RchiOBHm_Chr3g0482561

Cytochrome p450

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
Physical Location & Seq
Reverse (-)
28580743 .. 28581078
336 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ44741

Sequence Viewer

Length: 336 bp
ATGTCAGAGCTCGACTCAGAGCTTCTAAAACATTCAAAAGTCATGAAGAAGTTGCAGAATGAGGTGAGGGAAATAGTCGGAAATAAAGCCGAGGTAACAGAAGATGATCTGGTGGGTATGCACTACTTGAGAGCAGTAATCAAGGAGACTCTTCGTTTACATCCACCGGTTCCGCTGTTACTGCCCAGGATGGCGACCCAAGATGTGAATGTAAATGGTTACAGCATTAAGGCCAACACTCAAGTTCTGGTGAGTGCATGGCAAATTGGAAGAGATCCCAAGTCGTACAATAAACCAGAGGAGTATGAGCCAGAGAAGTTCTTGCTGAATATATAG

Protein Analysis

111

Amino Acids

12.74

Weight (kDa)

6.29

Isoelectric Point (pI)

50.75

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 7 - 108 6.5e-39 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0000061)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G48270 AT3G48280 AT3G48290 AT3G48290 AT3G48300 AT3G48300 AT3G48310 AT3G48320 AT4G20235 AT4G20235
fragaria_vesca FvH4_2g12910 FvH4_2g12910 FvH4_2g12910 FvH4_2g12910 FvH4_2g12910 FvH4_2g36190 FvH4_3g14160 FvH4_3g14210 FvH4_3g14260 FvH4_3g14260 FvH4_3g21100 FvH4_3g21380 FvH4_4g24460 FvH4_4g24500 FvH4_5g06571 FvH4_5g06571 FvH4_5g06571 FvH4_5g06571 FvH4_5g06572 FvH4_5g06573 FvH4_5g06574 FvH4_5g06575 FvH4_5g06576 FvH4_5g06577 FvH4_5g06577 FvH4_5g07540 FvH4_5g07550 FvH4_5g07560 FvH4_5g07570 FvH4_5g29491 FvH4_5g29492 FvH4_6g23870 FvH4_6g23880 FvH4_6g26870 FvH4_7g11861 FvH4_7g11862 FvH4_7g13050 FvH4_7g13060 FvH4_7g13080 FvH4_7g13080 FvH4_7g22630 FvH4_7g22650 FvH4_7g22651 FvH4_7g23020
malus_domestica MD03G1207400.v1.1 MD03G1214800.v1.1 MD03G1218500.v1.1 MD06G1163100.v1.1 MD06G1163300.v1.1 MD06G1163400.v1.1 MD06G1163500.v1.1 MD06G1163600.v1.1 MD06G1163800.v1.1 MD06G1164000.v1.1 MD06G1164100.v1.1 MD06G1224400.v1.1 MD08G1222800.v1.1 MD08G1222900.v1.1 MD08G1223100.v1.1 MD11G1091500.v1.1 MD11G1091800.v1.1 MD14G1163200.v1.1 MD14G1169000.v1.1 MD15G1207200.v1.1 MD15G1207300.v1.1 MD17G1259400.v1.1
prunus_persica Prupe.4G198100_v2.0.a1 Prupe.4G199100_v2.0.a1 Prupe.4G199400_v2.0.a1 Prupe.4G199800_v2.0.a1 Prupe.4G225200_v2.0.a1 Prupe.4G239100_v2.0.a1 Prupe.5G156600_v2.0.a1 Prupe.5G163500_v2.0.a1 Prupe.7G209500_v2.0.a1 Prupe.I003400_v2.0.a1
