FvH4_5g29492

Cytochrome p450

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
Physical Location & Seq
Forward (+)
20459158 .. 20459733
576 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g29492.t1

Sequence Viewer

Length: 576 bp
ATGTCGGAGCTTTTCAAGCATCCAAGTGTTATGAAGAAATTACAAAATGAGGTTAGAGGAATAGTCGGAAATAAGCAAAACATAATAACAGAGGATGATTTGGGTGGAATGAACTATTTGAAGGCAGTAATCAAAGAGACTCTTCGCTTGCATCCTCCAGCTCCATTACTATTTCCCAGGATGGCTAGCCAAGATGCAACGGTAAATGGTTACAATATCAAGCGCGGCACACTAGTTTTTGTTAATGCATGGAAGATTGGAAGGGATCCAAAGTCATACAACGACCCAGAAGAGTTTAAACCAGAAAGGTTTTTGAGTAATGTCGTAGATTATAGAGGGACCGATGATTTCCAATTTATTCCATTTGGGGCTGGCAGAAGGGGTTGTCCAGGAATTCAGTTTGCCATGGCTGTTCAGGAGATTGCTTTAGCAAATTTGATTCACAAGTTTGATTGGGTATTGCCTTATGGTGCAAGAGGGGAGGATTTAGACATGACTGAGGAGAGTAATAGTTCAACTATACATAGAAAATATCTTCTTAAGGCCATGGCTATACCATATCATTGCTCAGGTTAA

Protein Analysis

192

Amino Acids

21.6

Weight (kDa)

8.48

Isoelectric Point (pI)

