Rorug01G0225800

Cytochrome p450

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
Physical Location & Seq
Reverse (-)
32409563 .. 32410384
822 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0225800.1

Sequence Viewer

Length: 687 bp
ATGGCTCTTTTCAGAGGTACAGAAACCTCCCCTTCTAAATATGCTACTTCTCCTTCTGGAACTAGTTATGACGTTTTCTTGAGTTTCAGAGGCGAGGATACTTGCAAGACTTTTACAGATCACCTCTATACGGCCCTTGTCAACGCTGGACTTCATACTTTCCGAGATGACCCTGAACTTGAGAAGGGAGAAAGTGTCAAGGAAAATCTAGAGAAAGCAGTCCAACAATCACAAAGTTCTGTTATTGTGCTTTCAAAAGACTATGCATCTTCCAGGTGGTGTCTTCATGAGCTTGTGACTATCCTTGAACGCAAGAGGACCTCCTGCTGTCACCACATTTTACCAGTCTTCTACAACGTCGATCCATCTCATGTGAGGAAGGAGGCAGAAAATCTTGCAAAAATTCCTAAATACCAGGGAAATCAGTCTTCAGAGAAGTTAAATGAATGGCGGGCAGCACTTACAGAAGTGGCAGATCTAGCAGGCATGGTGCTACAAAACCAAGCTGATAGGCACGAATCAAAGTTCATTCAGAGTATTGTTAAAGTGATTCAAGAAAAGCTAGGTCGTTTTCCCATTAGTGTAGTCAAGGAGGTATTAATGAAGAAGTTGTTTTTTAGTAACACTGTTCTGGATGACAGAGAGGGAAAGCAACTTAATAACCCAATTGTAAAGGACTGGCTATGA

Protein Analysis

228

Amino Acids

25.94

Weight (kDa)

7.05

Isoelectric Point (pI)

