Rh7AG115000

Cytochrome p450

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
Physical Location & Seq
Forward (+)
8958374 .. 8959020
647 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG115000.1

Sequence Viewer

Length: 402 bp
ATGGATGATACTGGTCACAAGGAGGACGATGAAAAGGATTTTGTGGACGTTTTACTTGAGATTCAGCAGGAAAACTTGCTTGGTTTTCGTATTGACAAAGTTACCATAAAAGCTCTCATCTTGGATATGTTCCTTGCTGGGACGGATACCACAGCGACGCTTCTAGAGTGGGCAATGGCTGAGATTTTAAAGCACCCGAAGGTCATGATCAAATTGCAGAATGAAGTAAGGGGCGTTAACAAAGCTGGAGAAGACATATTAACAGAGGATGATTTGGTTGATATGCACTACTTGAAGGCGGTGGTCAAGGAGACTCTTCGCTTACATCCTCCACTTTCACTGCTATTGCCTAGAACAGTAGAATGTCAAGCAAGATGTGAAAATAAACGGTTACAACATTAG

Protein Analysis

133

Amino Acids

15.25

Weight (kDa)

5.06

Isoelectric Point (pI)

37.38

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 9 - 124 2.2e-30 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000061)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G48270 AT3G48280 AT3G48290 AT3G48290 AT3G48300 AT3G48300 AT3G48310 AT3G48320 AT4G20235 AT4G20235
fragaria_vesca FvH4_2g12910 FvH4_2g12910 FvH4_2g12910 FvH4_2g12910 FvH4_2g12910 FvH4_2g36190 FvH4_3g14160 FvH4_3g14210 FvH4_3g14260 FvH4_3g14260 FvH4_3g21100 FvH4_3g21380 FvH4_4g24460 FvH4_4g24500 FvH4_5g06571 FvH4_5g06571 FvH4_5g06571 FvH4_5g06571 FvH4_5g06572 FvH4_5g06573 FvH4_5g06574 FvH4_5g06575 FvH4_5g06576 FvH4_5g06577 FvH4_5g06577 FvH4_5g07540 FvH4_5g07550 FvH4_5g07560 FvH4_5g07570 FvH4_5g29491 FvH4_5g29492 FvH4_6g23870 FvH4_6g23880 FvH4_6g26870 FvH4_7g11861 FvH4_7g11862 FvH4_7g13050 FvH4_7g13060 FvH4_7g13080 FvH4_7g13080 FvH4_7g22630 FvH4_7g22650 FvH4_7g22651 FvH4_7g23020
malus_domestica MD03G1207400.v1.1 MD03G1214800.v1.1 MD03G1218500.v1.1 MD06G1163100.v1.1 MD06G1163300.v1.1 MD06G1163400.v1.1 MD06G1163500.v1.1 MD06G1163600.v1.1 MD06G1163800.v1.1 MD06G1164000.v1.1 MD06G1164100.v1.1 MD06G1224400.v1.1 MD08G1222800.v1.1 MD08G1222900.v1.1 MD08G1223100.v1.1 MD11G1091500.v1.1 MD11G1091800.v1.1 MD14G1163200.v1.1 MD14G1169000.v1.1 MD15G1207200.v1.1 MD15G1207300.v1.1 MD17G1259400.v1.1
prunus_persica Prupe.4G198100_v2.0.a1 Prupe.4G199100_v2.0.a1 Prupe.4G199400_v2.0.a1 Prupe.4G199800_v2.0.a1 Prupe.4G225200_v2.0.a1 Prupe.4G239100_v2.0.a1 Prupe.5G156600_v2.0.a1 Prupe.5G163500_v2.0.a1 Prupe.7G209500_v2.0.a1 Prupe.I003400_v2.0.a1
