Rroxscaffold_3G00264200

Cytochrome p450

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
Physical Location & Seq
Reverse (-)
57931737 .. 57932725
989 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00264200.1

Sequence Viewer

Length: 666 bp
ATGCTAATAAAATCTCCCGCAAACAATGGCGGAGCTCATCAACCAAACCTTTCTTTCACTTGTACTTGTTGCCGTCTTCCTTATCCTATTATACAATTGGTTTTCCAGTACTACTACGAACGACTCGCCACCTTCTCCACCAAAGCTCCCCGTCATCGGAAACCTTCACCAACTAGGCTCTTCTCGAGGGGCTCTAGGGAGGAAGTGCTACACCGTGTCAGTGGTTTGGACGCGAAATTAGACAAGGTAGCCGAACGGTTTGATGAGTTTTTGAATAGAGTTGTCCAAGAGCATATGGATGATACTGGTCACAAGGAGGACGATGAAAAGGATTTTGTGGACGTTTTACTTGAGATTCAGCAGGAAAACTTGCTTGGTTTTCGTATTGACAAAGTTACCATAAAAGCTCTCATCTTGGATATGTTCCTTGCTGGGACGGATACCACCGCGAAGCTTCTAGAGTGGGAAATGGCTGAGATTTTAAAGCACCCGAAGGTCATGATCAAATTGCAGAATGAAGTAAGGGGTGTTAACAAAACTGGAGAAGACATATTAACAGAAATTGATATGCACTACTTGAAGGCGGTGATCAAGGAGACTCTTCGCTTACATCCTCCACTTTCACTGCTATTGCCTAGAATAGTAGAATGTCAATGCAAGATGTGA

Protein Analysis

221

Amino Acids

25.52

Weight (kDa)

6.71

Isoelectric Point (pI)