47.12

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TIR PF01582 23 - 192 7.4e-43 TIR domain
TIR_2 PF13676 25 - 122 2.1e-16 TIR domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000061)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G48270 AT3G48280 AT3G48290 AT3G48290 AT3G48300 AT3G48300 AT3G48310 AT3G48320 AT4G20235 AT4G20235
fragaria_vesca FvH4_2g12910 FvH4_2g12910 FvH4_2g12910 FvH4_2g12910 FvH4_2g12910 FvH4_2g36190 FvH4_3g14160 FvH4_3g14210 FvH4_3g14260 FvH4_3g14260 FvH4_3g21100 FvH4_3g21380 FvH4_4g24460 FvH4_4g24500 FvH4_5g06571 FvH4_5g06571 FvH4_5g06571 FvH4_5g06571 FvH4_5g06572 FvH4_5g06573 FvH4_5g06574 FvH4_5g06575 FvH4_5g06576 FvH4_5g06577 FvH4_5g06577 FvH4_5g07540 FvH4_5g07550 FvH4_5g07560 FvH4_5g07570 FvH4_5g29491 FvH4_5g29492 FvH4_6g23870 FvH4_6g23880 FvH4_6g26870 FvH4_7g11861 FvH4_7g11862 FvH4_7g13050 FvH4_7g13060 FvH4_7g13080 FvH4_7g13080 FvH4_7g22630 FvH4_7g22650 FvH4_7g22651 FvH4_7g23020
malus_domestica MD03G1207400.v1.1 MD03G1214800.v1.1 MD03G1218500.v1.1 MD06G1163100.v1.1 MD06G1163300.v1.1 MD06G1163400.v1.1 MD06G1163500.v1.1 MD06G1163600.v1.1 MD06G1163800.v1.1 MD06G1164000.v1.1 MD06G1164100.v1.1 MD06G1224400.v1.1 MD08G1222800.v1.1 MD08G1222900.v1.1 MD08G1223100.v1.1 MD11G1091500.v1.1 MD11G1091800.v1.1 MD14G1163200.v1.1 MD14G1169000.v1.1 MD15G1207200.v1.1 MD15G1207300.v1.1 MD17G1259400.v1.1
prunus_persica Prupe.4G198100_v2.0.a1 Prupe.4G199100_v2.0.a1 Prupe.4G199400_v2.0.a1 Prupe.4G199800_v2.0.a1 Prupe.4G225200_v2.0.a1 Prupe.4G239100_v2.0.a1 Prupe.5G156600_v2.0.a1 Prupe.5G163500_v2.0.a1 Prupe.7G209500_v2.0.a1 Prupe.I003400_v2.0.a1
pyrus_communis pycom03g16340 pycom06g14600 pycom06g14610 pycom06g14620 pycom06g14630 pycom06g14640 pycom06g14670 pycom06g14690 pycom08g19390 pycom08g19400 pycom08g19410 pycom11g07600 pycom11g07610 pycom11g07620 pycom11g07660 pycom14g13580 pycom14g14080 pycom14g14100 pycom14g14110 pycom15g18380 pycom17g26080
rosa_chinensis RchiOBHm_Chr1g0339441 RchiOBHm_Chr1g0339451 RchiOBHm_Chr1g0352191 RchiOBHm_Chr1g0368221 RchiOBHm_Chr2g0129531 RchiOBHm_Chr2g0129541 RchiOBHm_Chr3g0477631 RchiOBHm_Chr3g0482551 RchiOBHm_Chr3g0482561 RchiOBHm_Chr3g0482571 RchiOBHm_Chr4g0411601 RchiOBHm_Chr4g0422181 RchiOBHm_Chr5g0036661 RchiOBHm_Chr5g0036731 RchiOBHm_Chr6g0274021 RchiOBHm_Chr7g0190921 RchiOBHm_Chr7g0190931 RchiOBHm_Chr7g0190941 RchiOBHm_Chr7g0190951 RchiOBHm_Chr7g0190961 RchiOBHm_Chr7g0190971 RchiOBHm_Chr7g0191001 RchiOBHm_Chr7g0191011 RchiOBHm_Chr7g0191021 RchiOBHm_Chr7g0192181 RchiOBHm_Chr7g0192191 RchiOBHm_Chr7g0192201 RchiOBHm_Chr7g0192221 RchiOBHm_Chr7g0192231 RchiOBHm_Chr7g0192281 RchiOBHm_Chr7g0197311
rosa_laevigata RLG00000003942 RLG00000004345 RLG00000004379 RLG00000004383 RLG00000004384 RLG00000004385 RLG00000004387 RLG00000004388 RLG00000004389 RLG00000004480 RLG00000004481 RLG00000004482 RLG00000004483 RLG00000004485 RLG00000008342 RLG00000008401 RLG00000013583 RLG00000017044 RLG00000027229 RLG00000028349 RLG00000028350 RLG00000028353 RLG00000028820 RLG00000033707 RLG00000033710