pyrus_communis pycom03g16340 pycom06g14600 pycom06g14610 pycom06g14620 pycom06g14630 pycom06g14640 pycom06g14670 pycom06g14690 pycom08g19390 pycom08g19400 pycom08g19410 pycom11g07600 pycom11g07610 pycom11g07620 pycom11g07660 pycom14g13580 pycom14g14080 pycom14g14100 pycom14g14110 pycom15g18380 pycom17g26080
rosa_chinensis RchiOBHm_Chr1g0339441 RchiOBHm_Chr1g0339451 RchiOBHm_Chr1g0352191 RchiOBHm_Chr1g0368221 RchiOBHm_Chr2g0129531 RchiOBHm_Chr2g0129541 RchiOBHm_Chr3g0477631 RchiOBHm_Chr3g0482551 RchiOBHm_Chr3g0482561 RchiOBHm_Chr3g0482571 RchiOBHm_Chr4g0411601 RchiOBHm_Chr4g0422181 RchiOBHm_Chr5g0036661 RchiOBHm_Chr5g0036731 RchiOBHm_Chr6g0274021 RchiOBHm_Chr7g0190921 RchiOBHm_Chr7g0190931 RchiOBHm_Chr7g0190941 RchiOBHm_Chr7g0190951 RchiOBHm_Chr7g0190961 RchiOBHm_Chr7g0190971 RchiOBHm_Chr7g0191001 RchiOBHm_Chr7g0191011 RchiOBHm_Chr7g0191021 RchiOBHm_Chr7g0192181 RchiOBHm_Chr7g0192191 RchiOBHm_Chr7g0192201 RchiOBHm_Chr7g0192221 RchiOBHm_Chr7g0192231 RchiOBHm_Chr7g0192281 RchiOBHm_Chr7g0197311
rosa_laevigata RLG00000003942 RLG00000004345 RLG00000004379 RLG00000004383 RLG00000004384 RLG00000004385 RLG00000004387 RLG00000004388 RLG00000004389 RLG00000004480 RLG00000004481 RLG00000004482 RLG00000004483 RLG00000004485 RLG00000008342 RLG00000008401 RLG00000013583 RLG00000017044 RLG00000027229 RLG00000028349 RLG00000028350 RLG00000028353 RLG00000028820 RLG00000033707 RLG00000033710
rosa_multiflora Rmu_co8020340.1_g000001 Rmu_co8096640.1_g000001 Rmu_co8214930.1_g000001 Rmu_co8223272.1_g000001 Rmu_co8282535.1_g000001 Rmu_co8343567.1_g000001 Rmu_co8404191.1_g000001 Rmu_co8455157.1_g000001 Rmu_sc0000062.1_g000028 Rmu_sc0000082.1_g000091 Rmu_sc0000509.1_g000017 Rmu_sc0000775.1_g000001 Rmu_sc0000999.1_g000034 Rmu_sc0001559.1_g000004 Rmu_sc0001559.1_g000009 Rmu_sc0002164.1_g000001 Rmu_sc0002164.1_g000005 Rmu_sc0002164.1_g000007 Rmu_sc0002164.1_g000008 Rmu_sc0002164.1_g000009 Rmu_sc0002164.1_g000019 Rmu_sc0002247.1_g000009 Rmu_sc0002373.1_g000002 Rmu_sc0002373.1_g000003 Rmu_sc0002944.1_g000059 Rmu_sc0003930.1_g000004 Rmu_sc0004958.1_g000001 Rmu_sc0005197.1_g000014 Rmu_sc0005898.1_g000008 Rmu_sc0005898.1_g000009 Rmu_sc0005898.1_g000015 Rmu_sc0006059.1_g000004 Rmu_sc0006059.1_g000010 Rmu_sc0006903.1_g000007 Rmu_sc0006903.1_g000008 Rmu_sc0006968.1_g000001 Rmu_sc0011009.1_g000009 Rmu_sc0022852.1_g000002 Rmu_sc0033854.1_g000001 Rmu_ssc0000421.1_g000057 Rmu_ssc0000421.1_g000067 Rmu_ssc0000421.1_g000069 Rmu_ssc0000421.1_g000072 Rmu_ssc0000421.1_g000081 Rmu_ssc0000421.1_g000086