40.17

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 3 - 170 3.3e-56 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000061)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G48270 AT3G48280 AT3G48290 AT3G48290 AT3G48300 AT3G48300 AT3G48310 AT3G48320 AT4G20235 AT4G20235
fragaria_vesca FvH4_2g12910 FvH4_2g12910 FvH4_2g12910 FvH4_2g12910 FvH4_2g12910 FvH4_2g36190 FvH4_3g14160 FvH4_3g14210 FvH4_3g14260 FvH4_3g14260 FvH4_3g21100 FvH4_3g21380 FvH4_4g24460 FvH4_4g24500 FvH4_5g06571 FvH4_5g06571 FvH4_5g06571 FvH4_5g06571 FvH4_5g06572 FvH4_5g06573 FvH4_5g06574 FvH4_5g06575 FvH4_5g06576 FvH4_5g06577 FvH4_5g06577 FvH4_5g07540 FvH4_5g07550 FvH4_5g07560 FvH4_5g07570 FvH4_5g29491 FvH4_5g29492 FvH4_6g23870 FvH4_6g23880 FvH4_6g26870 FvH4_7g11861 FvH4_7g11862 FvH4_7g13050 FvH4_7g13060 FvH4_7g13080 FvH4_7g13080 FvH4_7g22630 FvH4_7g22650 FvH4_7g22651 FvH4_7g23020
malus_domestica MD03G1207400.v1.1 MD03G1214800.v1.1 MD03G1218500.v1.1 MD06G1163100.v1.1 MD06G1163300.v1.1 MD06G1163400.v1.1 MD06G1163500.v1.1 MD06G1163600.v1.1 MD06G1163800.v1.1 MD06G1164000.v1.1 MD06G1164100.v1.1 MD06G1224400.v1.1 MD08G1222800.v1.1 MD08G1222900.v1.1 MD08G1223100.v1.1 MD11G1091500.v1.1 MD11G1091800.v1.1 MD14G1163200.v1.1 MD14G1169000.v1.1 MD15G1207200.v1.1 MD15G1207300.v1.1 MD17G1259400.v1.1
prunus_persica Prupe.4G198100_v2.0.a1 Prupe.4G199100_v2.0.a1 Prupe.4G199400_v2.0.a1 Prupe.4G199800_v2.0.a1 Prupe.4G225200_v2.0.a1 Prupe.4G239100_v2.0.a1 Prupe.5G156600_v2.0.a1 Prupe.5G163500_v2.0.a1 Prupe.7G209500_v2.0.a1 Prupe.I003400_v2.0.a1
pyrus_communis pycom03g16340 pycom06g14600 pycom06g14610 pycom06g14620 pycom06g14630 pycom06g14640 pycom06g14670 pycom06g14690 pycom08g19390 pycom08g19400 pycom08g19410 pycom11g07600 pycom11g07610 pycom11g07620 pycom11g07660 pycom14g13580 pycom14g14080 pycom14g14100 pycom14g14110 pycom15g18380 pycom17g26080
rosa_chinensis RchiOBHm_Chr1g0339441 RchiOBHm_Chr1g0339451 RchiOBHm_Chr1g0352191 RchiOBHm_Chr1g0368221 RchiOBHm_Chr2g0129531 RchiOBHm_Chr2g0129541 RchiOBHm_Chr3g0477631 RchiOBHm_Chr3g0482551 RchiOBHm_Chr3g0482561 RchiOBHm_Chr3g0482571 RchiOBHm_Chr4g0411601 RchiOBHm_Chr4g0422181 RchiOBHm_Chr5g0036661 RchiOBHm_Chr5g0036731 RchiOBHm_Chr6g0274021 RchiOBHm_Chr7g0190921 RchiOBHm_Chr7g0190931 RchiOBHm_Chr7g0190941 RchiOBHm_Chr7g0190951 RchiOBHm_Chr7g0190961 RchiOBHm_Chr7g0190971 RchiOBHm_Chr7g0191001 RchiOBHm_Chr7g0191011 RchiOBHm_Chr7g0191021 RchiOBHm_Chr7g0192181 RchiOBHm_Chr7g0192191 RchiOBHm_Chr7g0192201 RchiOBHm_Chr7g0192221 RchiOBHm_Chr7g0192231 RchiOBHm_Chr7g0192281 RchiOBHm_Chr7g0197311
rosa_laevigata RLG00000003942 RLG00000004345 RLG00000004379 RLG00000004383 RLG00000004384 RLG00000004385 RLG00000004387 RLG00000004388 RLG00000004389 RLG00000004480 RLG00000004481 RLG00000004482 RLG00000004483 RLG00000004485 RLG00000008342 RLG00000008401 RLG00000013583 RLG00000017044 RLG00000027229 RLG00000028349 RLG00000028350 RLG00000028353 RLG00000028820 RLG00000033707 RLG00000033710