36.59

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 78 - 220 2.2e-28 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000061)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G48270 AT3G48280 AT3G48290 AT3G48290 AT3G48300 AT3G48300 AT3G48310 AT3G48320 AT4G20235 AT4G20235
fragaria_vesca FvH4_2g12910 FvH4_2g12910 FvH4_2g12910 FvH4_2g12910 FvH4_2g12910 FvH4_2g36190 FvH4_3g14160 FvH4_3g14210 FvH4_3g14260 FvH4_3g14260 FvH4_3g21100 FvH4_3g21380 FvH4_4g24460 FvH4_4g24500 FvH4_5g06571 FvH4_5g06571 FvH4_5g06571 FvH4_5g06571 FvH4_5g06572 FvH4_5g06573 FvH4_5g06574 FvH4_5g06575 FvH4_5g06576 FvH4_5g06577 FvH4_5g06577 FvH4_5g07540 FvH4_5g07550 FvH4_5g07560 FvH4_5g07570 FvH4_5g29491 FvH4_5g29492 FvH4_6g23870 FvH4_6g23880 FvH4_6g26870 FvH4_7g11861 FvH4_7g11862 FvH4_7g13050 FvH4_7g13060 FvH4_7g13080 FvH4_7g13080 FvH4_7g22630 FvH4_7g22650 FvH4_7g22651 FvH4_7g23020
malus_domestica MD03G1207400.v1.1 MD03G1214800.v1.1 MD03G1218500.v1.1 MD06G1163100.v1.1 MD06G1163300.v1.1 MD06G1163400.v1.1 MD06G1163500.v1.1 MD06G1163600.v1.1 MD06G1163800.v1.1 MD06G1164000.v1.1 MD06G1164100.v1.1 MD06G1224400.v1.1 MD08G1222800.v1.1 MD08G1222900.v1.1 MD08G1223100.v1.1 MD11G1091500.v1.1 MD11G1091800.v1.1 MD14G1163200.v1.1 MD14G1169000.v1.1 MD15G1207200.v1.1 MD15G1207300.v1.1 MD17G1259400.v1.1
prunus_persica Prupe.4G198100_v2.0.a1 Prupe.4G199100_v2.0.a1 Prupe.4G199400_v2.0.a1 Prupe.4G199800_v2.0.a1 Prupe.4G225200_v2.0.a1 Prupe.4G239100_v2.0.a1 Prupe.5G156600_v2.0.a1 Prupe.5G163500_v2.0.a1 Prupe.7G209500_v2.0.a1 Prupe.I003400_v2.0.a1
pyrus_communis pycom03g16340 pycom06g14600 pycom06g14610 pycom06g14620 pycom06g14630 pycom06g14640 pycom06g14670 pycom06g14690 pycom08g19390 pycom08g19400 pycom08g19410 pycom11g07600 pycom11g07610 pycom11g07620 pycom11g07660 pycom14g13580 pycom14g14080 pycom14g14100 pycom14g14110 pycom15g18380 pycom17g26080
rosa_chinensis RchiOBHm_Chr1g0339441 RchiOBHm_Chr1g0339451 RchiOBHm_Chr1g0352191 RchiOBHm_Chr1g0368221 RchiOBHm_Chr2g0129531 RchiOBHm_Chr2g0129541 RchiOBHm_Chr3g0477631 RchiOBHm_Chr3g0482551 RchiOBHm_Chr3g0482561 RchiOBHm_Chr3g0482571 RchiOBHm_Chr4g0411601 RchiOBHm_Chr4g0422181 RchiOBHm_Chr5g0036661 RchiOBHm_Chr5g0036731 RchiOBHm_Chr6g0274021 RchiOBHm_Chr7g0190921 RchiOBHm_Chr7g0190931 RchiOBHm_Chr7g0190941 RchiOBHm_Chr7g0190951 RchiOBHm_Chr7g0190961 RchiOBHm_Chr7g0190971 RchiOBHm_Chr7g0191001 RchiOBHm_Chr7g0191011 RchiOBHm_Chr7g0191021 RchiOBHm_Chr7g0192181 RchiOBHm_Chr7g0192191 RchiOBHm_Chr7g0192201 RchiOBHm_Chr7g0192221 RchiOBHm_Chr7g0192231 RchiOBHm_Chr7g0192281 RchiOBHm_Chr7g0197311
rosa_laevigata RLG00000003942 RLG00000004345 RLG00000004379 RLG00000004383 RLG00000004384 RLG00000004385 RLG00000004387 RLG00000004388 RLG00000004389 RLG00000004480 RLG00000004481 RLG00000004482 RLG00000004483 RLG00000004485 RLG00000008342 RLG00000008401 RLG00000013583 RLG00000017044 RLG00000027229 RLG00000028349 RLG00000028350 RLG00000028353 RLG00000028820 RLG00000033707 RLG00000033710