rosa_roxburghii Rroxscaffold_158G00443680 Rroxscaffold_158G00443710 Rroxscaffold_158G00443720 Rroxscaffold_158G00443740 Rroxscaffold_1G00034950 Rroxscaffold_1G00044240 Rroxscaffold_1G00044270 Rroxscaffold_3G00241380 Rroxscaffold_3G00247000 Rroxscaffold_3G00263120 Rroxscaffold_3G00263150 Rroxscaffold_3G00263160 Rroxscaffold_3G00263170 Rroxscaffold_3G00263180 Rroxscaffold_3G00263190 Rroxscaffold_3G00263210 Rroxscaffold_3G00263230 Rroxscaffold_3G00263260 Rroxscaffold_3G00264110 Rroxscaffold_3G00264130 Rroxscaffold_3G00264160 Rroxscaffold_3G00264180 Rroxscaffold_3G00264200 Rroxscaffold_4G00288750 Rroxscaffold_4G00303110 Rroxscaffold_4G00303120 Rroxscaffold_4G00322280 Rroxscaffold_5G00356200 Rroxscaffold_6G00399150 Rroxscaffold_6G00399290 Rroxscaffold_7G00194770
rosa_rugosa Rorug01G0225300 Rorug01G0225400 Rorug01G0225800 Rorug01G0226000 Rorug01G0339400 Rorug01G0451500 Rorug03G0196900 Rorug03G0294900 Rorug04G0107500 Rorug04G0107600 Rorug04G0129700 Rorug04G0178000 Rorug05G0144900.1 Rorug05G0145000 Rorug05G0228000 Rorug05G0228600 Rorug06G0078300 Rorug06G0508000 Rorug06G0508100 Rorug06G0508100 Rorug06G0508400 Rorug06G0513400 Rorug07G0000100 Rorug07G0000200 Rorug07G0000300 Rorug07G0000500 Rorug07G0000800
rosa_samantha Rh1BG060400 Rh1BG210300 Rh1BG210700 Rh1BG210800 Rh1BG309800 Rh1CG223800 Rh1CG224200 Rh1CG325200 Rh1DG237000 Rh1DG237400 Rh1DG341600 Rh2DG365700 Rh3AG212500 Rh3AG248400 Rh3CG239800 Rh3DG239300 Rh4AG169300 Rh4BG166200 Rh4BG240500 Rh4BG240600 Rh4DG163600 Rh5AG249600 Rh5AG249900 Rh5AG250000 Rh5CG283100 Rh5CG283200 Rh5CG283400 Rh5DG259200 Rh5DG259800 Rh6BG197700 Rh6CG197800 Rh6DG189400 Rh7AG114900 Rh7AG115000 Rh7AG115200 Rh7AG115300 Rh7AG115400 Rh7AG115500 Rh7AG123900 Rh7AG124100 Rh7AG124300 Rh7BG117200 Rh7BG117400 Rh7BG118400 Rh7BG125400 Rh7BG125600 Rh7BG125700 Rh7BG125800 Rh7BG125900 Rh7BG126000 Rh7BG126400 Rh7BG126600 Rh7BG126700 Rh7BG166200 Rh7DG118600 Rh7DG118700 Rh7DG118900 Rh7DG119000 Rh7DG119100 Rh7DG127400 Rh7DG127600 Rh7DG127700 Rh7DG127900 Rh7DG128200
rosa_wichuraiana Rw1G013270 Rw1G020790 Rw2G027890 Rw2G028040 Rw3G019240 Rw4G014070 Rw4G020540 Rw5G021320 Rw5G022970 Rw6G016920 Rw7G010020 Rw7G010040 Rw7G010580 Rw7G010590 Rw7G010600 Rw7G010610 Rw7G010620 Rw7G010630 Rw7G010640 Rw7G010690

