Rroxscaffold_3G00263160

Cytochrome p450

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
Physical Location & Seq
Forward (+)
57088158 .. 57089502
1345 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00263160.1

Sequence Viewer

Length: 465 bp
ATGCTCCTCCATTTTGGAAGTGTCCCAGTCCTTGTTGTCTCCAAGGCTGAGGCTGCGCGCGAGAGTGACTGCGGGAGGAAGTACAATAACGTCGTTGGGGAAGATGGTGACAAAATATTGTTTAAGGATCTTGTAGGGGAGTTTATTGAGTTATTGGGAGGTATCTATATCGGAGACTATATCCCATGGCTCGCTTGGTTAGCTCGTGTCAATGGTTTGGACTCTAAATTAGACAAGGTGGCTAAACAATTTGATGACCTTTTAGATAGAGTGATTCAAGATCATATCGACCAACGTTCAAAGTGTGGAAACATTAACGACAATGTGAATCATACGGATGATCGGGAGGGTCGAAACGGCCAAAAGGATTTCGTGGACGTTTTACTTGGGATTCAAGAAGACAACTCATCAATTGGATTACCTATTGATAGAGTCACCGTAAAGGCTAAAGGCTCCTCATGGTAA

Protein Analysis

154

Amino Acids

17.14

Weight (kDa)

4.9

Isoelectric Point (pI)

