RLG00000028350

Cytochrome p450

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
Physical Location & Seq
Reverse (-)
21631041 .. 21635931
4891 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000028350

Sequence Viewer

Length: 756 bp
ATGTACAATTACAAGGACATATTGACGGCACCTTATGGTGACTATTGGAGGCAGGTGAGGAGTTTATGCGTCTTAAATTTGTTGAGCAACAAAAGGGTTCGTTCTTTTCGTGCTGTGAGACAAGAGGAAACGAAACTCATGATGAGCAATATTGAACAGTCTTGTAGTAAAACATTCTCCTCCTCGTCACCATCATCGGTTTTGAATTTAAGCGAAATGTTTATGAAGCTTACTAATGATGTCATTTGTAGAGTTGCTATGGGTAGGAAGTACAGCGATTGGGAGGAAGGTCGTGGGAGGATGTTTATGGAACTTTCTGCAGAGCTGTCAGAGTTGTTCACAAGGGTTAATATTGGTGACTATATCCCATGGCTAGCTTGGTTCACCCGTGTGAATGGTTTAGATGCAAAGCTAGATGATATGGCTAAGCGGATGAATGCCTTCATTGATATGGTTATTCAAGAGCATATGGATAAATCAAACAATGGAAATGATGATGATGATAATGAGGACAAAAAGGATTTGGTGGATGTTTTGCTTTCAGTTCAGAAAGAAAATGCACTTTGTTATCCTATTGATCGAGTTAGCGTAAAAGCTATCATCCTGATGGTTTGGTTTGGTTGCACAAAAATTGAAGGCAGTGCAGCTCCAATTGAGGACGATCGAGCCCTTTCGATTGAGATGACACGGGATTTCGAAGAAGGGGGATGGAGGGAGGAGAGGGGTTGCTCCGGCGCGTTTGTGGAGTGCTTGTAG

Protein Analysis

252

Amino Acids

28.88

Weight (kDa)

4.89

Isoelectric Point (pI)