rosa_multiflora Rmu_co8020340.1_g000001 Rmu_co8096640.1_g000001 Rmu_co8214930.1_g000001 Rmu_co8223272.1_g000001 Rmu_co8282535.1_g000001 Rmu_co8343567.1_g000001 Rmu_co8404191.1_g000001 Rmu_co8455157.1_g000001 Rmu_sc0000062.1_g000028 Rmu_sc0000082.1_g000091 Rmu_sc0000509.1_g000017 Rmu_sc0000775.1_g000001 Rmu_sc0000999.1_g000034 Rmu_sc0001559.1_g000004 Rmu_sc0001559.1_g000009 Rmu_sc0002164.1_g000001 Rmu_sc0002164.1_g000005 Rmu_sc0002164.1_g000007 Rmu_sc0002164.1_g000008 Rmu_sc0002164.1_g000009 Rmu_sc0002164.1_g000019 Rmu_sc0002247.1_g000009 Rmu_sc0002373.1_g000002 Rmu_sc0002373.1_g000003 Rmu_sc0002944.1_g000059 Rmu_sc0003930.1_g000004 Rmu_sc0004958.1_g000001 Rmu_sc0005197.1_g000014 Rmu_sc0005898.1_g000008 Rmu_sc0005898.1_g000009 Rmu_sc0005898.1_g000015 Rmu_sc0006059.1_g000004 Rmu_sc0006059.1_g000010 Rmu_sc0006903.1_g000007 Rmu_sc0006903.1_g000008 Rmu_sc0006968.1_g000001 Rmu_sc0011009.1_g000009 Rmu_sc0022852.1_g000002 Rmu_sc0033854.1_g000001 Rmu_ssc0000421.1_g000057 Rmu_ssc0000421.1_g000067 Rmu_ssc0000421.1_g000069 Rmu_ssc0000421.1_g000072 Rmu_ssc0000421.1_g000081 Rmu_ssc0000421.1_g000086
rosa_roxburghii Rroxscaffold_158G00443680 Rroxscaffold_158G00443710 Rroxscaffold_158G00443720 Rroxscaffold_158G00443740 Rroxscaffold_1G00034950 Rroxscaffold_1G00044240 Rroxscaffold_1G00044270 Rroxscaffold_3G00241380 Rroxscaffold_3G00247000 Rroxscaffold_3G00263120 Rroxscaffold_3G00263150 Rroxscaffold_3G00263160 Rroxscaffold_3G00263170 Rroxscaffold_3G00263180 Rroxscaffold_3G00263190 Rroxscaffold_3G00263210 Rroxscaffold_3G00263230 Rroxscaffold_3G00263260 Rroxscaffold_3G00264110 Rroxscaffold_3G00264130 Rroxscaffold_3G00264160 Rroxscaffold_3G00264180 Rroxscaffold_3G00264200 Rroxscaffold_4G00288750 Rroxscaffold_4G00303110 Rroxscaffold_4G00303120 Rroxscaffold_4G00322280 Rroxscaffold_5G00356200 Rroxscaffold_6G00399150 Rroxscaffold_6G00399290 Rroxscaffold_7G00194770
rosa_rugosa Rorug01G0225300 Rorug01G0225400 Rorug01G0225800 Rorug01G0226000 Rorug01G0339400 Rorug01G0451500 Rorug03G0196900 Rorug03G0294900 Rorug04G0107500 Rorug04G0107600 Rorug04G0129700 Rorug04G0178000 Rorug05G0144900.1 Rorug05G0145000 Rorug05G0228000 Rorug05G0228600 Rorug06G0078300 Rorug06G0508000 Rorug06G0508100 Rorug06G0508100 Rorug06G0508400 Rorug06G0513400 Rorug07G0000100 Rorug07G0000200 Rorug07G0000300 Rorug07G0000500 Rorug07G0000800
rosa_samantha Rh1BG060400 Rh1BG210300 Rh1BG210700 Rh1BG210800 Rh1BG309800 Rh1CG223800 Rh1CG224200 Rh1CG325200 Rh1DG237000 Rh1DG237400 Rh1DG341600 Rh2DG365700 Rh3AG212500 Rh3AG248400 Rh3CG239800 Rh3DG239300 Rh4AG169300 Rh4BG166200 Rh4BG240500 Rh4BG240600 Rh4DG163600 Rh5AG249600 Rh5AG249900 Rh5AG250000 Rh5CG283100 Rh5CG283200 Rh5CG283400 Rh5DG259200 Rh5DG259800 Rh6BG197700 Rh6CG197800 Rh6DG189400 Rh7AG114900 Rh7AG115000 Rh7AG115200 Rh7AG115300 Rh7AG115400 Rh7AG115500 Rh7AG123900 Rh7AG124100 Rh7AG124300 Rh7BG117200 Rh7BG117400 Rh7BG118400 Rh7BG125400 Rh7BG125600 Rh7BG125700 Rh7BG125800 Rh7BG125900 Rh7BG126000 Rh7BG126400 Rh7BG126600 Rh7BG126700 Rh7BG166200 Rh7DG118600 Rh7DG118700 Rh7DG118900 Rh7DG119000 Rh7DG119100 Rh7DG127400 Rh7DG127600 Rh7DG127700 Rh7DG127900 Rh7DG128200
rosa_wichuraiana Rw1G013270 Rw1G020790 Rw2G027890 Rw2G028040 Rw3G019240 Rw4G014070 Rw4G020540 Rw5G021320 Rw5G022970 Rw6G016920 Rw7G010020 Rw7G010040 Rw7G010580 Rw7G010590 Rw7G010600 Rw7G010610 Rw7G010620 Rw7G010630 Rw7G010640 Rw7G010690

