Rh7DG118900 Rh7DG119000 Rh7DG119100 Rh7DG127400 Rh7DG127600 Rh7DG127700 Rh7DG127900 Rh7DG128200
rosa_wichuraiana Rw1G013270 Rw1G020790 Rw2G027890 Rw2G028040 Rw3G019240 Rw4G014070 Rw4G020540 Rw5G021320 Rw5G022970 Rw6G016920 Rw7G010020 Rw7G010040 Rw7G010580 Rw7G010590 Rw7G010600 Rw7G010610 Rw7G010620 Rw7G010630 Rw7G010640 Rw7G010690

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 85
AfaI GTAC 1 cut(s) 338
AgsI TTSAA 2 cut(s) 68, 333
AjnI CCWGG 1 cut(s) 17
AjuI GAANNNNNNNTTGG 2 cut(s) 313, 345
AluBI AGCT 4 cut(s) 137, 187, 245, 308
AluI AGCT 4 cut(s) 137, 187, 245, 308
Alw21I GWGCWC 1 cut(s) 210
Alw44I GTGCAC 1 cut(s) 206
ApaLI GTGCAC 1 cut(s) 206
ApeKI GCWGC 1 cut(s) 314
ApoI RAATTY 1 cut(s) 85
AspS9I GGNCC 2 cut(s) 34, 53
AsuNHI GCTAGC 1 cut(s) 193
AvaII GGWCC 2 cut(s) 34, 53
BaeGI GKGCMC 1 cut(s) 210
BarI GAAGNNNNNNTAC 2 cut(s) 329, 361
BbsI GAAGAC 1 cut(s) 318
Bbv12I GWGCWC 1 cut(s) 210
BbvCI CCTCAGC 1 cut(s) 246
BbvI GCAGC 1 cut(s) 326
BccI CCATC 1 cut(s) 44
BciT130I CCWGG 1 cut(s) 19
BclI TGATCA 1 cut(s) 174
BfaI CTAG 4 cut(s) 194, 231, 305, 370
BisI GCNGC 1 cut(s) 315
BlsI GCNGC 1 cut(s) 316
Bme1390I CCNGG 1 cut(s) 19
Bme18I GGWCC 2 cut(s) 34, 53
BmgT120I GGNCC 2 cut(s) 34, 53
BmiI GGNNCC 3 cut(s) 35, 36, 238
BmrFI CCNGG 1 cut(s) 19
BmtI GCTAGC 1 cut(s) 197
BpiI GAAGAC 1 cut(s) 318
Bpu10I CCTNAGC 1 cut(s) 246
BsaJI CCNNGG 2 cut(s) 154, 320
BsaWI WCCGGW 1 cut(s) 70
Bse3DI GCAATG 2 cut(s) 224, 277
BseBI CCWGG 1 cut(s) 19
BseDI CCNNGG 2 cut(s) 154, 320
BseGI GGATG 1 cut(s) 282
BseMI GCAATG 2 cut(s) 224, 277
BseMII CTCAG 2 cut(s) 174, 237
BseRI GAGGAG 1 cut(s) 74
BseSI GKGCMC 1 cut(s) 210
BseXI GCAGC 1 cut(s) 326
BsiHKAI GWGCWC 1 cut(s) 210
BsiSI CCGG 1 cut(s) 71
BslFI GGGAC 1 cut(s) 47
BsmFI GGGAC 1 cut(s) 47
Bsp1286I GDGCHC 1 cut(s) 210
Bsp143I GATC 1 cut(s) 174
BspCNI CTCAG 2 cut(s) 175, 238
BspLI GGNNCC 3 cut(s) 35, 36, 238
BspOI GCTAGC 1 cut(s) 197
BsrDI GCAATG 2 cut(s) 224, 277
BssECI CCNNGG 2 cut(s) 154, 320
BssMI GATC 1 cut(s) 174
BssT1I CCWWGG 2 cut(s) 154, 320
Bst2UI CCWGG 1 cut(s) 19
Bst6I CTCTTC 2 cut(s) 306, 350
BstC8I GCNNGC 2 cut(s) 139, 195
BstDEI CTNAG 2 cut(s) 183, 246
BstF5I GGATG 1 cut(s) 282
BstKTI GATC 1 cut(s) 177
BstMBI GATC 1 cut(s) 174
BstMWI GCNNNNNNNGC 1 cut(s) 314
BstNI CCWGG 1 cut(s) 19
BstSCI CCNGG 1 cut(s) 17
BstSLI GKGCMC 1 cut(s) 210
BstV1I GCAGC 1 cut(s) 326
BstV2I GAAGAC 1 cut(s) 318
BtgZI GCGATG 1 cut(s) 63
BtsCI GGATG 1 cut(s) 282
Cac8I GCNNGC 2 cut(s) 139, 195
Cfr13I GGNCC 2 cut(s) 34, 53
Csp6I GTAC 1 cut(s) 337
CviAII CATG 2 cut(s) 172, 259
CviJI RGCY 5 cut(s) 137, 187, 239, 245, 308
CviKI_1 RGCY 5 cut(s) 137, 187, 239, 245, 308
CviQI GTAC 1 cut(s) 337
DdeI CTNAG 2 cut(s) 183, 246
DpnI GATC 1 cut(s) 176
