Rh6BG197700

Cytochrome p450

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
Physical Location & Seq
Reverse (-)
37217618 .. 37218262
645 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG197700.1

Sequence Viewer

Length: 645 bp
ATGTTCAATCTCCTGCATCTACTGGAGCTGAAACTAAATGGAAACTTCTCAAGCTTGTTGCAACATTCTTCCTTAAAATTAGTACTTCTGGCCATTTTCCTCATCCTCTTATTTAGATGGCTTTTCAACTTCATAAATTCAACCACCCCCACAAACAGATCACCACCTTCTCCACCAAAGCTGCCTGTGATTGGAAACCTTCATCAACTAGGCTTGCACGTTCATCGTTCACTTCAGTCCTTAGCTCAACAACATGGGCCCCTCATGCTGCTGCACTTCGGTAGCGTGCCAGTCCTTGTGGTCTCGTCGACTGAGGCTGCCCATGAGATCATGAAGACCCATGATGGTGCATTCACTGATAGACCCAAATTTACATTCTTTAAGAAGGTTCTCTATAATTGCAAAGATATCCTATCAGCACCTTATGGTGAGTATTGGAGGCAGATAAAAAGTATATGTGTCTTAAACCTTTTGAGCAATAAAAGGGTTTGCTCTTTTCGTGTGGTGATTGAAGAGGAATCAAAATCCATGATCAATAACATACAACAGTTCTGTTCTATATCATCCTCCCCCTCCTCTTCCTCCTTATCAGTTTTGAATTTAAGTGAAATGTTTCTGACACTTACTAGTGATATCGTCTGTTGA

Protein Analysis

214

Amino Acids

24.11

Weight (kDa)

9.2

Isoelectric Point (pI)