pyrus_communis pycom03g16340 pycom06g14600 pycom06g14610 pycom06g14620 pycom06g14630 pycom06g14640 pycom06g14670 pycom06g14690 pycom08g19390 pycom08g19400 pycom08g19410 pycom11g07600 pycom11g07610 pycom11g07620 pycom11g07660 pycom14g13580 pycom14g14080 pycom14g14100 pycom14g14110 pycom15g18380 pycom17g26080
rosa_chinensis RchiOBHm_Chr1g0339441 RchiOBHm_Chr1g0339451 RchiOBHm_Chr1g0352191 RchiOBHm_Chr1g0368221 RchiOBHm_Chr2g0129531 RchiOBHm_Chr2g0129541 RchiOBHm_Chr3g0477631 RchiOBHm_Chr3g0482551 RchiOBHm_Chr3g0482561 RchiOBHm_Chr3g0482571 RchiOBHm_Chr4g0411601 RchiOBHm_Chr4g0422181 RchiOBHm_Chr5g0036661 RchiOBHm_Chr5g0036731 RchiOBHm_Chr6g0274021 RchiOBHm_Chr7g0190921 RchiOBHm_Chr7g0190931 RchiOBHm_Chr7g0190941 RchiOBHm_Chr7g0190951 RchiOBHm_Chr7g0190961 RchiOBHm_Chr7g0190971 RchiOBHm_Chr7g0191001 RchiOBHm_Chr7g0191011 RchiOBHm_Chr7g0191021 RchiOBHm_Chr7g0192181 RchiOBHm_Chr7g0192191 RchiOBHm_Chr7g0192201 RchiOBHm_Chr7g0192221 RchiOBHm_Chr7g0192231 RchiOBHm_Chr7g0192281 RchiOBHm_Chr7g0197311
rosa_laevigata RLG00000003942 RLG00000004345 RLG00000004379 RLG00000004383 RLG00000004384 RLG00000004385 RLG00000004387 RLG00000004388 RLG00000004389 RLG00000004480 RLG00000004481 RLG00000004482 RLG00000004483 RLG00000004485 RLG00000008342 RLG00000008401 RLG00000013583 RLG00000017044 RLG00000027229 RLG00000028349 RLG00000028350 RLG00000028353 RLG00000028820 RLG00000033707 RLG00000033710
rosa_multiflora Rmu_co8020340.1_g000001 Rmu_co8096640.1_g000001 Rmu_co8214930.1_g000001 Rmu_co8223272.1_g000001 Rmu_co8282535.1_g000001 Rmu_co8343567.1_g000001 Rmu_co8404191.1_g000001 Rmu_co8455157.1_g000001 Rmu_sc0000062.1_g000028 Rmu_sc0000082.1_g000091 Rmu_sc0000509.1_g000017 Rmu_sc0000775.1_g000001 Rmu_sc0000999.1_g000034 Rmu_sc0001559.1_g000004 Rmu_sc0001559.1_g000009 Rmu_sc0002164.1_g000001 Rmu_sc0002164.1_g000005 Rmu_sc0002164.1_g000007 Rmu_sc0002164.1_g000008 Rmu_sc0002164.1_g000009 Rmu_sc0002164.1_g000019 Rmu_sc0002247.1_g000009 Rmu_sc0002373.1_g000002 Rmu_sc0002373.1_g000003 Rmu_sc0002944.1_g000059 Rmu_sc0003930.1_g000004 Rmu_sc0004958.1_g000001 Rmu_sc0005197.1_g000014 Rmu_sc0005898.1_g000008 Rmu_sc0005898.1_g000009 Rmu_sc0005898.1_g000015 Rmu_sc0006059.1_g000004 Rmu_sc0006059.1_g000010 Rmu_sc0006903.1_g000007 Rmu_sc0006903.1_g000008 Rmu_sc0006968.1_g000001 Rmu_sc0011009.1_g000009 Rmu_sc0022852.1_g000002 Rmu_sc0033854.1_g000001 Rmu_ssc0000421.1_g000057 Rmu_ssc0000421.1_g000067 Rmu_ssc0000421.1_g000069 Rmu_ssc0000421.1_g000072 Rmu_ssc0000421.1_g000081 Rmu_ssc0000421.1_g000086