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 299
AgsI TTSAA 1 cut(s) 295
AjuI GAANNNNNNNTTGG 2 cut(s) 63, 95
AluBI AGCT 2 cut(s) 113, 245
AluI AGCT 2 cut(s) 113, 245
Alw26I GTCTC 1 cut(s) 305
BbsI GAAGAC 1 cut(s) 258
BciVI GTATCC 1 cut(s) 139
BclI TGATCA 1 cut(s) 207
BcoDI GTCTC 1 cut(s) 305
BfaI CTAG 2 cut(s) 164, 351
BfuI GTATCC 1 cut(s) 139
BpiI GAAGAC 1 cut(s) 258
BpmI CTGGAG 1 cut(s) 267
BpuEI CTTGAG 1 cut(s) 77
Bse1I ACTGG 1 cut(s) 16
Bse3DI GCAATG 1 cut(s) 180
BseGI GGATG 3 cut(s) 10, 274, 325
BseMI GCAATG 1 cut(s) 180
BseMII CTCAG 1 cut(s) 171
BseNI ACTGG 1 cut(s) 16
BseYI CCCAGC 1 cut(s) 137
BslFI GGGAC 1 cut(s) 154
BsmAI GTCTC 1 cut(s) 305
BsmFI GGGAC 1 cut(s) 154
Bsp143I GATC 1 cut(s) 207
BspACI CCGC 1 cut(s) 299
BspCNI CTCAG 1 cut(s) 172
BspHI TCATGA 1 cut(s) 204
BsrDI GCAATG 1 cut(s) 180
BsrI ACTGG 1 cut(s) 16
BssMI GATC 1 cut(s) 207
Bst4CI ACNGT 2 cut(s) 358, 390
Bst6I CTCTTC 1 cut(s) 321
BstDEI CTNAG 1 cut(s) 180
BstF5I GGATG 3 cut(s) 10, 274, 325
BstKTI GATC 1 cut(s) 210
BstMAI GTCTC 1 cut(s) 305
BstMBI GATC 1 cut(s) 207
BstV2I GAAGAC 1 cut(s) 258
BsuI GTATCC 1 cut(s) 139
BtsCI GGATG 3 cut(s) 10, 274, 325
BtsI GCAGTG 1 cut(s) 338
BtsIMutI CAGTG 1 cut(s) 338
CciI TCATGA 1 cut(s) 204
CseI GACGC 1 cut(s) 166
CviAII CATG 1 cut(s) 205
CviJI RGCY 3 cut(s) 113, 179, 245
CviKI_1 RGCY 3 cut(s) 113, 179, 245
DdeI CTNAG 1 cut(s) 180
DpnI GATC 1 cut(s) 209
DpnII GATC 1 cut(s) 207
DraI TTTAAA 1 cut(s) 189
Eam1104I CTCTTC 1 cut(s) 321
EarI CTCTTC 1 cut(s) 321
FaeI CATG 1 cut(s) 208
FaiI YATR 5 cut(s) 107, 128, 206, 257, 284
FaqI GGGAC 1 cut(s) 154
FatI CATG 1 cut(s) 204
FbaI TGATCA 1 cut(s) 207
FokI GGATG 3 cut(s) 17, 281, 312
FspBI CTAG 2 cut(s) 164, 351
GsaI CCCAGC 1 cut(s) 141
GsuI CTGGAG 1 cut(s) 267
HgaI GACGC 1 cut(s) 166
Hin1II CATG 1 cut(s) 208
HincII GTYRAC 1 cut(s) 238
HindII GTYRAC 1 cut(s) 238
HinfI GANTC 2 cut(s) 61, 313
HpaI GTTAAC 1 cut(s) 238
Hpy166II GTNNAC 2 cut(s) 46, 238
Hpy188III TCNNGA 2 cut(s) 164, 205
Hpy8I GTNNAC 2 cut(s) 46, 238
Hpy99I CGWCG 1 cut(s) 160
HpyAV CCTTC 2 cut(s) 193, 289
HpyCH4III ACNGT 2 cut(s) 358, 390
HpyCH4IV ACGT 1 cut(s) 48
HpyCH4V TGCA 2 cut(s) 217, 286
HpyF3I CTNAG 1 cut(s) 180
HpySE526I ACGT 1 cut(s) 48
Hsp92II CATG 1 cut(s) 208
Ksp22I TGATCA 1 cut(s) 207
KspAI GTTAAC 1 cut(s) 238
Kzo9I GATC 1 cut(s) 207
LpnPI CCDG 3 cut(s) 53, 123, 231
MaeI CTAG 2 cut(s) 164, 351
MaeII ACGT 1 cut(s) 48
MaeIII GTNAC 3 cut(s) 14, 100, 390
MalI GATC 1 cut(s) 209
MboI GATC 1 cut(s) 207
MboII GAAGA 2 cut(s) 263, 308
MluCI AATT 1 cut(s) 212
MlyI GAGTC 1 cut(s) 307
MnlI CCTC 3 cut(s) 16, 259, 339
MseI TTAA 3 cut(s) 188, 237, 260
NdeII GATC 1 cut(s) 207
NlaIII CATG 1 cut(s) 208
NmuCI GTSAC 1 cut(s) 14
PagI TCATGA 1 cut(s) 204
PfeI GAWTC 1 cut(s) 61
PleI GAGTC 1 cut(s) 307
PpsI GAGTC 1 cut(s) 307
PspFI CCCAGC 1 cut(s) 137
SaqAI TTAA 3 cut(s) 188, 237, 260
Sau3AI GATC 1 cut(s) 207
SchI GAGTC 1 cut(s) 307
SetI ASST 4 cut(s) 51, 115, 204, 247
SmlI CTYRAG 1 cut(s) 56
SmoI CTYRAG 1 cut(s) 56
Sse9I AATT 1 cut(s) 212
SsiI CCGC 1 cut(s) 299
SspMI CTAG 2 cut(s) 164, 351
TaaI ACNGT 2 cut(s) 358, 390
TaiI ACGT 1 cut(s) 51
TasI AATT 1 cut(s) 212
TfiI GAWTC 1 cut(s) 61
Tru1I TTAA 3 cut(s) 188, 237, 260
Tru9I TTAA 3 cut(s) 188, 237, 260
TscAI CASTG 1 cut(s) 345
TseFI GTSAC 1 cut(s) 14
Tsp45I GTSAC 1 cut(s) 14
TspDTI ATGAA 2 cut(s) 45, 237
TspGWI ACGGA 1 cut(s) 158
TspRI CASTG 1 cut(s) 345
XbaI TCTAGA 1 cut(s) 163
XspI CTAG 2 cut(s) 164, 351
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.