51.57

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 55 - 214 2.5e-21 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000061)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G48270 AT3G48280 AT3G48290 AT3G48290 AT3G48300 AT3G48300 AT3G48310 AT3G48320 AT4G20235 AT4G20235
fragaria_vesca FvH4_2g12910 FvH4_2g12910 FvH4_2g12910 FvH4_2g12910 FvH4_2g12910 FvH4_2g36190 FvH4_3g14160 FvH4_3g14210 FvH4_3g14260 FvH4_3g14260 FvH4_3g21100 FvH4_3g21380 FvH4_4g24460 FvH4_4g24500 FvH4_5g06571 FvH4_5g06571 FvH4_5g06571 FvH4_5g06571 FvH4_5g06572 FvH4_5g06573 FvH4_5g06574 FvH4_5g06575 FvH4_5g06576 FvH4_5g06577 FvH4_5g06577 FvH4_5g07540 FvH4_5g07550 FvH4_5g07560 FvH4_5g07570 FvH4_5g29491 FvH4_5g29492 FvH4_6g23870 FvH4_6g23880 FvH4_6g26870 FvH4_7g11861 FvH4_7g11862 FvH4_7g13050 FvH4_7g13060 FvH4_7g13080 FvH4_7g13080 FvH4_7g22630 FvH4_7g22650 FvH4_7g22651 FvH4_7g23020
malus_domestica MD03G1207400.v1.1 MD03G1214800.v1.1 MD03G1218500.v1.1 MD06G1163100.v1.1 MD06G1163300.v1.1 MD06G1163400.v1.1 MD06G1163500.v1.1 MD06G1163600.v1.1 MD06G1163800.v1.1 MD06G1164000.v1.1 MD06G1164100.v1.1 MD06G1224400.v1.1 MD08G1222800.v1.1 MD08G1222900.v1.1 MD08G1223100.v1.1 MD11G1091500.v1.1 MD11G1091800.v1.1 MD14G1163200.v1.1 MD14G1169000.v1.1 MD15G1207200.v1.1 MD15G1207300.v1.1 MD17G1259400.v1.1
prunus_persica Prupe.4G198100_v2.0.a1 Prupe.4G199100_v2.0.a1 Prupe.4G199400_v2.0.a1 Prupe.4G199800_v2.0.a1 Prupe.4G225200_v2.0.a1 Prupe.4G239100_v2.0.a1 Prupe.5G156600_v2.0.a1 Prupe.5G163500_v2.0.a1 Prupe.7G209500_v2.0.a1 Prupe.I003400_v2.0.a1
pyrus_communis pycom03g16340 pycom06g14600 pycom06g14610 pycom06g14620 pycom06g14630 pycom06g14640 pycom06g14670 pycom06g14690 pycom08g19390 pycom08g19400 pycom08g19410 pycom11g07600 pycom11g07610 pycom11g07620 pycom11g07660 pycom14g13580 pycom14g14080 pycom14g14100 pycom14g14110 pycom15g18380 pycom17g26080
rosa_chinensis RchiOBHm_Chr1g0339441 RchiOBHm_Chr1g0339451 RchiOBHm_Chr1g0352191 RchiOBHm_Chr1g0368221 RchiOBHm_Chr2g0129531 RchiOBHm_Chr2g0129541 RchiOBHm_Chr3g0477631 RchiOBHm_Chr3g0482551 RchiOBHm_Chr3g0482561 RchiOBHm_Chr3g0482571 RchiOBHm_Chr4g0411601 RchiOBHm_Chr4g0422181 RchiOBHm_Chr5g0036661 RchiOBHm_Chr5g0036731 RchiOBHm_Chr6g0274021 RchiOBHm_Chr7g0190921 RchiOBHm_Chr7g0190931 RchiOBHm_Chr7g0190941 RchiOBHm_Chr7g0190951 RchiOBHm_Chr7g0190961 RchiOBHm_Chr7g0190971 RchiOBHm_Chr7g0191001 RchiOBHm_Chr7g0191011 RchiOBHm_Chr7g0191021 RchiOBHm_Chr7g0192181 RchiOBHm_Chr7g0192191 RchiOBHm_Chr7g0192201 RchiOBHm_Chr7g0192221 RchiOBHm_Chr7g0192231 RchiOBHm_Chr7g0192281 RchiOBHm_Chr7g0197311
rosa_laevigata RLG00000003942 RLG00000004345 RLG00000004379 RLG00000004383 RLG00000004384 RLG00000004385 RLG00000004387 RLG00000004388 RLG00000004389 RLG00000004480 RLG00000004481 RLG00000004482 RLG00000004483 RLG00000004485 RLG00000008342 RLG00000008401 RLG00000013583 RLG00000017044 RLG00000027229 RLG00000028349 RLG00000028350 RLG00000028353 RLG00000028820 RLG00000033707 RLG00000033710