rosa_multiflora Rmu_co8020340.1_g000001 Rmu_co8096640.1_g000001 Rmu_co8214930.1_g000001 Rmu_co8223272.1_g000001 Rmu_co8282535.1_g000001 Rmu_co8343567.1_g000001 Rmu_co8404191.1_g000001 Rmu_co8455157.1_g000001 Rmu_sc0000062.1_g000028 Rmu_sc0000082.1_g000091 Rmu_sc0000509.1_g000017 Rmu_sc0000775.1_g000001 Rmu_sc0000999.1_g000034 Rmu_sc0001559.1_g000004 Rmu_sc0001559.1_g000009 Rmu_sc0002164.1_g000001 Rmu_sc0002164.1_g000005 Rmu_sc0002164.1_g000007 Rmu_sc0002164.1_g000008 Rmu_sc0002164.1_g000009 Rmu_sc0002164.1_g000019 Rmu_sc0002247.1_g000009 Rmu_sc0002373.1_g000002 Rmu_sc0002373.1_g000003 Rmu_sc0002944.1_g000059 Rmu_sc0003930.1_g000004 Rmu_sc0004958.1_g000001 Rmu_sc0005197.1_g000014 Rmu_sc0005898.1_g000008 Rmu_sc0005898.1_g000009 Rmu_sc0005898.1_g000015 Rmu_sc0006059.1_g000004 Rmu_sc0006059.1_g000010 Rmu_sc0006903.1_g000007 Rmu_sc0006903.1_g000008 Rmu_sc0006968.1_g000001 Rmu_sc0011009.1_g000009 Rmu_sc0022852.1_g000002 Rmu_sc0033854.1_g000001 Rmu_ssc0000421.1_g000057 Rmu_ssc0000421.1_g000067 Rmu_ssc0000421.1_g000069 Rmu_ssc0000421.1_g000072 Rmu_ssc0000421.1_g000081 Rmu_ssc0000421.1_g000086
rosa_roxburghii Rroxscaffold_158G00443680 Rroxscaffold_158G00443710 Rroxscaffold_158G00443720 Rroxscaffold_158G00443740 Rroxscaffold_1G00034950 Rroxscaffold_1G00044240 Rroxscaffold_1G00044270 Rroxscaffold_3G00241380 Rroxscaffold_3G00247000 Rroxscaffold_3G00263120 Rroxscaffold_3G00263150 Rroxscaffold_3G00263160 Rroxscaffold_3G00263170 Rroxscaffold_3G00263180 Rroxscaffold_3G00263190 Rroxscaffold_3G00263210 Rroxscaffold_3G00263230 Rroxscaffold_3G00263260 Rroxscaffold_3G00264110 Rroxscaffold_3G00264130 Rroxscaffold_3G00264160 Rroxscaffold_3G00264180 Rroxscaffold_3G00264200 Rroxscaffold_4G00288750 Rroxscaffold_4G00303110 Rroxscaffold_4G00303120 Rroxscaffold_4G00322280 Rroxscaffold_5G00356200 Rroxscaffold_6G00399150 Rroxscaffold_6G00399290 Rroxscaffold_7G00194770
rosa_rugosa Rorug01G0225300 Rorug01G0225400 Rorug01G0225800 Rorug01G0226000 Rorug01G0339400 Rorug01G0451500 Rorug03G0196900 Rorug03G0294900 Rorug04G0107500 Rorug04G0107600 Rorug04G0129700 Rorug04G0178000 Rorug05G0144900.1 Rorug05G0145000 Rorug05G0228000 Rorug05G0228600 Rorug06G0078300 Rorug06G0508000 Rorug06G0508100 Rorug06G0508100 Rorug06G0508400 Rorug06G0513400 Rorug07G0000100 Rorug07G0000200 Rorug07G0000300 Rorug07G0000500 Rorug07G0000800
rosa_samantha Rh1BG060400 Rh1BG210300 Rh1BG210700 Rh1BG210800 Rh1BG309800 Rh1CG223800 Rh1CG224200 Rh1CG325200 Rh1DG237000 Rh1DG237400 Rh1DG341600 Rh2DG365700 Rh3AG212500 Rh3AG248400 Rh3CG239800 Rh3DG239300 Rh4AG169300 Rh4BG166200 Rh4BG240500 Rh4BG240600 Rh4DG163600 Rh5AG249600 Rh5AG249900 Rh5AG250000 Rh5CG283100 Rh5CG283200 Rh5CG283400 Rh5DG259200 Rh5DG259800 Rh6BG197700 Rh6CG197800 Rh6DG189400 Rh7AG114900 Rh7AG115000 Rh7AG115200 Rh7AG115300 Rh7AG115400 Rh7AG115500 Rh7AG123900 Rh7AG124100 Rh7AG124300 Rh7BG117200 Rh7BG117400 Rh7BG118400 Rh7BG125400 Rh7BG125600 Rh7BG125700 Rh7BG125800 Rh7BG125900 Rh7BG126000 Rh7BG126400 Rh7BG126600 Rh7BG126700 Rh7BG166200 Rh7DG118600 Rh7DG118700 Rh7DG118900 Rh7DG119000 Rh7DG119100 Rh7DG127400 Rh7DG127600 Rh7DG127700 Rh7DG127900 Rh7DG128200
rosa_wichuraiana Rw1G013270 Rw1G020790 Rw2G027890 Rw2G028040 Rw3G019240 Rw4G014070 Rw4G020540 Rw5G021320 Rw5G022970 Rw6G016920 Rw7G010020 Rw7G010040 Rw7G010580 Rw7G010590 Rw7G010600 Rw7G010610 Rw7G010620 Rw7G010630 Rw7G010640 Rw7G010690