rosa_multiflora Rmu_co8020340.1_g000001 Rmu_co8096640.1_g000001 Rmu_co8214930.1_g000001 Rmu_co8223272.1_g000001 Rmu_co8282535.1_g000001 Rmu_co8343567.1_g000001 Rmu_co8404191.1_g000001 Rmu_co8455157.1_g000001 Rmu_sc0000062.1_g000028 Rmu_sc0000082.1_g000091 Rmu_sc0000509.1_g000017 Rmu_sc0000775.1_g000001 Rmu_sc0000999.1_g000034 Rmu_sc0001559.1_g000004 Rmu_sc0001559.1_g000009 Rmu_sc0002164.1_g000001 Rmu_sc0002164.1_g000005 Rmu_sc0002164.1_g000007 Rmu_sc0002164.1_g000008 Rmu_sc0002164.1_g000009 Rmu_sc0002164.1_g000019 Rmu_sc0002247.1_g000009 Rmu_sc0002373.1_g000002 Rmu_sc0002373.1_g000003 Rmu_sc0002944.1_g000059 Rmu_sc0003930.1_g000004 Rmu_sc0004958.1_g000001 Rmu_sc0005197.1_g000014 Rmu_sc0005898.1_g000008 Rmu_sc0005898.1_g000009 Rmu_sc0005898.1_g000015 Rmu_sc0006059.1_g000004 Rmu_sc0006059.1_g000010 Rmu_sc0006903.1_g000007 Rmu_sc0006903.1_g000008 Rmu_sc0006968.1_g000001 Rmu_sc0011009.1_g000009 Rmu_sc0022852.1_g000002 Rmu_sc0033854.1_g000001 Rmu_ssc0000421.1_g000057 Rmu_ssc0000421.1_g000067 Rmu_ssc0000421.1_g000069 Rmu_ssc0000421.1_g000072 Rmu_ssc0000421.1_g000081 Rmu_ssc0000421.1_g000086
rosa_roxburghii Rroxscaffold_158G00443680 Rroxscaffold_158G00443710 Rroxscaffold_158G00443720 Rroxscaffold_158G00443740 Rroxscaffold_1G00034950 Rroxscaffold_1G00044240 Rroxscaffold_1G00044270 Rroxscaffold_3G00241380 Rroxscaffold_3G00247000 Rroxscaffold_3G00263120 Rroxscaffold_3G00263150 Rroxscaffold_3G00263160 Rroxscaffold_3G00263170 Rroxscaffold_3G00263180 Rroxscaffold_3G00263190 Rroxscaffold_3G00263210 Rroxscaffold_3G00263230 Rroxscaffold_3G00263260 Rroxscaffold_3G00264110 Rroxscaffold_3G00264130 Rroxscaffold_3G00264160 Rroxscaffold_3G00264180 Rroxscaffold_3G00264200 Rroxscaffold_4G00288750 Rroxscaffold_4G00303110 Rroxscaffold_4G00303120 Rroxscaffold_4G00322280 Rroxscaffold_5G00356200 Rroxscaffold_6G00399150 Rroxscaffold_6G00399290 Rroxscaffold_7G00194770
rosa_rugosa Rorug01G0225300 Rorug01G0225400 Rorug01G0225800 Rorug01G0226000 Rorug01G0339400 Rorug01G0451500 Rorug03G0196900 Rorug03G0294900 Rorug04G0107500 Rorug04G0107600 Rorug04G0129700 Rorug04G0178000 Rorug05G0144900.1 Rorug05G0145000 Rorug05G0228000 Rorug05G0228600 Rorug06G0078300 Rorug06G0508000 Rorug06G0508100 Rorug06G0508100 Rorug06G0508400 Rorug06G0513400 Rorug07G0000100 Rorug07G0000200 Rorug07G0000300 Rorug07G0000500 Rorug07G0000800
rosa_samantha Rh1BG060400 Rh1BG210300 Rh1BG210700 Rh1BG210800 Rh1BG309800 Rh1CG223800 Rh1CG224200 Rh1CG325200 Rh1DG237000 Rh1DG237400 Rh1DG341600 Rh2DG365700 Rh3AG212500 Rh3AG248400 Rh3CG239800 Rh3DG239300 Rh4AG169300 Rh4BG166200 Rh4BG240500 Rh4BG240600 Rh4DG163600 Rh5AG249600 Rh5AG249900 Rh5AG250000 Rh5CG283100 Rh5CG283200 Rh5CG283400 Rh5DG259200 Rh5DG259800 Rh6BG197700 Rh6CG197800 Rh6DG189400 Rh7AG114900 Rh7AG115000 Rh7AG115200 Rh7AG115300 Rh7AG115400 Rh7AG115500 Rh7AG123900 Rh7AG124100 Rh7AG124300 Rh7BG117200 Rh7BG117400 Rh7BG118400 Rh7BG125400 Rh7BG125600 Rh7BG125700 Rh7BG125800 Rh7BG125900 Rh7BG126000 Rh7BG126400 Rh7BG126600 Rh7BG126700 Rh7BG166200 Rh7DG118600 Rh7DG118700 Rh7DG118900 Rh7DG119000 Rh7DG119100 Rh7DG127400 Rh7DG127600 Rh7DG127700 Rh7DG127900 Rh7DG128200
rosa_wichuraiana Rw1G013270 Rw1G020790 Rw2G027890 Rw2G028040 Rw3G019240 Rw4G014070 Rw4G020540 Rw5G021320 Rw5G022970 Rw6G016920 Rw7G010020 Rw7G010040 Rw7G010580 Rw7G010590 Rw7G010600 Rw7G010610 Rw7G010620 Rw7G010630 Rw7G010640 Rw7G010690