rosa_multiflora Rmu_co8020340.1_g000001 Rmu_co8096640.1_g000001 Rmu_co8214930.1_g000001 Rmu_co8223272.1_g000001 Rmu_co8282535.1_g000001 Rmu_co8343567.1_g000001 Rmu_co8404191.1_g000001 Rmu_co8455157.1_g000001 Rmu_sc0000062.1_g000028 Rmu_sc0000082.1_g000091 Rmu_sc0000509.1_g000017 Rmu_sc0000775.1_g000001 Rmu_sc0000999.1_g000034 Rmu_sc0001559.1_g000004 Rmu_sc0001559.1_g000009 Rmu_sc0002164.1_g000001 Rmu_sc0002164.1_g000005 Rmu_sc0002164.1_g000007 Rmu_sc0002164.1_g000008 Rmu_sc0002164.1_g000009 Rmu_sc0002164.1_g000019 Rmu_sc0002247.1_g000009 Rmu_sc0002373.1_g000002 Rmu_sc0002373.1_g000003 Rmu_sc0002944.1_g000059 Rmu_sc0003930.1_g000004 Rmu_sc0004958.1_g000001 Rmu_sc0005197.1_g000014 Rmu_sc0005898.1_g000008 Rmu_sc0005898.1_g000009 Rmu_sc0005898.1_g000015 Rmu_sc0006059.1_g000004 Rmu_sc0006059.1_g000010 Rmu_sc0006903.1_g000007 Rmu_sc0006903.1_g000008 Rmu_sc0006968.1_g000001 Rmu_sc0011009.1_g000009 Rmu_sc0022852.1_g000002 Rmu_sc0033854.1_g000001 Rmu_ssc0000421.1_g000057 Rmu_ssc0000421.1_g000067 Rmu_ssc0000421.1_g000069 Rmu_ssc0000421.1_g000072 Rmu_ssc0000421.1_g000081 Rmu_ssc0000421.1_g000086
rosa_roxburghii Rroxscaffold_158G00443680 Rroxscaffold_158G00443710 Rroxscaffold_158G00443720 Rroxscaffold_158G00443740 Rroxscaffold_1G00034950 Rroxscaffold_1G00044240 Rroxscaffold_1G00044270 Rroxscaffold_3G00241380 Rroxscaffold_3G00247000 Rroxscaffold_3G00263120 Rroxscaffold_3G00263150 Rroxscaffold_3G00263160 Rroxscaffold_3G00263170 Rroxscaffold_3G00263180 Rroxscaffold_3G00263190 Rroxscaffold_3G00263210 Rroxscaffold_3G00263230 Rroxscaffold_3G00263260 Rroxscaffold_3G00264110 Rroxscaffold_3G00264130 Rroxscaffold_3G00264160 Rroxscaffold_3G00264180 Rroxscaffold_3G00264200 Rroxscaffold_4G00288750 Rroxscaffold_4G00303110 Rroxscaffold_4G00303120 Rroxscaffold_4G00322280 Rroxscaffold_5G00356200 Rroxscaffold_6G00399150 Rroxscaffold_6G00399290 Rroxscaffold_7G00194770
rosa_rugosa Rorug01G0225300 Rorug01G0225400 Rorug01G0225800 Rorug01G0226000 Rorug01G0339400 Rorug01G0451500 Rorug03G0196900 Rorug03G0294900 Rorug04G0107500 Rorug04G0107600 Rorug04G0129700 Rorug04G0178000 Rorug05G0144900.1 Rorug05G0145000 Rorug05G0228000 Rorug05G0228600 Rorug06G0078300 Rorug06G0508000 Rorug06G0508100 Rorug06G0508100 Rorug06G0508400 Rorug06G0513400 Rorug07G0000100 Rorug07G0000200 Rorug07G0000300 Rorug07G0000500 Rorug07G0000800
rosa_samantha Rh1BG060400 Rh1BG210300 Rh1BG210700 Rh1BG210800 Rh1BG309800 Rh1CG223800 Rh1CG224200 Rh1CG325200 Rh1DG237000 Rh1DG237400 Rh1DG341600 Rh2DG365700 Rh3AG212500 Rh3AG248400 Rh3CG239800 Rh3DG239300 Rh4AG169300 Rh4BG166200 Rh4BG240500 Rh4BG240600 Rh4DG163600 Rh5AG249600 Rh5AG249900 Rh5AG250000 Rh5CG283100 Rh5CG283200 Rh5CG283400 Rh5DG259200 Rh5DG259800 Rh6BG197700 Rh6CG197800 Rh6DG189400 Rh7AG114900 Rh7AG115000 Rh7AG115200 Rh7AG115300 Rh7AG115400 Rh7AG115500 Rh7AG123900 Rh7AG124100 Rh7AG124300 Rh7BG117200 Rh7BG117400 Rh7BG118400 Rh7BG125400 Rh7BG125600 Rh7BG125700 Rh7BG125800 Rh7BG125900 Rh7BG126000 Rh7BG126400 Rh7BG126600 Rh7BG126700 Rh7BG166200 Rh7DG118600 Rh7DG118700 Rh7DG118900 Rh7DG119000 Rh7DG119100 Rh7DG127400 Rh7DG127600 Rh7DG127700 Rh7DG127900 Rh7DG128200
rosa_wichuraiana Rw1G013270 Rw1G020790 Rw2G027890 Rw2G028040 Rw3G019240 Rw4G014070 Rw4G020540 Rw5G021320 Rw5G022970 Rw6G016920 Rw7G010020 Rw7G010040 Rw7G010580 Rw7G010590 Rw7G010600 Rw7G010610 Rw7G010620 Rw7G010630 Rw7G010640 Rw7G010690