51.87

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 4 - 186 4.4e-17 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000061)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G48270 AT3G48280 AT3G48290 AT3G48290 AT3G48300 AT3G48300 AT3G48310 AT3G48320 AT4G20235 AT4G20235
fragaria_vesca FvH4_2g12910 FvH4_2g12910 FvH4_2g12910 FvH4_2g12910 FvH4_2g12910 FvH4_2g36190 FvH4_3g14160 FvH4_3g14210 FvH4_3g14260 FvH4_3g14260 FvH4_3g21100 FvH4_3g21380 FvH4_4g24460 FvH4_4g24500 FvH4_5g06571 FvH4_5g06571 FvH4_5g06571 FvH4_5g06571 FvH4_5g06572 FvH4_5g06573 FvH4_5g06574 FvH4_5g06575 FvH4_5g06576 FvH4_5g06577 FvH4_5g06577 FvH4_5g07540 FvH4_5g07550 FvH4_5g07560 FvH4_5g07570 FvH4_5g29491 FvH4_5g29492 FvH4_6g23870 FvH4_6g23880 FvH4_6g26870 FvH4_7g11861 FvH4_7g11862 FvH4_7g13050 FvH4_7g13060 FvH4_7g13080 FvH4_7g13080 FvH4_7g22630 FvH4_7g22650 FvH4_7g22651 FvH4_7g23020
malus_domestica MD03G1207400.v1.1 MD03G1214800.v1.1 MD03G1218500.v1.1 MD06G1163100.v1.1 MD06G1163300.v1.1 MD06G1163400.v1.1 MD06G1163500.v1.1 MD06G1163600.v1.1 MD06G1163800.v1.1 MD06G1164000.v1.1 MD06G1164100.v1.1 MD06G1224400.v1.1 MD08G1222800.v1.1 MD08G1222900.v1.1 MD08G1223100.v1.1 MD11G1091500.v1.1 MD11G1091800.v1.1 MD14G1163200.v1.1 MD14G1169000.v1.1 MD15G1207200.v1.1 MD15G1207300.v1.1 MD17G1259400.v1.1
prunus_persica Prupe.4G198100_v2.0.a1 Prupe.4G199100_v2.0.a1 Prupe.4G199400_v2.0.a1 Prupe.4G199800_v2.0.a1 Prupe.4G225200_v2.0.a1 Prupe.4G239100_v2.0.a1 Prupe.5G156600_v2.0.a1 Prupe.5G163500_v2.0.a1 Prupe.7G209500_v2.0.a1 Prupe.I003400_v2.0.a1
pyrus_communis pycom03g16340 pycom06g14600 pycom06g14610 pycom06g14620 pycom06g14630 pycom06g14640 pycom06g14670 pycom06g14690 pycom08g19390 pycom08g19400 pycom08g19410 pycom11g07600 pycom11g07610 pycom11g07620 pycom11g07660 pycom14g13580 pycom14g14080 pycom14g14100 pycom14g14110 pycom15g18380 pycom17g26080
rosa_chinensis RchiOBHm_Chr1g0339441 RchiOBHm_Chr1g0339451 RchiOBHm_Chr1g0352191 RchiOBHm_Chr1g0368221 RchiOBHm_Chr2g0129531 RchiOBHm_Chr2g0129541 RchiOBHm_Chr3g0477631 RchiOBHm_Chr3g0482551 RchiOBHm_Chr3g0482561 RchiOBHm_Chr3g0482571 RchiOBHm_Chr4g0411601 RchiOBHm_Chr4g0422181 RchiOBHm_Chr5g0036661 RchiOBHm_Chr5g0036731 RchiOBHm_Chr6g0274021 RchiOBHm_Chr7g0190921 RchiOBHm_Chr7g0190931 RchiOBHm_Chr7g0190941 RchiOBHm_Chr7g0190951 RchiOBHm_Chr7g0190961 RchiOBHm_Chr7g0190971 RchiOBHm_Chr7g0191001 RchiOBHm_Chr7g0191011 RchiOBHm_Chr7g0191021 RchiOBHm_Chr7g0192181 RchiOBHm_Chr7g0192191 RchiOBHm_Chr7g0192201 RchiOBHm_Chr7g0192221 RchiOBHm_Chr7g0192231 RchiOBHm_Chr7g0192281 RchiOBHm_Chr7g0197311
rosa_laevigata RLG00000003942 RLG00000004345 RLG00000004379 RLG00000004383 RLG00000004384 RLG00000004385 RLG00000004387 RLG00000004388 RLG00000004389 RLG00000004480 RLG00000004481 RLG00000004482 RLG00000004483 RLG00000004485 RLG00000008342 RLG00000008401 RLG00000013583 RLG00000017044 RLG00000027229 RLG00000028349 RLG00000028350 RLG00000028353 RLG00000028820 RLG00000033707 RLG00000033710