DpnII GATC 1 cut(s) 174
Eam1104I CTCTTC 2 cut(s) 306, 350
EarI CTCTTC 2 cut(s) 306, 350
Eco130I CCWWGG 2 cut(s) 154, 320
Eco47I GGWCC 2 cut(s) 34, 53
EcoO109I RGGNCCY 1 cut(s) 34
EcoRI GAATTC 1 cut(s) 85
EcoRII CCWGG 1 cut(s) 17
EcoT14I CCWWGG 2 cut(s) 154, 320
ErhI CCWWGG 2 cut(s) 154, 320
FaeI CATG 2 cut(s) 175, 262
FaiI YATR 8 cut(s) 8, 83, 95, 173, 254, 260, 311, 362
FalI AAGNNNNNCTT 4 cut(s) 22, 54, 313, 345
FaqI GGGAC 1 cut(s) 47
FatI CATG 2 cut(s) 171, 258
FbaI TGATCA 1 cut(s) 174
Fnu4HI GCNGC 1 cut(s) 315
FokI GGATG 1 cut(s) 269
Fsp4HI GCNGC 1 cut(s) 315
FspBI CTAG 4 cut(s) 194, 231, 305, 370
GluI GCNGC 1 cut(s) 315
HapII CCGG 1 cut(s) 71
Hin1II CATG 2 cut(s) 175, 262
HinfI GANTC 1 cut(s) 159
HpaII CCGG 1 cut(s) 71
Hpy166II GTNNAC 1 cut(s) 208
Hpy188III TCNNGA 1 cut(s) 118
Hpy8I GTNNAC 1 cut(s) 208
HpyAV CCTTC 2 cut(s) 24, 48
HpyCH4V TGCA 1 cut(s) 208
HpyF10VI GCNNNNNNNGC 1 cut(s) 314
HpyF3I CTNAG 2 cut(s) 183, 246
Hsp92II CATG 2 cut(s) 175, 262
KflI GGGWCCC 1 cut(s) 34
Ksp22I TGATCA 1 cut(s) 174
Kzo9I GATC 1 cut(s) 174
LmnI GCTCC 2 cut(s) 134, 236
LpnPI CCDG 9 cut(s) 4, 31, 69, 84, 90, 123, 127, 131, 253
Lsp1109I GCAGC 1 cut(s) 326
MaeI CTAG 4 cut(s) 194, 231, 305, 370
MaeIII GTNAC 1 cut(s) 363
MalI GATC 1 cut(s) 176
MboI GATC 1 cut(s) 174
MboII GAAGA 4 cut(s) 293, 318, 321, 337
MhlI GDGCHC 1 cut(s) 210
MluCI AATT 1 cut(s) 85
MnlI CCTC 3 cut(s) 52, 241, 309
MseI TTAA 1 cut(s) 351
MslI CAYNNNNRTG 1 cut(s) 291
MspI CCGG 1 cut(s) 71
MspR9I CCNGG 1 cut(s) 19
MvaI CCWGG 1 cut(s) 19
MwoI GCNNNNNNNGC 1 cut(s) 314
NdeII GATC 1 cut(s) 174
NheI GCTAGC 1 cut(s) 193
NlaIII CATG 2 cut(s) 175, 262
NlaIV GGNNCC 3 cut(s) 35, 36, 238
PfeI GAWTC 1 cut(s) 159
PkrI GCNGC 1 cut(s) 316
PpuMI RGGWCCY 1 cut(s) 34
Psp5II RGGWCCY 1 cut(s) 34
Psp6I CCWGG 1 cut(s) 17
PspGI CCWGG 1 cut(s) 17
PspN4I GGNNCC 3 cut(s) 35, 36, 238
PspPI GGNCC 2 cut(s) 34, 53
PspPPI RGGWCCY 1 cut(s) 34
RsaI GTAC 1 cut(s) 338
RsaNI GTAC 1 cut(s) 337
RseI CAYNNNNRTG 1 cut(s) 291
SaqAI TTAA 1 cut(s) 351
SatI GCNGC 1 cut(s) 315
Sau3AI GATC 1 cut(s) 174
Sau96I GGNCC 2 cut(s) 34, 53
ScrFI CCNGG 1 cut(s) 19
SduI GDGCHC 1 cut(s) 210
SetI ASST 5 cut(s) 139, 189, 247, 310, 326
SinI GGWCC 2 cut(s) 34, 53
SmiMI CAYNNNNRTG 1 cut(s) 291
Sse9I AATT 1 cut(s) 85
SspMI CTAG 4 cut(s) 194, 231, 305, 370
StyD4I CCNGG 1 cut(s) 17
StyI CCWWGG 2 cut(s) 154, 320
TasI AATT 1 cut(s) 85
TatI WGTACW 1 cut(s) 336
TfiI GAWTC 1 cut(s) 159
Tru1I TTAA 1 cut(s) 351
Tru9I TTAA 1 cut(s) 351
TseI GCWGC 1 cut(s) 314
TspDTI ATGAA 2 cut(s) 98, 269
VneI GTGCAC 1 cut(s) 206
VpaK11BI GGWCC 2 cut(s) 34, 53
XapI RAATTY 1 cut(s) 85
XspI CTAG 4 cut(s) 194, 231, 305, 370
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.