rosa_roxburghii Rroxscaffold_158G00443680 Rroxscaffold_158G00443710 Rroxscaffold_158G00443720 Rroxscaffold_158G00443740 Rroxscaffold_1G00034950 Rroxscaffold_1G00044240 Rroxscaffold_1G00044270 Rroxscaffold_3G00241380 Rroxscaffold_3G00247000 Rroxscaffold_3G00263120 Rroxscaffold_3G00263150 Rroxscaffold_3G00263160 Rroxscaffold_3G00263170 Rroxscaffold_3G00263180 Rroxscaffold_3G00263190 Rroxscaffold_3G00263210 Rroxscaffold_3G00263230 Rroxscaffold_3G00263260 Rroxscaffold_3G00264110 Rroxscaffold_3G00264130 Rroxscaffold_3G00264160 Rroxscaffold_3G00264180 Rroxscaffold_3G00264200 Rroxscaffold_4G00288750 Rroxscaffold_4G00303110 Rroxscaffold_4G00303120 Rroxscaffold_4G00322280 Rroxscaffold_5G00356200 Rroxscaffold_6G00399150 Rroxscaffold_6G00399290 Rroxscaffold_7G00194770
rosa_rugosa Rorug01G0225300 Rorug01G0225400 Rorug01G0225800 Rorug01G0226000 Rorug01G0339400 Rorug01G0451500 Rorug03G0196900 Rorug03G0294900 Rorug04G0107500 Rorug04G0107600 Rorug04G0129700 Rorug04G0178000 Rorug05G0144900.1 Rorug05G0145000 Rorug05G0228000 Rorug05G0228600 Rorug06G0078300 Rorug06G0508000 Rorug06G0508100 Rorug06G0508100 Rorug06G0508400 Rorug06G0513400 Rorug07G0000100 Rorug07G0000200 Rorug07G0000300 Rorug07G0000500 Rorug07G0000800
rosa_samantha Rh1BG060400 Rh1BG210300 Rh1BG210700 Rh1BG210800 Rh1BG309800 Rh1CG223800 Rh1CG224200 Rh1CG325200 Rh1DG237000 Rh1DG237400 Rh1DG341600 Rh2DG365700 Rh3AG212500 Rh3AG248400 Rh3CG239800 Rh3DG239300 Rh4AG169300 Rh4BG166200 Rh4BG240500 Rh4BG240600 Rh4DG163600 Rh5AG249600 Rh5AG249900 Rh5AG250000 Rh5CG283100 Rh5CG283200 Rh5CG283400 Rh5DG259200 Rh5DG259800 Rh6BG197700 Rh6CG197800 Rh6DG189400 Rh7AG114900 Rh7AG115000 Rh7AG115200 Rh7AG115300 Rh7AG115400 Rh7AG115500 Rh7AG123900 Rh7AG124100 Rh7AG124300 Rh7BG117200 Rh7BG117400 Rh7BG118400 Rh7BG125400 Rh7BG125600 Rh7BG125700 Rh7BG125800 Rh7BG125900 Rh7BG126000 Rh7BG126400 Rh7BG126600 Rh7BG126700 Rh7BG166200 Rh7DG118600 Rh7DG118700 Rh7DG118900 Rh7DG119000 Rh7DG119100 Rh7DG127400 Rh7DG127600 Rh7DG127700 Rh7DG127900 Rh7DG128200
rosa_wichuraiana Rw1G013270 Rw1G020790 Rw2G027890 Rw2G028040 Rw3G019240 Rw4G014070 Rw4G020540 Rw5G021320 Rw5G022970 Rw6G016920 Rw7G010020 Rw7G010040 Rw7G010580 Rw7G010590 Rw7G010600 Rw7G010610 Rw7G010620 Rw7G010630 Rw7G010640 Rw7G010690