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 233, 449
AciI CCGC 4 cut(s) 18, 30, 447, 584
AfaI GTAC 2 cut(s) 64, 110
AfiI CCNNNNNNNGG 1 cut(s) 156
AgsI TTSAA 2 cut(s) 274, 580
AjuI GAANNNNNNNTTGG 2 cut(s) 357, 389
AluBI AGCT 4 cut(s) 35, 146, 407, 454
AluI AGCT 4 cut(s) 35, 146, 407, 454
Alw21I GWGCWC 1 cut(s) 37
Alw26I GTCTC 1 cut(s) 590
Ama87I CYCGRG 1 cut(s) 184
AsuHPI GGTGA 2 cut(s) 159, 598
AvaI CYCGRG 1 cut(s) 184
BanII GRGCYC 2 cut(s) 37, 194
BbsI GAAGAC 2 cut(s) 68, 552
Bbv12I GWGCWC 1 cut(s) 37
BceAI ACGGC 1 cut(s) 57
BciVI GTATCC 1 cut(s) 433
BclI TGATCA 2 cut(s) 501, 588
BcoDI GTCTC 1 cut(s) 590
BfaI CTAG 4 cut(s) 174, 195, 458, 636
BfuI GTATCC 1 cut(s) 433
BmcAI AGTACT 1 cut(s) 110
BmeT110I CYCGRG 1 cut(s) 184
BpiI GAAGAC 2 cut(s) 68, 552
BpmI CTGGAG 1 cut(s) 561
BpuEI CTTGAG 1 cut(s) 371
BsaXI ACNNNNNCTCC 2 cut(s) 130, 160
Bsc4I CCNNNNNNNGG 1 cut(s) 156
Bse1I ACTGG 3 cut(s) 106, 310, 544
BseGI GGATG 2 cut(s) 304, 610
BseLI CCNNNNNNNGG 1 cut(s) 156
BseMII CTCAG 1 cut(s) 465
BseNI ACTGG 3 cut(s) 106, 310, 544
BseYI CCCAGC 1 cut(s) 431
Bsh1236I CGCG 2 cut(s) 233, 449
BsiHKAI GWGCWC 1 cut(s) 37
BsiHKCI CYCGRG 1 cut(s) 184
BslFI GGGAC 1 cut(s) 448
BslI CCNNNNNNNGG 1 cut(s) 156
BsmAI GTCTC 1 cut(s) 590
BsmFI GGGAC 1 cut(s) 448
BsoBI CYCGRG 1 cut(s) 184
Bsp1286I GDGCHC 2 cut(s) 37, 194
Bsp143I GATC 2 cut(s) 501, 588
BspACI CCGC 4 cut(s) 18, 30, 447, 584
BspCNI CTCAG 1 cut(s) 466
BspFNI CGCG 2 cut(s) 233, 449
BspHI TCATGA 1 cut(s) 498
BspQI GCTCTTC 1 cut(s) 185
BsrI ACTGG 3 cut(s) 106, 310, 544
BssMI GATC 2 cut(s) 501, 588
Bst4CI ACNGT 2 cut(s) 215, 258
Bst6I CTCTTC 2 cut(s) 185, 606
BstDEI CTNAG 1 cut(s) 474
BstF5I GGATG 2 cut(s) 304, 610
BstFNI CGCG 2 cut(s) 233, 449
BstKTI GATC 2 cut(s) 504, 591
BstMAI GTCTC 1 cut(s) 590
BstMBI GATC 2 cut(s) 501, 588
BstUI CGCG 2 cut(s) 233, 449
BstV2I GAAGAC 2 cut(s) 68, 552