rosa_multiflora Rmu_co8020340.1_g000001 Rmu_co8096640.1_g000001 Rmu_co8214930.1_g000001 Rmu_co8223272.1_g000001 Rmu_co8282535.1_g000001 Rmu_co8343567.1_g000001 Rmu_co8404191.1_g000001 Rmu_co8455157.1_g000001 Rmu_sc0000062.1_g000028 Rmu_sc0000082.1_g000091 Rmu_sc0000509.1_g000017 Rmu_sc0000775.1_g000001 Rmu_sc0000999.1_g000034 Rmu_sc0001559.1_g000004 Rmu_sc0001559.1_g000009 Rmu_sc0002164.1_g000001 Rmu_sc0002164.1_g000005 Rmu_sc0002164.1_g000007 Rmu_sc0002164.1_g000008 Rmu_sc0002164.1_g000009 Rmu_sc0002164.1_g000019 Rmu_sc0002247.1_g000009 Rmu_sc0002373.1_g000002 Rmu_sc0002373.1_g000003 Rmu_sc0002944.1_g000059 Rmu_sc0003930.1_g000004 Rmu_sc0004958.1_g000001 Rmu_sc0005197.1_g000014 Rmu_sc0005898.1_g000008 Rmu_sc0005898.1_g000009 Rmu_sc0005898.1_g000015 Rmu_sc0006059.1_g000004 Rmu_sc0006059.1_g000010 Rmu_sc0006903.1_g000007 Rmu_sc0006903.1_g000008 Rmu_sc0006968.1_g000001 Rmu_sc0011009.1_g000009 Rmu_sc0022852.1_g000002 Rmu_sc0033854.1_g000001 Rmu_ssc0000421.1_g000057 Rmu_ssc0000421.1_g000067 Rmu_ssc0000421.1_g000069 Rmu_ssc0000421.1_g000072 Rmu_ssc0000421.1_g000081 Rmu_ssc0000421.1_g000086
rosa_roxburghii Rroxscaffold_158G00443680 Rroxscaffold_158G00443710 Rroxscaffold_158G00443720 Rroxscaffold_158G00443740 Rroxscaffold_1G00034950 Rroxscaffold_1G00044240 Rroxscaffold_1G00044270 Rroxscaffold_3G00241380 Rroxscaffold_3G00247000 Rroxscaffold_3G00263120 Rroxscaffold_3G00263150 Rroxscaffold_3G00263160 Rroxscaffold_3G00263170 Rroxscaffold_3G00263180 Rroxscaffold_3G00263190 Rroxscaffold_3G00263210 Rroxscaffold_3G00263230 Rroxscaffold_3G00263260 Rroxscaffold_3G00264110 Rroxscaffold_3G00264130 Rroxscaffold_3G00264160 Rroxscaffold_3G00264180 Rroxscaffold_3G00264200 Rroxscaffold_4G00288750 Rroxscaffold_4G00303110 Rroxscaffold_4G00303120 Rroxscaffold_4G00322280 Rroxscaffold_5G00356200 Rroxscaffold_6G00399150 Rroxscaffold_6G00399290 Rroxscaffold_7G00194770
rosa_rugosa Rorug01G0225300 Rorug01G0225400 Rorug01G0225800 Rorug01G0226000 Rorug01G0339400 Rorug01G0451500 Rorug03G0196900 Rorug03G0294900 Rorug04G0107500 Rorug04G0107600 Rorug04G0129700 Rorug04G0178000 Rorug05G0144900.1 Rorug05G0145000 Rorug05G0228000 Rorug05G0228600 Rorug06G0078300 Rorug06G0508000 Rorug06G0508100 Rorug06G0508100 Rorug06G0508400 Rorug06G0513400 Rorug07G0000100 Rorug07G0000200 Rorug07G0000300 Rorug07G0000500 Rorug07G0000800
rosa_samantha Rh1BG060400 Rh1BG210300 Rh1BG210700 Rh1BG210800 Rh1BG309800 Rh1CG223800 Rh1CG224200 Rh1CG325200 Rh1DG237000 Rh1DG237400 Rh1DG341600 Rh2DG365700 Rh3AG212500 Rh3AG248400 Rh3CG239800 Rh3DG239300 Rh4AG169300 Rh4BG166200 Rh4BG240500 Rh4BG240600 Rh4DG163600 Rh5AG249600 Rh5AG249900 Rh5AG250000 Rh5CG283100 Rh5CG283200 Rh5CG283400 Rh5DG259200 Rh5DG259800 Rh6BG197700 Rh6CG197800 Rh6DG189400 Rh7AG114900 Rh7AG115000 Rh7AG115200 Rh7AG115300 Rh7AG115400 Rh7AG115500 Rh7AG123900 Rh7AG124100 Rh7AG124300 Rh7BG117200 Rh7BG117400 Rh7BG118400 Rh7BG125400 Rh7BG125600 Rh7BG125700 Rh7BG125800 Rh7BG125900 Rh7BG126000 Rh7BG126400 Rh7BG126600 Rh7BG126700 Rh7BG166200 Rh7DG118600 Rh7DG118700 Rh7DG118900 Rh7DG119000 Rh7DG119100 Rh7DG127400 Rh7DG127600 Rh7DG127700 Rh7DG127900 Rh7DG128200
rosa_wichuraiana Rw1G013270 Rw1G020790 Rw2G027890 Rw2G028040 Rw3G019240 Rw4G014070 Rw4G020540 Rw5G021320 Rw5G022970 Rw6G016920 Rw7G010020 Rw7G010040 Rw7G010580 Rw7G010590 Rw7G010600 Rw7G010610 Rw7G010620 Rw7G010630 Rw7G010640 Rw7G010690