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 225
AciI CCGC 1 cut(s) 225
AclWI GGATC 2 cut(s) 260, 273
AcsI RAATTY 2 cut(s) 393, 433
AflII CTTAAG 1 cut(s) 539
AgsI TTSAA 3 cut(s) 16, 121, 516
AhlI ACTAGT 1 cut(s) 232
AjnI CCWGG 2 cut(s) 176, 388
AluBI AGCT 2 cut(s) 10, 161
AluI AGCT 2 cut(s) 10, 161
Alw26I GTCTC 1 cut(s) 131
AlwI GGATC 2 cut(s) 260, 273
AoxI GGCC 1 cut(s) 543
ApoI RAATTY 2 cut(s) 393, 433
AspLEI GCGC 1 cut(s) 225
AspS9I GGNCC 1 cut(s) 339
AsuNHI GCTAGC 1 cut(s) 185
AvaII GGWCC 1 cut(s) 339
BamHI GGATCC 1 cut(s) 265
BccI CCATC 1 cut(s) 175
BciT130I CCWGG 2 cut(s) 178, 390
BcoDI GTCTC 1 cut(s) 131
BcuI ACTAGT 1 cut(s) 232
BfaI CTAG 2 cut(s) 186, 233
BfrI CTTAAG 1 cut(s) 539
BisI GCNGC 1 cut(s) 226
BlsI GCNGC 1 cut(s) 227
Bme1390I CCNGG 2 cut(s) 178, 390
Bme18I GGWCC 1 cut(s) 339
BmgT120I GGNCC 1 cut(s) 339
BmiI GGNNCC 2 cut(s) 267, 340
BmrFI CCNGG 2 cut(s) 178, 390
BmsI GCATC 3 cut(s) 28, 160, 184
BmtI GCTAGC 1 cut(s) 189
BpmI CTGGAG 1 cut(s) 141
Bpu10I CCTNAGC 1 cut(s) 568
BsaJI CCNNGG 3 cut(s) 176, 405, 546
Bse3DI GCAATG 1 cut(s) 562
BseBI CCWGG 2 cut(s) 178, 390
BseDI CCNNGG 3 cut(s) 176, 405, 546
BseGI GGATG 4 cut(s) 19, 100, 151, 186
BseMI GCAATG 1 cut(s) 562
BseMII CTCAG 1 cut(s) 489
BseRI GAGGAG 1 cut(s) 515
Bsh1236I CGCG 1 cut(s) 225
BshFI GGCC 1 cut(s) 545
BslFI GGGAC 1 cut(s) 352
BsmAI GTCTC 1 cut(s) 131
BsmFI GGGAC 1 cut(s) 352
BsnI GGCC 1 cut(s) 545
Bsp143I GATC 1 cut(s) 265
Bsp19I CCATGG 2 cut(s) 405, 546
BspACI CCGC 1 cut(s) 225
BspANI GGCC 1 cut(s) 545
BspCNI CTCAG 1 cut(s) 490
BspFNI CGCG 1 cut(s) 225
BspLI GGNNCC 2 cut(s) 267, 340
BspOI GCTAGC 1 cut(s) 189
BspPI GGATC 2 cut(s) 260, 273
BspTI CTTAAG 1 cut(s) 539
BsrDI GCAATG 1 cut(s) 562
BssECI CCNNGG 3 cut(s) 176, 405, 546
BssMI GATC 1 cut(s) 265
BssT1I CCWWGG 2 cut(s) 405, 546
Bst2UI CCWGG 2 cut(s) 178, 390
Bst4CI ACNGT 1 cut(s) 202
Bst6I CTCTTC 2 cut(s) 147, 285
BstAFI CTTAAG 1 cut(s) 539
BstC8I GCNNGC 3 cut(s) 149, 187, 373
BstDEI CTNAG 2 cut(s) 498, 568