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 308
AcoI YGGCCR 1 cut(s) 90
AcsI RAATTY 3 cut(s) 136, 368, 598
AcuI CTGAAG 1 cut(s) 218
AfaI GTAC 1 cut(s) 84
AfiI CCNNNNNNNGG 1 cut(s) 191
AgsI TTSAA 5 cut(s) 7, 127, 141, 512, 598
AhlI ACTAGT 1 cut(s) 626
AjuI GAANNNNNNNTTGG 2 cut(s) 359, 391
AluBI AGCT 4 cut(s) 28, 54, 181, 245
AluI AGCT 4 cut(s) 28, 54, 181, 245
Alw26I GTCTC 1 cut(s) 307
AoxI GGCC 2 cut(s) 90, 257
ApaI GGGCCC 1 cut(s) 261
ApeKI GCWGC 4 cut(s) 181, 268, 271, 317
ApoI RAATTY 3 cut(s) 136, 368, 598
Asp700I GAANNNNTTC 1 cut(s) 612
AspS9I GGNCC 2 cut(s) 257, 258
AsuHPI GGTGA 3 cut(s) 153, 440, 517
BaeGI GKGCMC 1 cut(s) 261
BalI TGGCCA 1 cut(s) 92
BanII GRGCYC 1 cut(s) 261
BbsI GAAGAC 1 cut(s) 341
BbvI GCAGC 4 cut(s) 168, 255, 258, 304
BccI CCATC 2 cut(s) 111, 338
BcgI CGANNNNNNTGC 2 cut(s) 206, 240
BclI TGATCA 1 cut(s) 531
BcoDI GTCTC 1 cut(s) 307
BcuI ACTAGT 1 cut(s) 626
BfaI CTAG 2 cut(s) 209, 627
BisI GCNGC 4 cut(s) 182, 269, 272, 318
BlsI GCNGC 4 cut(s) 183, 270, 273, 319
BmcAI AGTACT 1 cut(s) 84
BmgT120I GGNCC 2 cut(s) 257, 258
BmiI GGNNCC 2 cut(s) 259, 260
BmsI GCATC 1 cut(s) 25
BpiI GAAGAC 1 cut(s) 341
BpmI CTGGAG 1 cut(s) 44
Bpu10I CCTNAGC 1 cut(s) 241
BpuEI CTTGAG 1 cut(s) 34
BsaI GGTCTC 1 cut(s) 307
Bsc4I CCNNNNNNNGG 1 cut(s) 191
Bse1I ACTGG 2 cut(s) 27, 290
BseGI GGATG 2 cut(s) 102, 563
BseLI CCNNNNNNNGG 1 cut(s) 191
BseMII CTCAG 1 cut(s) 303
BseNI ACTGG 2 cut(s) 27, 290
BseRI GAGGAG 1 cut(s) 565
BseSI GKGCMC 1 cut(s) 261
BseXI GCAGC 4 cut(s) 168, 255, 258, 304
BsgI GTGCAG 1 cut(s) 257
BshFI GGCC 2 cut(s) 92, 259
BslI CCNNNNNNNGG 1 cut(s) 191
BsmAI GTCTC 1 cut(s) 307
BsmI GAATGC 1 cut(s) 350
BsnI GGCC 2 cut(s) 92, 259
Bso31I GGTCTC 1 cut(s) 307
Bsp120I GGGCCC 1 cut(s) 257
Bsp1286I GDGCHC 1 cut(s) 261
Bsp143I GATC 3 cut(s) 158, 327, 531
BspANI GGCC 2 cut(s) 92, 259
BspCNI CTCAG 1 cut(s) 304
BspHI TCATGA 1 cut(s) 330
BspLI GGNNCC 2 cut(s) 259, 260
BspTNI GGTCTC 1 cut(s) 307
BsrI ACTGG 2 cut(s) 27, 290
BssMI GATC 3 cut(s) 158, 327, 531
Bst4CI ACNGT 1 cut(s) 549
Bst6I CTCTTC 2 cut(s) 507, 583
BstC8I GCNNGC 2 cut(s) 215, 287