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 173
AclWI GGATC 1 cut(s) 269
AfaI GTAC 1 cut(s) 287
AgeI ACCGGT 1 cut(s) 166
AgsI TTSAA 1 cut(s) 36
AjnI CCWGG 1 cut(s) 185
AluBI AGCT 2 cut(s) 10, 22
AluI AGCT 2 cut(s) 10, 22
Alw21I GWGCWC 1 cut(s) 12
Alw26I GTCTC 1 cut(s) 140
AlwI GGATC 1 cut(s) 269
AoxI GGCC 1 cut(s) 231
AsiGI ACCGGT 1 cut(s) 166
AsuHPI GGTGA 2 cut(s) 76, 262
BanII GRGCYC 1 cut(s) 12
Bbv12I GWGCWC 1 cut(s) 12
BccI CCATC 1 cut(s) 184
BciT130I CCWGG 1 cut(s) 187
BcoDI GTCTC 1 cut(s) 140
Bme1390I CCNGG 1 cut(s) 187
BmiI GGNNCC 1 cut(s) 171
BmrFI CCNGG 1 cut(s) 187
BplI GAGNNNNNCTC 1 cut(s) 31
BpuEI CTTGAG 2 cut(s) 148, 225
BsaJI CCNNGG 2 cut(s) 90, 185
BsaWI WCCGGW 1 cut(s) 166
Bse118I RCCGGY 1 cut(s) 166
BseBI CCWGG 1 cut(s) 187
BseDI CCNNGG 2 cut(s) 90, 185
BseGI GGATG 2 cut(s) 160, 195
BseMII CTCAG 1 cut(s) 30
BseRI GAGGAG 1 cut(s) 314
BshFI GGCC 1 cut(s) 233
BshTI ACCGGT 1 cut(s) 166
BsiHKAI GWGCWC 1 cut(s) 12
BsiSI CCGG 1 cut(s) 167
BsmAI GTCTC 1 cut(s) 140
BsnI GGCC 1 cut(s) 233
Bsp1286I GDGCHC 1 cut(s) 12
Bsp143I GATC 2 cut(s) 106, 274
BspACI CCGC 1 cut(s) 173
BspANI GGCC 1 cut(s) 233
BspCNI CTCAG 1 cut(s) 29
BspHI TCATGA 1 cut(s) 42
BspLI GGNNCC 1 cut(s) 171
BspPI GGATC 1 cut(s) 269
BsrFI RCCGGY 1 cut(s) 166
BssAI RCCGGY 1 cut(s) 166
BssECI CCNNGG 2 cut(s) 90, 185
BssMI GATC 2 cut(s) 106, 274
Bst2UI CCWGG 1 cut(s) 187
Bst6I CTCTTC 2 cut(s) 156, 265
BstDEI CTNAG 1 cut(s) 16
BstF5I GGATG 2 cut(s) 160, 195
BstKTI GATC 2 cut(s) 109, 277
BstMAI GTCTC 1 cut(s) 140
BstMBI GATC 2 cut(s) 106, 274
BstMWI GCNNNNNNNGC 1 cut(s) 181
BstNI CCWGG 1 cut(s) 187
BstSCI CCNGG 1 cut(s) 185
BstX2I RGATCY 1 cut(s) 274
BstYI RGATCY 1 cut(s) 274
BsuRI GGCC 1 cut(s) 233
BtsCI GGATG 2 cut(s) 160, 195
CciI TCATGA 1 cut(s) 42
Cfr10I RCCGGY 1 cut(s) 166
Csp6I GTAC 1 cut(s) 286
CspAI ACCGGT 1 cut(s) 166
CviAII CATG 2 cut(s) 43, 258
CviJI RGCY 5 cut(s) 10, 22, 89, 233, 310
CviKI_1 RGCY 5 cut(s) 10, 22, 89, 233, 310
CviQI GTAC 1 cut(s) 286
DdeI CTNAG 1 cut(s) 16
DpnI GATC 2 cut(s) 108, 276
DpnII GATC 2 cut(s) 106, 274
Eam1104I CTCTTC 2 cut(s) 156, 265
EarI CTCTTC 2 cut(s) 156, 265
Ecl136II GAGCTC 1 cut(s) 10