BstDSI CCRYGG 2 cut(s) 405, 546
BstF5I GGATG 4 cut(s) 19, 100, 151, 186
BstFNI CGCG 1 cut(s) 225
BstHHI GCGC 1 cut(s) 225
BstKTI GATC 1 cut(s) 268
BstMAI GTCTC 1 cut(s) 131
BstMBI GATC 1 cut(s) 265
BstMWI GCNNNNNNNGC 1 cut(s) 16
BstNI CCWGG 2 cut(s) 178, 390
BstSCI CCNGG 2 cut(s) 176, 388
BstUI CGCG 1 cut(s) 225
BstX2I RGATCY 1 cut(s) 265
BstYI RGATCY 1 cut(s) 265
BsuRI GGCC 1 cut(s) 545
BtgI CCRYGG 2 cut(s) 405, 546
BtsCI GGATG 4 cut(s) 19, 100, 151, 186
Cac8I GCNNGC 3 cut(s) 149, 187, 373
CfoI GCGC 1 cut(s) 225
Cfr13I GGNCC 1 cut(s) 339
CviAII CATG 4 cut(s) 249, 406, 493, 547
CviJI RGCY 8 cut(s) 10, 161, 185, 189, 371, 410, 545, 551
CviKI_1 RGCY 8 cut(s) 10, 161, 185, 189, 371, 410, 545, 551
DdeI CTNAG 2 cut(s) 498, 568
DpnI GATC 1 cut(s) 267
DpnII GATC 1 cut(s) 265
DraI TTTAAA 1 cut(s) 298
Eam1104I CTCTTC 2 cut(s) 147, 285
EarI CTCTTC 2 cut(s) 147, 285
Eco130I CCWWGG 2 cut(s) 405, 546
Eco47I GGWCC 1 cut(s) 339
EcoRI GAATTC 1 cut(s) 393
EcoRII CCWGG 2 cut(s) 176, 388
EcoT14I CCWWGG 2 cut(s) 405, 546
EcoT22I ATGCAT 1 cut(s) 250
ErhI CCWWGG 2 cut(s) 405, 546
FaeI CATG 4 cut(s) 252, 409, 496, 550
FalI AAGNNNNNCTT 2 cut(s) 126, 158
FaqI GGGAC 1 cut(s) 352
FatI CATG 4 cut(s) 248, 405, 492, 546
Fnu4HI GCNGC 1 cut(s) 226
FokI GGATG 4 cut(s) 6, 107, 138, 193
Fsp4HI GCNGC 1 cut(s) 226
FspBI CTAG 2 cut(s) 186, 233
GlaI GCGC 1 cut(s) 224
GluI GCNGC 1 cut(s) 226
GsuI CTGGAG 1 cut(s) 141
HaeIII GGCC 1 cut(s) 545
HhaI GCGC 1 cut(s) 225
Hin1II CATG 4 cut(s) 252, 409, 496, 550
Hin6I GCGC 1 cut(s) 223
HinP1I GCGC 1 cut(s) 223
HinfI GANTC 2 cut(s) 139, 439
Hpy188I TCNGA 2 cut(s) 7, 68
Hpy188III TCNNGA 1 cut(s) 416
HpyAV CCTTC 3 cut(s) 115, 255, 372
HpyCH4III ACNGT 1 cut(s) 202
HpyCH4V TGCA 4 cut(s) 151, 197, 248, 473
HpyF10VI GCNNNNNNNGC 1 cut(s) 16
HpyF3I CTNAG 2 cut(s) 498, 568
Hsp92II CATG 4 cut(s) 252, 409, 496, 550
HspAI GCGC 1 cut(s) 223
Kzo9I GATC 1 cut(s) 265
LmnI GCTCC 2 cut(s) 7, 166
LweI GCATC 3 cut(s) 28, 160, 184
MaeI CTAG 2 cut(s) 186, 233