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 43
Acc36I ACCTGC 1 cut(s) 43
AccB1I GGYRCC 1 cut(s) 28
AccII CGCG 1 cut(s) 737
AciI CCGC 1 cut(s) 430
AcsI RAATTY 2 cut(s) 76, 205
AfaI GTAC 2 cut(s) 5, 272
AgsI TTSAA 4 cut(s) 155, 205, 461, 635
AleI CACNNNNGTG 1 cut(s) 389
AluBI AGCT 6 cut(s) 229, 325, 377, 412, 596, 647
AluI AGCT 6 cut(s) 229, 325, 377, 412, 596, 647
Alw26I GTCTC 1 cut(s) 112
ApeKI GCWGC 1 cut(s) 644
ApoI RAATTY 2 cut(s) 76, 205
Asp700I GAANNNNTTC 1 cut(s) 440
AspLEI GCGC 1 cut(s) 737
AsuHPI GGTGA 5 cut(s) 50, 67, 180, 368, 376
AsuII TTCGAA 1 cut(s) 696
AsuNHI GCTAGC 1 cut(s) 373
BanI GGYRCC 1 cut(s) 28
BanII GRGCYC 1 cut(s) 670
BbvI GCAGC 1 cut(s) 656
BccI CCATC 3 cut(s) 199, 601, 702
BceAI ACGGC 1 cut(s) 42
BcoDI GTCTC 1 cut(s) 112
BfaI CTAG 2 cut(s) 374, 413
BfmI CTRYAG 1 cut(s) 318
BfuAI ACCTGC 1 cut(s) 43
BisI GCNGC 1 cut(s) 645
BlpI GCTNAGC 1 cut(s) 426
BlsI GCNGC 1 cut(s) 646
BmiI GGNNCC 1 cut(s) 30
BmsI GCATC 1 cut(s) 394
BmtI GCTAGC 1 cut(s) 377
Bpu1102I GCTNAGC 1 cut(s) 426
Bpu14I TTCGAA 1 cut(s) 696
BsaJI CCNNGG 1 cut(s) 368
BsaXI ACNNNNNCTCC 1 cut(s) 737
BseDI CCNNGG 1 cut(s) 368
BseGI GGATG 5 cut(s) 306, 438, 535, 600, 713
BseRI GAGGAG 4 cut(s) 73, 169, 172, 731
BseXI GCAGC 1 cut(s) 656
BsgI GTGCAG 1 cut(s) 663
Bsh1236I CGCG 1 cut(s) 737
Bsh1285I CGRYCG 1 cut(s) 664
BshNI GGYRCC 1 cut(s) 28
BsiEI CGRYCG 1 cut(s) 664
BsiSI CCGG 1 cut(s) 732
BsmAI GTCTC 1 cut(s) 112
BsmI GAATGC 1 cut(s) 442
Bsp119I TTCGAA 1 cut(s) 696
Bsp1286I GDGCHC 1 cut(s) 670
Bsp1407I TGTACA 1 cut(s) 3
Bsp143I GATC 2 cut(s) 577, 661
Bsp1720I GCTNAGC 1 cut(s) 426
Bsp19I CCATGG 1 cut(s) 368
BspACI CCGC 1 cut(s) 430
BspFNI CGCG 1 cut(s) 737
BspHI TCATGA 1 cut(s) 138
BspLI GGNNCC 1 cut(s) 30
BspMAI CTGCAG 1 cut(s) 322
BspMI ACCTGC 1 cut(s) 43
BspOI GCTAGC 1 cut(s) 377
BspT104I TTCGAA 1 cut(s) 696
BspT107I GGYRCC 1 cut(s) 28
BsrGI TGTACA 1 cut(s) 3
BssECI CCNNGG 1 cut(s) 368
BssMI GATC 2 cut(s) 577, 661
BssT1I CCWWGG 1 cut(s) 368
Bst4CI ACNGT 1 cut(s) 159
BstAUI TGTACA 1 cut(s) 3
BstBI TTCGAA 1 cut(s) 696