BstDEI CTNAG 2 cut(s) 241, 312
BstF5I GGATG 2 cut(s) 102, 563
BstKTI GATC 3 cut(s) 161, 330, 534
BstMAI GTCTC 1 cut(s) 307
BstMBI GATC 3 cut(s) 158, 327, 531
BstMWI GCNNNNNNNGC 1 cut(s) 265
BstSLI GKGCMC 1 cut(s) 261
BstV1I GCAGC 4 cut(s) 168, 255, 258, 304
BstV2I GAAGAC 1 cut(s) 341
BsuRI GGCC 2 cut(s) 92, 259
BtsCI GGATG 2 cut(s) 102, 563
BtsIMutI CAGTG 1 cut(s) 354
Cac8I GCNNGC 2 cut(s) 215, 287
CciI TCATGA 1 cut(s) 330
Cfr13I GGNCC 2 cut(s) 257, 258
Csp6I GTAC 1 cut(s) 83
CviAII CATG 6 cut(s) 254, 265, 323, 331, 341, 529
CviJI RGCY 9 cut(s) 28, 54, 92, 121, 181, 213, 245, 259, 317
CviKI_1 RGCY 9 cut(s) 28, 54, 92, 121, 181, 213, 245, 259, 317
CviQI GTAC 1 cut(s) 83
DdeI CTNAG 2 cut(s) 241, 312
DpnI GATC 3 cut(s) 160, 329, 533
DpnII GATC 3 cut(s) 158, 327, 531
EaeI YGGCCR 1 cut(s) 90
Eam1104I CTCTTC 2 cut(s) 507, 583
EarI CTCTTC 2 cut(s) 507, 583
Eco24I GRGCYC 1 cut(s) 261
Eco31I GGTCTC 1 cut(s) 307
Eco32I GATATC 2 cut(s) 409, 634
Eco57I CTGAAG 1 cut(s) 218
EcoO109I RGGNCCY 1 cut(s) 258
EcoRV GATATC 2 cut(s) 409, 634
EcoT38I GRGCYC 1 cut(s) 261
FaeI CATG 6 cut(s) 257, 268, 326, 334, 344, 532
FatI CATG 6 cut(s) 253, 264, 322, 330, 340, 528
FbaI TGATCA 1 cut(s) 531
FblI GTMKAC 1 cut(s) 308
Fnu4HI GCNGC 4 cut(s) 182, 269, 272, 318
FokI GGATG 2 cut(s) 89, 550
FriOI GRGCYC 1 cut(s) 261
Fsp4HI GCNGC 4 cut(s) 182, 269, 272, 318
FspBI CTAG 2 cut(s) 209, 627
GluI GCNGC 4 cut(s) 182, 269, 272, 318
GsuI CTGGAG 1 cut(s) 44
HaeIII GGCC 2 cut(s) 92, 259
Hin1II CATG 6 cut(s) 257, 268, 326, 334, 344, 532
HincII GTYRAC 1 cut(s) 309
HindII GTYRAC 1 cut(s) 309
HindIII AAGCTT 1 cut(s) 52
HinfI GANTC 1 cut(s) 518
HphI GGTGA 3 cut(s) 153, 440, 517
Hpy166II GTNNAC 2 cut(s) 230, 309
Hpy188I TCNGA 1 cut(s) 618
Hpy188III TCNNGA 1 cut(s) 331
Hpy8I GTNNAC 2 cut(s) 230, 309
Hpy99I CGWCG 1 cut(s) 310
HpyAV CCTTC 3 cut(s) 177, 209, 379
HpyCH4III ACNGT 1 cut(s) 549
HpyCH4IV ACGT 1 cut(s) 219
HpyCH4V TGCA 6 cut(s) 16, 61, 217, 274, 350, 402
HpyF10VI GCNNNNNNNGC 1 cut(s) 265
HpyF3I CTNAG 2 cut(s) 241, 312
HpySE526I ACGT 1 cut(s) 219
Hsp92II CATG 6 cut(s) 257, 268, 326, 334, 344, 532