BsuI GTATCC 1 cut(s) 433
BtsCI GGATG 2 cut(s) 304, 610
BtsI GCAGTG 1 cut(s) 623
BtsIMutI CAGTG 2 cut(s) 226, 623
CciI TCATGA 1 cut(s) 498
CseI GACGC 1 cut(s) 239
Csp6I GTAC 2 cut(s) 63, 109
CviAII CATG 1 cut(s) 499
CviJI RGCY 8 cut(s) 35, 146, 178, 192, 251, 407, 454, 473
CviKI_1 RGCY 8 cut(s) 35, 146, 178, 192, 251, 407, 454, 473
CviQI GTAC 2 cut(s) 63, 109
DdeI CTNAG 1 cut(s) 474
DpnI GATC 2 cut(s) 503, 590
DpnII GATC 2 cut(s) 501, 588
DraI TTTAAA 1 cut(s) 483
Eam1104I CTCTTC 2 cut(s) 185, 606
EarI CTCTTC 2 cut(s) 185, 606
EciI GGCGGA 1 cut(s) 45
Ecl136II GAGCTC 1 cut(s) 35
Eco24I GRGCYC 2 cut(s) 37, 194
Eco53kI GAGCTC 1 cut(s) 35
Eco88I CYCGRG 1 cut(s) 184
EcoICRI GAGCTC 1 cut(s) 35
EcoT38I GRGCYC 2 cut(s) 37, 194
FaeI CATG 1 cut(s) 502
FaiI YATR 8 cut(s) 92, 294, 296, 401, 422, 500, 551, 569
FaqI GGGAC 1 cut(s) 448
FatI CATG 1 cut(s) 498
FauI CCCGC 1 cut(s) 25
FauNDI CATATG 1 cut(s) 294
FbaI TGATCA 2 cut(s) 501, 588
FokI GGATG 2 cut(s) 311, 597
FriOI GRGCYC 2 cut(s) 37, 194
FspBI CTAG 4 cut(s) 174, 195, 458, 636
GsaI CCCAGC 1 cut(s) 435
GsuI CTGGAG 1 cut(s) 561
HgaI GACGC 1 cut(s) 239
Hin1II CATG 1 cut(s) 502
HincII GTYRAC 1 cut(s) 532
HindII GTYRAC 1 cut(s) 532
HindIII AAGCTT 1 cut(s) 452
HinfI GANTC 3 cut(s) 123, 355, 598
HpaI GTTAAC 1 cut(s) 532
HphI GGTGA 2 cut(s) 159, 598
Hpy166II GTNNAC 2 cut(s) 340, 532
Hpy188I TCNGA 1 cut(s) 159
Hpy188III TCNNGA 3 cut(s) 184, 458, 499
Hpy8I GTNNAC 2 cut(s) 340, 532
HpyAV CCTTC 4 cut(s) 142, 174, 487, 574
HpyCH4III ACNGT 2 cut(s) 215, 258
HpyCH4IV ACGT 1 cut(s) 342
HpyCH4V TGCA 3 cut(s) 511, 571, 657
HpyF3I CTNAG 1 cut(s) 474
HpySE526I ACGT 1 cut(s) 342
Hsp92II CATG 1 cut(s) 502
Ksp22I TGATCA 2 cut(s) 501, 588
KspAI GTTAAC 1 cut(s) 532
Kzo9I GATC 2 cut(s) 501, 588
LguI GCTCTTC 1 cut(s) 185
LmnI GCTCC 2 cut(s) 32, 151
LpnPI CCDG 5 cut(s) 119, 291, 347, 417, 525
MaeI CTAG 4 cut(s) 174, 195, 458, 636