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 451
AclWI GGATC 1 cut(s) 356
AcsI RAATTY 1 cut(s) 402
AcuI CTGAAG 1 cut(s) 414
AfaI GTAC 1 cut(s) 19
AfiI CCNNNNNNNGG 1 cut(s) 130
AgsI TTSAA 3 cut(s) 255, 308, 554
AhlI ACTAGT 1 cut(s) 62
AjnI CCWGG 2 cut(s) 272, 414
AluBI AGCT 3 cut(s) 292, 506, 562
AluI AGCT 3 cut(s) 292, 506, 562
AlwI GGATC 1 cut(s) 356
AoxI GGCC 1 cut(s) 132
ApeKI GCWGC 1 cut(s) 455
ApoI RAATTY 1 cut(s) 402
AseI ATTAAT 1 cut(s) 599
AspS9I GGNCC 2 cut(s) 133, 318
AsuHPI GGTGA 2 cut(s) 113, 323
AvaII GGWCC 1 cut(s) 318
BbsI GAAGAC 3 cut(s) 275, 340, 420
BbvI GCAGC 1 cut(s) 467
BccI CCATC 1 cut(s) 373
BceAI ACGGC 1 cut(s) 147
BciT130I CCWGG 2 cut(s) 274, 416
BciVI GTATCC 1 cut(s) 91
BcuI ACTAGT 1 cut(s) 62
BfaI CTAG 4 cut(s) 63, 209, 479, 563
BfuI GTATCC 1 cut(s) 91
BglII AGATCT 1 cut(s) 475
BisI GCNGC 1 cut(s) 456
BlsI GCNGC 1 cut(s) 457
Bme1390I CCNGG 2 cut(s) 274, 416
Bme18I GGWCC 1 cut(s) 318
BmgT120I GGNCC 2 cut(s) 133, 318
BmrFI CCNGG 2 cut(s) 274, 416
BmsI GCATC 1 cut(s) 275
BpiI GAAGAC 3 cut(s) 275, 340, 420
BpuEI CTTGAG 2 cut(s) 100, 200
BsaJI CCNNGG 1 cut(s) 415
BsaXI ACNNNNNCTCC 2 cut(s) 180, 210
Bsc4I CCNNNNNNNGG 1 cut(s) 130
Bse1I ACTGG 2 cut(s) 344, 683
BseBI CCWGG 2 cut(s) 274, 416
BseDI CCNNGG 1 cut(s) 415
BseGI GGATG 1 cut(s) 640
BseLI CCNNNNNNNGG 1 cut(s) 130
BseNI ACTGG 2 cut(s) 344, 683
BseXI GCAGC 1 cut(s) 467
BshFI GGCC 1 cut(s) 134
BslI CCNNNNNNNGG 1 cut(s) 130
BsnI GGCC 1 cut(s) 134
Bsp143I GATC 3 cut(s) 118, 361, 475
BspACI CCGC 1 cut(s) 451
BspANI GGCC 1 cut(s) 134
BspHI TCATGA 1 cut(s) 286
BspPI GGATC 1 cut(s) 356
BsrI ACTGG 2 cut(s) 344, 683
BssECI CCNNGG 1 cut(s) 415
BssMI GATC 3 cut(s) 118, 361, 475
Bst2UI CCWGG 2 cut(s) 274, 416
Bst4CI ACNGT 1 cut(s) 628
BstC8I GCNNGC 2 cut(s) 453, 484
BstF5I GGATG 1 cut(s) 640
BstKTI GATC 3 cut(s) 121, 364, 478
BstMBI GATC 3 cut(s) 118, 361, 475