Ksp22I TGATCA 1 cut(s) 531
Kzo9I GATC 3 cut(s) 158, 327, 531
LmnI GCTCC 1 cut(s) 25
LpnPI CCDG 5 cut(s) 8, 26, 74, 198, 303
Lsp1109I GCAGC 4 cut(s) 168, 255, 258, 304
LweI GCATC 1 cut(s) 25
MaeI CTAG 2 cut(s) 209, 627
MaeII ACGT 1 cut(s) 219
MalI GATC 3 cut(s) 160, 329, 533
MboI GATC 3 cut(s) 158, 327, 531
MboII GAAGA 4 cut(s) 60, 346, 524, 570
MhlI GDGCHC 1 cut(s) 261
MlsI TGGCCA 1 cut(s) 92
MluCI AATT 5 cut(s) 77, 136, 368, 397, 598
MluNI TGGCCA 1 cut(s) 92
Mox20I TGGCCA 1 cut(s) 92
MroXI GAANNNNTTC 1 cut(s) 612
MscI TGGCCA 1 cut(s) 92
MseI TTAA 4 cut(s) 74, 381, 464, 602
MslI CAYNNNNRTG 1 cut(s) 345
Msp20I TGGCCA 1 cut(s) 92
Mva1269I GAATGC 1 cut(s) 350
MwoI GCNNNNNNNGC 1 cut(s) 265
NdeII GATC 3 cut(s) 158, 327, 531
NlaIII CATG 6 cut(s) 257, 268, 326, 334, 344, 532
NlaIV GGNNCC 2 cut(s) 259, 260
PagI TCATGA 1 cut(s) 330
PctI GAATGC 1 cut(s) 350
PdmI GAANNNNTTC 1 cut(s) 612
PfeI GAWTC 1 cut(s) 518
PkrI GCNGC 4 cut(s) 183, 270, 273, 319
PspN4I GGNNCC 2 cut(s) 259, 260
PspOMI GGGCCC 1 cut(s) 257
PspPI GGNCC 2 cut(s) 257, 258
RsaI GTAC 1 cut(s) 84
RsaNI GTAC 1 cut(s) 83
RseI CAYNNNNRTG 1 cut(s) 345
SalI GTCGAC 1 cut(s) 307
SaqAI TTAA 4 cut(s) 74, 381, 464, 602
SatI GCNGC 4 cut(s) 182, 269, 272, 318
Sau3AI GATC 3 cut(s) 158, 327, 531
Sau96I GGNCC 2 cut(s) 257, 258
ScaI AGTACT 1 cut(s) 84
SduI GDGCHC 1 cut(s) 261
SfaNI GCATC 1 cut(s) 25
SmiMI CAYNNNNRTG 1 cut(s) 345
SmlI CTYRAG 1 cut(s) 49
SmoI CTYRAG 1 cut(s) 49
SpeI ACTAGT 1 cut(s) 626
Sse9I AATT 5 cut(s) 77, 136, 368, 397, 598
SspMI CTAG 2 cut(s) 209, 627
TaaI ACNGT 1 cut(s) 549
TaiI ACGT 1 cut(s) 222
TaqI TCGA 1 cut(s) 308
TasI AATT 5 cut(s) 77, 136, 368, 397, 598
TatI WGTACW 1 cut(s) 82
TfiI GAWTC 1 cut(s) 518
Tru1I TTAA 4 cut(s) 74, 381, 464, 602
Tru9I TTAA 4 cut(s) 74, 381, 464, 602
TscAI CASTG 1 cut(s) 361
TseI GCWGC 4 cut(s) 181, 268, 271, 317
TspDTI ATGAA 4 cut(s) 121, 191, 212, 347
TspRI CASTG 1 cut(s) 361
XapI RAATTY 3 cut(s) 136, 368, 598
XmiI GTMKAC 1 cut(s) 308
XmnI GAANNNNTTC 1 cut(s) 612
XspI CTAG 2 cut(s) 209, 627
ZrmI AGTACT 1 cut(s) 84
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.