BstC8I GCNNGC 1 cut(s) 375
BstDEI CTNAG 1 cut(s) 426
BstDSI CCRYGG 1 cut(s) 368
BstF5I GGATG 5 cut(s) 306, 438, 535, 600, 713
BstFNI CGCG 1 cut(s) 737
BstHHI GCGC 1 cut(s) 737
BstKTI GATC 2 cut(s) 580, 664
BstMAI GTCTC 1 cut(s) 112
BstMBI GATC 2 cut(s) 577, 661
BstMCI CGRYCG 1 cut(s) 664
BstSFI CTRYAG 1 cut(s) 318
BstUI CGCG 1 cut(s) 737
BstV1I GCAGC 1 cut(s) 656
BtgI CCRYGG 1 cut(s) 368
BtsCI GGATG 5 cut(s) 306, 438, 535, 600, 713
BtsI GCAGTG 1 cut(s) 646
BtsIMutI CAGTG 1 cut(s) 646
BveI ACCTGC 1 cut(s) 43
Cac8I GCNNGC 1 cut(s) 375
CciI TCATGA 1 cut(s) 138
CfoI GCGC 1 cut(s) 737
CseI GACGC 1 cut(s) 58
Csp6I GTAC 2 cut(s) 4, 271
CviAII CATG 2 cut(s) 139, 369
CviJI RGCY 9 cut(s) 229, 325, 373, 377, 412, 425, 596, 647, 668
CviKI_1 RGCY 9 cut(s) 229, 325, 373, 377, 412, 425, 596, 647, 668
CviQI GTAC 2 cut(s) 4, 271
DdeI CTNAG 1 cut(s) 426
DpnI GATC 2 cut(s) 579, 663
DpnII GATC 2 cut(s) 577, 661
Eco130I CCWWGG 1 cut(s) 368
Eco24I GRGCYC 1 cut(s) 670
EcoT14I CCWWGG 1 cut(s) 368
EcoT38I GRGCYC 1 cut(s) 670
ErhI CCWWGG 1 cut(s) 368
FaeI CATG 2 cut(s) 142, 372
FatI CATG 2 cut(s) 138, 368
FauNDI CATATG 1 cut(s) 468
Fnu4HI GCNGC 1 cut(s) 645
FokI GGATG 5 cut(s) 313, 445, 542, 587, 720
FriOI GRGCYC 1 cut(s) 670
Fsp4HI GCNGC 1 cut(s) 645
FspBI CTAG 2 cut(s) 374, 413
GlaI GCGC 1 cut(s) 736
GluI GCNGC 1 cut(s) 645
HapII CCGG 1 cut(s) 732
HgaI GACGC 1 cut(s) 58
HhaI GCGC 1 cut(s) 737
Hin1II CATG 2 cut(s) 142, 372
Hin6I GCGC 1 cut(s) 735
HinP1I GCGC 1 cut(s) 735
HindIII AAGCTT 1 cut(s) 227
HpaII CCGG 1 cut(s) 732
HphI GGTGA 5 cut(s) 50, 67, 180, 368, 376
Hpy166II GTNNAC 2 cut(s) 339, 384
Hpy188I TCNGA 2 cut(s) 331, 549
Hpy188III TCNNGA 3 cut(s) 139, 461, 604
Hpy8I GTNNAC 2 cut(s) 339, 384
HpyAV CCTTC 4 cut(s) 281, 451, 629, 695
HpyCH4III ACNGT 1 cut(s) 159
HpyCH4V TGCA 5 cut(s) 320, 407, 560, 624, 644
HpyF3I CTNAG 1 cut(s) 426
Hsp92II CATG 2 cut(s) 142, 372
HspAI GCGC 1 cut(s) 735
Kzo9I GATC 2 cut(s) 577, 661
LmnI GCTCC 2 cut(s) 652, 734
LpnPI CCDG 3 cut(s) 38, 617, 745
Lsp1109I GCAGC 1 cut(s) 656
LweI GCATC 1 cut(s) 394