BstMWI GCNNNNNNNGC 1 cut(s) 479
BstNI CCWGG 2 cut(s) 274, 416
BstSCI CCNGG 2 cut(s) 272, 414
BstV1I GCAGC 1 cut(s) 467
BstV2I GAAGAC 3 cut(s) 275, 340, 420
BstX2I RGATCY 1 cut(s) 475
BstYI RGATCY 1 cut(s) 475
BsuI GTATCC 1 cut(s) 91
BsuRI GGCC 1 cut(s) 134
BtsCI GGATG 1 cut(s) 640
BtsIMutI CAGTG 1 cut(s) 624
Cac8I GCNNGC 2 cut(s) 453, 484
CciI TCATGA 1 cut(s) 286
Cfr13I GGNCC 2 cut(s) 133, 318
Csp6I GTAC 1 cut(s) 18
CviAII CATG 3 cut(s) 287, 371, 487
CviJI RGCY 6 cut(s) 5, 134, 292, 506, 562, 682
CviKI_1 RGCY 6 cut(s) 5, 134, 292, 506, 562, 682
CviQI GTAC 1 cut(s) 18
DpnI GATC 3 cut(s) 120, 363, 477
DpnII GATC 3 cut(s) 118, 361, 475
Eco47I GGWCC 1 cut(s) 318
Eco57I CTGAAG 1 cut(s) 414
EcoO109I RGGNCCY 1 cut(s) 318
EcoRII CCWGG 2 cut(s) 272, 414
EcoT22I ATGCAT 1 cut(s) 268
FaeI CATG 3 cut(s) 290, 374, 490
FaiI YATR 9 cut(s) 42, 69, 129, 156, 264, 288, 372, 488, 685
FatI CATG 3 cut(s) 286, 370, 486
FauI CCCGC 1 cut(s) 444
Fnu4HI GCNGC 1 cut(s) 456
FokI GGATG 1 cut(s) 647
Fsp4HI GCNGC 1 cut(s) 456
FspBI CTAG 4 cut(s) 63, 209, 479, 563
GluI GCNGC 1 cut(s) 456
HaeIII GGCC 1 cut(s) 134
Hin1II CATG 3 cut(s) 290, 374, 490
HincII GTYRAC 1 cut(s) 142
HindII GTYRAC 1 cut(s) 142
HinfI GANTC 2 cut(s) 518, 550
HphI GGTGA 2 cut(s) 113, 323
Hpy166II GTNNAC 1 cut(s) 142
Hpy188I TCNGA 5 cut(s) 14, 89, 164, 433, 534
Hpy188III TCNNGA 6 cut(s) 57, 79, 209, 287, 554, 632
Hpy8I GTNNAC 1 cut(s) 142
Hpy99I CGWCG 1 cut(s) 362
HpyAV CCTTC 4 cut(s) 42, 63, 178, 373
HpyCH4III ACNGT 1 cut(s) 628
HpyCH4IV ACGT 2 cut(s) 72, 357
HpyCH4V TGCA 3 cut(s) 105, 266, 398
HpyF10VI GCNNNNNNNGC 1 cut(s) 479
HpySE526I ACGT 2 cut(s) 72, 357
Hsp92II CATG 3 cut(s) 290, 374, 490
Kzo9I GATC 3 cut(s) 118, 361, 475
Lsp1109I GCAGC 1 cut(s) 467
LweI GCATC 1 cut(s) 275
MaeI CTAG 4 cut(s) 63, 209, 479, 563
MaeII ACGT 2 cut(s) 72, 357
MaeIII GTNAC 3 cut(s) 295, 329, 620
MalI GATC 3 cut(s) 120, 363, 477