Eco24I GRGCYC 1 cut(s) 12
Eco53kI GAGCTC 1 cut(s) 10
EcoICRI GAGCTC 1 cut(s) 10
EcoRII CCWGG 1 cut(s) 185
EcoT38I GRGCYC 1 cut(s) 12
FaeI CATG 2 cut(s) 46, 261
FaiI YATR 6 cut(s) 44, 119, 259, 306, 332, 334
FatI CATG 2 cut(s) 42, 257
FokI GGATG 2 cut(s) 147, 202
FriOI GRGCYC 1 cut(s) 12
HaeIII GGCC 1 cut(s) 233
HapII CCGG 1 cut(s) 167
Hin1II CATG 2 cut(s) 46, 261
HinfI GANTC 2 cut(s) 14, 148
HpaII CCGG 1 cut(s) 167
HphI GGTGA 2 cut(s) 76, 262
Hpy166II GTNNAC 1 cut(s) 158
Hpy188I TCNGA 3 cut(s) 7, 19, 80
Hpy188III TCNNGA 1 cut(s) 43
Hpy8I GTNNAC 1 cut(s) 158
HpyCH4V TGCA 3 cut(s) 55, 121, 257
HpyF10VI GCNNNNNNNGC 1 cut(s) 181
HpyF3I CTNAG 1 cut(s) 16
Hsp92II CATG 2 cut(s) 46, 261
Kzo9I GATC 2 cut(s) 106, 274
LpnPI CCDG 7 cut(s) 95, 172, 180, 199, 233, 309, 324
MaeIII GTNAC 3 cut(s) 94, 177, 218
MalI GATC 2 cut(s) 108, 276
MboI GATC 2 cut(s) 106, 274
MboII GAAGA 4 cut(s) 58, 113, 143, 282
MflI RGATCY 1 cut(s) 274
MhlI GDGCHC 1 cut(s) 12
MluCI AATT 1 cut(s) 264
MlyI GAGTC 2 cut(s) 8, 142
MmeI TCCRAC 1 cut(s) 58
MnlI CCTC 4 cut(s) 55, 60, 85, 292
MseI TTAA 1 cut(s) 228
MspA1I CMGCKG 1 cut(s) 175
MspI CCGG 1 cut(s) 167
MspR9I CCNGG 1 cut(s) 187
MvaI CCWGG 1 cut(s) 187
MwoI GCNNNNNNNGC 1 cut(s) 181
NdeII GATC 2 cut(s) 106, 274
NlaIII CATG 2 cut(s) 46, 261
NlaIV GGNNCC 1 cut(s) 171
NmeAIII GCCGAG 1 cut(s) 115
PagI TCATGA 1 cut(s) 42
PinAI ACCGGT 1 cut(s) 166
PleI GAGTC 2 cut(s) 8, 142
PpsI GAGTC 2 cut(s) 8, 142
Psp124BI GAGCTC 1 cut(s) 12
Psp6I CCWGG 1 cut(s) 185
PspGI CCWGG 1 cut(s) 185
PspN4I GGNNCC 1 cut(s) 171
PsuI RGATCY 1 cut(s) 274
RsaI GTAC 1 cut(s) 287
RsaNI GTAC 1 cut(s) 286
SacI GAGCTC 1 cut(s) 12
SaqAI TTAA 1 cut(s) 228
Sau3AI GATC 2 cut(s) 106, 274
SchI GAGTC 2 cut(s) 8, 142
ScrFI CCNGG 1 cut(s) 187
SduI GDGCHC 1 cut(s) 12
SetI ASST 4 cut(s) 12, 24, 66, 96
SmlI CTYRAG 2 cut(s) 127, 240
SmoI CTYRAG 2 cut(s) 127, 240
Sse9I AATT 1 cut(s) 264
SsiI CCGC 1 cut(s) 173
SstI GAGCTC 1 cut(s) 12
StyD4I CCNGG 1 cut(s) 185
TaqI TCGA 1 cut(s) 12
TasI AATT 1 cut(s) 264
Tru1I TTAA 1 cut(s) 228
Tru9I TTAA 1 cut(s) 228
TspDTI ATGAA 1 cut(s) 59
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.