MaeI CTAG 2 cut(s) 374, 413
MaeIII GTNAC 3 cut(s) 38, 186, 356
MalI GATC 2 cut(s) 579, 663
MboI GATC 2 cut(s) 577, 661
MboII GAAGA 1 cut(s) 710
MfeI CAATTG 1 cut(s) 651
MhlI GDGCHC 1 cut(s) 670
MluCI AATT 5 cut(s) 7, 76, 205, 630, 651
MroXI GAANNNNTTC 1 cut(s) 440
MseI TTAA 3 cut(s) 74, 209, 348
MslI CAYNNNNRTG 3 cut(s) 389, 449, 605
MspI CCGG 1 cut(s) 732
MunI CAATTG 1 cut(s) 651
Mva1269I GAATGC 1 cut(s) 442
MvnI CGCG 1 cut(s) 737
NcoI CCATGG 1 cut(s) 368
NdeI CATATG 1 cut(s) 468
NdeII GATC 2 cut(s) 577, 661
NheI GCTAGC 1 cut(s) 373
NlaIII CATG 2 cut(s) 142, 372
NlaIV GGNNCC 1 cut(s) 30
NmuCI GTSAC 3 cut(s) 38, 186, 356
NspV TTCGAA 1 cut(s) 696
OliI CACNNNNGTG 1 cut(s) 389
PagI TCATGA 1 cut(s) 138
PaqCI CACCTGC 1 cut(s) 43
PcsI WCGNNNNNNNCGW 1 cut(s) 106
PctI GAATGC 1 cut(s) 442
PdmI GAANNNNTTC 1 cut(s) 440
PkrI GCNGC 1 cut(s) 646
Ple19I CGATCG 1 cut(s) 664
PspN4I GGNNCC 1 cut(s) 30
PstI CTGCAG 1 cut(s) 322
PvuI CGATCG 1 cut(s) 664
RsaI GTAC 2 cut(s) 5, 272
RsaNI GTAC 2 cut(s) 4, 271
RseI CAYNNNNRTG 3 cut(s) 389, 449, 605
SaqAI TTAA 3 cut(s) 74, 209, 348
SatI GCNGC 1 cut(s) 645
Sau3AI GATC 2 cut(s) 577, 661
SduI GDGCHC 1 cut(s) 670
SetI ASST 9 cut(s) 34, 57, 231, 292, 327, 379, 414, 598, 649
SfaNI GCATC 1 cut(s) 394
SfcI CTRYAG 1 cut(s) 318
SfuI TTCGAA 1 cut(s) 696
SmiMI CAYNNNNRTG 3 cut(s) 389, 449, 605
Sse9I AATT 5 cut(s) 7, 76, 205, 630, 651
SsiI CCGC 1 cut(s) 430
SspI AATATT 2 cut(s) 151, 352
SspMI CTAG 2 cut(s) 374, 413
StyI CCWWGG 1 cut(s) 368
TaaI ACNGT 1 cut(s) 159
TaqI TCGA 4 cut(s) 580, 664, 674, 696
TasI AATT 5 cut(s) 7, 76, 205, 630, 651
TatI WGTACW 2 cut(s) 3, 270
Tru1I TTAA 3 cut(s) 74, 209, 348
Tru9I TTAA 3 cut(s) 74, 209, 348
TscAI CASTG 1 cut(s) 646
TseFI GTSAC 3 cut(s) 38, 186, 356
TseI GCWGC 1 cut(s) 644
Tsp45I GTSAC 3 cut(s) 38, 186, 356
TspDTI ATGAA 3 cut(s) 239, 433, 449
TspRI CASTG 1 cut(s) 646
XapI RAATTY 2 cut(s) 76, 205
XcmI CCANNNNNNNNNTGG 1 cut(s) 375
XmnI GAANNNNTTC 1 cut(s) 440
XspI CTAG 2 cut(s) 374, 413
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.