MboI GATC 3 cut(s) 118, 361, 475
MboII GAAGA 5 cut(s) 261, 275, 340, 420, 616
MfeI CAATTG 1 cut(s) 666
MflI RGATCY 1 cut(s) 475
MluCI AATT 2 cut(s) 402, 666
MmeI TCCRAC 1 cut(s) 247
Mph1103I ATGCAT 1 cut(s) 268
MseI TTAA 4 cut(s) 440, 543, 599, 657
MspR9I CCNGG 2 cut(s) 274, 416
MunI CAATTG 1 cut(s) 666
MvaI CCWGG 2 cut(s) 274, 416
MwoI GCNNNNNNNGC 1 cut(s) 479
NdeII GATC 3 cut(s) 118, 361, 475
NlaIII CATG 3 cut(s) 290, 374, 490
NmuCI GTSAC 2 cut(s) 295, 329
NsiI ATGCAT 1 cut(s) 268
PagI TCATGA 1 cut(s) 286
PfeI GAWTC 2 cut(s) 518, 550
PkrI GCNGC 1 cut(s) 457
PpuMI RGGWCCY 1 cut(s) 318
PshBI ATTAAT 1 cut(s) 599
Psp5II RGGWCCY 1 cut(s) 318
Psp6I CCWGG 2 cut(s) 272, 414
PspGI CCWGG 2 cut(s) 272, 414
PspPI GGNCC 2 cut(s) 133, 318
PspPPI RGGWCCY 1 cut(s) 318
PsuI RGATCY 1 cut(s) 475
RsaI GTAC 1 cut(s) 19
RsaNI GTAC 1 cut(s) 18
SaqAI TTAA 4 cut(s) 440, 543, 599, 657
SatI GCNGC 1 cut(s) 456
Sau3AI GATC 3 cut(s) 118, 361, 475
Sau96I GGNCC 2 cut(s) 133, 318
ScrFI CCNGG 2 cut(s) 274, 416
SfaNI GCATC 1 cut(s) 275
SinI GGWCC 1 cut(s) 318
SmlI CTYRAG 2 cut(s) 79, 179
SmoI CTYRAG 2 cut(s) 79, 179
SpeI ACTAGT 1 cut(s) 62
Sse9I AATT 2 cut(s) 402, 666
SsiI CCGC 1 cut(s) 451
SspMI CTAG 4 cut(s) 63, 209, 479, 563
StyD4I CCNGG 2 cut(s) 272, 414
TaaI ACNGT 1 cut(s) 628
TaiI ACGT 2 cut(s) 75, 360
TaqI TCGA 1 cut(s) 360
TasI AATT 2 cut(s) 402, 666
TfiI GAWTC 2 cut(s) 518, 550
Tru1I TTAA 4 cut(s) 440, 543, 599, 657
Tru9I TTAA 4 cut(s) 440, 543, 599, 657
TscAI CASTG 1 cut(s) 631
TseFI GTSAC 2 cut(s) 295, 329
TseI GCWGC 1 cut(s) 455
Tsp45I GTSAC 2 cut(s) 295, 329
TspDTI ATGAA 5 cut(s) 143, 275, 459, 517, 617
TspRI CASTG 1 cut(s) 631
VpaK11BI GGWCC 1 cut(s) 318
VspI ATTAAT 1 cut(s) 599
XapI RAATTY 1 cut(s) 402
XbaI TCTAGA 1 cut(s) 208
XspI CTAG 4 cut(s) 63, 209, 479, 563
Zsp2I ATGCAT 1 cut(s) 268
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.