MaeII ACGT 1 cut(s) 342
MaeIII GTNAC 2 cut(s) 308, 394
MalI GATC 2 cut(s) 503, 590
MboI GATC 2 cut(s) 501, 588
MboII GAAGA 4 cut(s) 68, 172, 557, 593
MfeI CAATTG 1 cut(s) 95
MhlI GDGCHC 2 cut(s) 37, 194
MluCI AATT 4 cut(s) 95, 236, 506, 561
MlyI GAGTC 2 cut(s) 117, 592
MnlI CCTC 4 cut(s) 180, 193, 310, 624
MseI TTAA 3 cut(s) 482, 531, 554
MslI CAYNNNNRTG 1 cut(s) 297
MunI CAATTG 1 cut(s) 95
MvnI CGCG 2 cut(s) 233, 449
NdeI CATATG 1 cut(s) 294
NdeII GATC 2 cut(s) 501, 588
NlaIII CATG 1 cut(s) 502
NmuCI GTSAC 1 cut(s) 308
PaeR7I CTCGAG 1 cut(s) 184
PagI TCATGA 1 cut(s) 498
PciSI GCTCTTC 1 cut(s) 185
PfeI GAWTC 1 cut(s) 355
PleI GAGTC 2 cut(s) 117, 592
PpsI GAGTC 2 cut(s) 117, 592
Psp124BI GAGCTC 1 cut(s) 37
PspFI CCCAGC 1 cut(s) 431
RsaI GTAC 2 cut(s) 64, 110
RsaNI GTAC 2 cut(s) 63, 109
RseI CAYNNNNRTG 1 cut(s) 297
SacI GAGCTC 1 cut(s) 37
SapI GCTCTTC 1 cut(s) 185
SaqAI TTAA 3 cut(s) 482, 531, 554
Sau3AI GATC 2 cut(s) 501, 588
ScaI AGTACT 1 cut(s) 110
SchI GAGTC 2 cut(s) 117, 592
SduI GDGCHC 2 cut(s) 37, 194
Sfr274I CTCGAG 1 cut(s) 184
SlaI CTCGAG 1 cut(s) 184
SmiMI CAYNNNNRTG 1 cut(s) 297
SmlI CTYRAG 2 cut(s) 184, 350
SmoI CTYRAG 2 cut(s) 184, 350
Sse9I AATT 4 cut(s) 95, 236, 506, 561
SsiI CCGC 4 cut(s) 18, 30, 447, 584
SspMI CTAG 4 cut(s) 174, 195, 458, 636
SstI GAGCTC 1 cut(s) 37
TaaI ACNGT 2 cut(s) 215, 258
TaiI ACGT 1 cut(s) 345
TaqI TCGA 1 cut(s) 185
TasI AATT 4 cut(s) 95, 236, 506, 561
TatI WGTACW 2 cut(s) 62, 108
TfiI GAWTC 1 cut(s) 355
Tru1I TTAA 3 cut(s) 482, 531, 554
Tru9I TTAA 3 cut(s) 482, 531, 554
TscAI CASTG 2 cut(s) 226, 630
TseFI GTSAC 1 cut(s) 308
Tsp45I GTSAC 1 cut(s) 308
TspDTI ATGAA 2 cut(s) 339, 531
TspGWI ACGGA 1 cut(s) 452
TspRI CASTG 2 cut(s) 226, 630
XbaI TCTAGA 1 cut(s) 457
XhoI CTCGAG 1 cut(s) 184
XspI CTAG 4 cut(s) 174, 195, 458, 636
ZrmI AGTACT 1 cut(s) 110
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.