MaeIII GTNAC 1 cut(s) 209
MalI GATC 1 cut(s) 267
MboI GATC 1 cut(s) 265
MboII GAAGA 5 cut(s) 46, 134, 265, 302, 527
MflI RGATCY 1 cut(s) 265
MluCI AATT 4 cut(s) 38, 353, 393, 433
MlyI GAGTC 1 cut(s) 133
MmeI TCCRAC 1 cut(s) 46
MnlI CCTC 8 cut(s) 43, 50, 85, 165, 329, 470, 475, 493
Mph1103I ATGCAT 1 cut(s) 250
MseI TTAA 4 cut(s) 243, 297, 540, 574
MslI CAYNNNNRTG 1 cut(s) 24
MspCI CTTAAG 1 cut(s) 539
MspR9I CCNGG 2 cut(s) 178, 390
MssI GTTTAAAC 1 cut(s) 298
MvaI CCWGG 2 cut(s) 178, 390
MvnI CGCG 1 cut(s) 225
MwoI GCNNNNNNNGC 1 cut(s) 16
NcoI CCATGG 2 cut(s) 405, 546
NdeII GATC 1 cut(s) 265
NheI GCTAGC 1 cut(s) 185
NlaIII CATG 4 cut(s) 252, 409, 496, 550
NlaIV GGNNCC 2 cut(s) 267, 340
NsiI ATGCAT 1 cut(s) 250
PfeI GAWTC 1 cut(s) 439
PfoI TCCNGGA 1 cut(s) 388
PkrI GCNGC 1 cut(s) 227
PleI GAGTC 1 cut(s) 133
PmeI GTTTAAAC 1 cut(s) 298
PpsI GAGTC 1 cut(s) 133
Psp6I CCWGG 2 cut(s) 176, 388
PspGI CCWGG 2 cut(s) 176, 388
PspN4I GGNNCC 2 cut(s) 267, 340
PspPI GGNCC 1 cut(s) 339
PsuI RGATCY 1 cut(s) 265
RseI CAYNNNNRTG 1 cut(s) 24
SaqAI TTAA 4 cut(s) 243, 297, 540, 574
SatI GCNGC 1 cut(s) 226
Sau3AI GATC 1 cut(s) 265
Sau96I GGNCC 1 cut(s) 339
SchI GAGTC 1 cut(s) 133
ScrFI CCNGG 2 cut(s) 178, 390
SetI ASST 5 cut(s) 12, 54, 163, 311, 574
SfaNI GCATC 3 cut(s) 28, 160, 184
SinI GGWCC 1 cut(s) 339
SmiMI CAYNNNNRTG 1 cut(s) 24
SmlI CTYRAG 1 cut(s) 539
SmoI CTYRAG 1 cut(s) 539
SpeI ACTAGT 1 cut(s) 232
Sse9I AATT 4 cut(s) 38, 353, 393, 433
SsiI CCGC 1 cut(s) 225
SspMI CTAG 2 cut(s) 186, 233
StyD4I CCNGG 2 cut(s) 176, 388
StyI CCWWGG 2 cut(s) 405, 546
TaaI ACNGT 1 cut(s) 202
TaqII GACCGA 1 cut(s) 356
TasI AATT 4 cut(s) 38, 353, 393, 433
TauI GCSGC 1 cut(s) 228
TfiI GAWTC 1 cut(s) 439
Tru1I TTAA 4 cut(s) 243, 297, 540, 574
Tru9I TTAA 4 cut(s) 243, 297, 540, 574
TspDTI ATGAA 2 cut(s) 47, 125
Vha464I CTTAAG 1 cut(s) 539
VpaK11BI GGWCC 1 cut(s) 339
XapI RAATTY 2 cut(s) 393, 433
XspI CTAG 2 cut(s) 186, 233
Zsp2I ATGCAT 1 cut(s) 250
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.