26.23

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000061)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G48270 AT3G48280 AT3G48290 AT3G48290 AT3G48300 AT3G48300 AT3G48310 AT3G48320 AT4G20235 AT4G20235
fragaria_vesca FvH4_2g12910 FvH4_2g12910 FvH4_2g12910 FvH4_2g12910 FvH4_2g12910 FvH4_2g36190 FvH4_3g14160 FvH4_3g14210 FvH4_3g14260 FvH4_3g14260 FvH4_3g21100 FvH4_3g21380 FvH4_4g24460 FvH4_4g24500 FvH4_5g06571 FvH4_5g06571 FvH4_5g06571 FvH4_5g06571 FvH4_5g06572 FvH4_5g06573 FvH4_5g06574 FvH4_5g06575 FvH4_5g06576 FvH4_5g06577 FvH4_5g06577 FvH4_5g07540 FvH4_5g07550 FvH4_5g07560 FvH4_5g07570 FvH4_5g29491 FvH4_5g29492 FvH4_6g23870 FvH4_6g23880 FvH4_6g26870 FvH4_7g11861 FvH4_7g11862 FvH4_7g13050 FvH4_7g13060 FvH4_7g13080 FvH4_7g13080 FvH4_7g22630 FvH4_7g22650 FvH4_7g22651 FvH4_7g23020
malus_domestica MD03G1207400.v1.1 MD03G1214800.v1.1 MD03G1218500.v1.1 MD06G1163100.v1.1 MD06G1163300.v1.1 MD06G1163400.v1.1 MD06G1163500.v1.1 MD06G1163600.v1.1 MD06G1163800.v1.1 MD06G1164000.v1.1 MD06G1164100.v1.1 MD06G1224400.v1.1 MD08G1222800.v1.1 MD08G1222900.v1.1 MD08G1223100.v1.1 MD11G1091500.v1.1 MD11G1091800.v1.1 MD14G1163200.v1.1 MD14G1169000.v1.1 MD15G1207200.v1.1 MD15G1207300.v1.1 MD17G1259400.v1.1
prunus_persica Prupe.4G198100_v2.0.a1 Prupe.4G199100_v2.0.a1 Prupe.4G199400_v2.0.a1 Prupe.4G199800_v2.0.a1 Prupe.4G225200_v2.0.a1 Prupe.4G239100_v2.0.a1 Prupe.5G156600_v2.0.a1 Prupe.5G163500_v2.0.a1 Prupe.7G209500_v2.0.a1 Prupe.I003400_v2.0.a1
pyrus_communis pycom03g16340 pycom06g14600 pycom06g14610 pycom06g14620 pycom06g14630 pycom06g14640 pycom06g14670 pycom06g14690 pycom08g19390 pycom08g19400 pycom08g19410 pycom11g07600 pycom11g07610 pycom11g07620 pycom11g07660 pycom14g13580 pycom14g14080 pycom14g14100 pycom14g14110 pycom15g18380 pycom17g26080
rosa_chinensis RchiOBHm_Chr1g0339441 RchiOBHm_Chr1g0339451 RchiOBHm_Chr1g0352191 RchiOBHm_Chr1g0368221 RchiOBHm_Chr2g0129531 RchiOBHm_Chr2g0129541 RchiOBHm_Chr3g0477631 RchiOBHm_Chr3g0482551 RchiOBHm_Chr3g0482561 RchiOBHm_Chr3g0482571 RchiOBHm_Chr4g0411601 RchiOBHm_Chr4g0422181 RchiOBHm_Chr5g0036661 RchiOBHm_Chr5g0036731 RchiOBHm_Chr6g0274021 RchiOBHm_Chr7g0190921 RchiOBHm_Chr7g0190931 RchiOBHm_Chr7g0190941 RchiOBHm_Chr7g0190951 RchiOBHm_Chr7g0190961 RchiOBHm_Chr7g0190971 RchiOBHm_Chr7g0191001 RchiOBHm_Chr7g0191011 RchiOBHm_Chr7g0191021 RchiOBHm_Chr7g0192181 RchiOBHm_Chr7g0192191 RchiOBHm_Chr7g0192201 RchiOBHm_Chr7g0192221 RchiOBHm_Chr7g0192231 RchiOBHm_Chr7g0192281 RchiOBHm_Chr7g0197311
rosa_laevigata RLG00000003942 RLG00000004345 RLG00000004379 RLG00000004383 RLG00000004384 RLG00000004385 RLG00000004387 RLG00000004388 RLG00000004389 RLG00000004480 RLG00000004481 RLG00000004482 RLG00000004483 RLG00000004485 RLG00000008342 RLG00000008401 RLG00000013583 RLG00000017044 RLG00000027229 RLG00000028349 RLG00000028350 RLG00000028353 RLG00000028820 RLG00000033707 RLG00000033710
rosa_multiflora Rmu_co8020340.1_g000001 Rmu_co8096640.1_g000001 Rmu_co8214930.1_g000001 Rmu_co8223272.1_g000001 Rmu_co8282535.1_g000001 Rmu_co8343567.1_g000001 Rmu_co8404191.1_g000001 Rmu_co8455157.1_g000001 Rmu_sc0000062.1_g000028 Rmu_sc0000082.1_g000091 Rmu_sc0000509.1_g000017 Rmu_sc0000775.1_g000001 Rmu_sc0000999.1_g000034 Rmu_sc0001559.1_g000004 Rmu_sc0001559.1_g000009 Rmu_sc0002164.1_g000001 Rmu_sc0002164.1_g000005 Rmu_sc0002164.1_g000007 Rmu_sc0002164.1_g000008 Rmu_sc0002164.1_g000009 Rmu_sc0002164.1_g000019 Rmu_sc0002247.1_g000009 Rmu_sc0002373.1_g000002 Rmu_sc0002373.1_g000003 Rmu_sc0002944.1_g000059 Rmu_sc0003930.1_g000004 Rmu_sc0004958.1_g000001 Rmu_sc0005197.1_g000014 Rmu_sc0005898.1_g000008 Rmu_sc0005898.1_g000009 Rmu_sc0005898.1_g000015 Rmu_sc0006059.1_g000004 Rmu_sc0006059.1_g000010 Rmu_sc0006903.1_g000007 Rmu_sc0006903.1_g000008 Rmu_sc0006968.1_g000001 Rmu_sc0011009.1_g000009 Rmu_sc0022852.1_g000002 Rmu_sc0033854.1_g000001 Rmu_ssc0000421.1_g000057 Rmu_ssc0000421.1_g000067 Rmu_ssc0000421.1_g000069 Rmu_ssc0000421.1_g000072 Rmu_ssc0000421.1_g000081 Rmu_ssc0000421.1_g000086
rosa_roxburghii Rroxscaffold_158G00443680 Rroxscaffold_158G00443710 Rroxscaffold_158G00443720 Rroxscaffold_158G00443740 Rroxscaffold_1G00034950 Rroxscaffold_1G00044240 Rroxscaffold_1G00044270 Rroxscaffold_3G00241380 Rroxscaffold_3G00247000 Rroxscaffold_3G00263120 Rroxscaffold_3G00263150 Rroxscaffold_3G00263160 Rroxscaffold_3G00263170 Rroxscaffold_3G00263180 Rroxscaffold_3G00263190 Rroxscaffold_3G00263210 Rroxscaffold_3G00263230 Rroxscaffold_3G00263260 Rroxscaffold_3G00264110 Rroxscaffold_3G00264130 Rroxscaffold_3G00264160 Rroxscaffold_3G00264180 Rroxscaffold_3G00264200 Rroxscaffold_4G00288750 Rroxscaffold_4G00303110 Rroxscaffold_4G00303120 Rroxscaffold_4G00322280 Rroxscaffold_5G00356200 Rroxscaffold_6G00399150 Rroxscaffold_6G00399290 Rroxscaffold_7G00194770
rosa_rugosa Rorug01G0225300 Rorug01G0225400 Rorug01G0225800 Rorug01G0226000 Rorug01G0339400 Rorug01G0451500 Rorug03G0196900 Rorug03G0294900 Rorug04G0107500 Rorug04G0107600 Rorug04G0129700 Rorug04G0178000 Rorug05G0144900.1 Rorug05G0145000 Rorug05G0228000 Rorug05G0228600 Rorug06G0078300 Rorug06G0508000 Rorug06G0508100 Rorug06G0508100 Rorug06G0508400 Rorug06G0513400 Rorug07G0000100 Rorug07G0000200 Rorug07G0000300 Rorug07G0000500 Rorug07G0000800
rosa_samantha Rh1BG060400 Rh1BG210300 Rh1BG210700 Rh1BG210800 Rh1BG309800 Rh1CG223800 Rh1CG224200 Rh1CG325200 Rh1DG237000 Rh1DG237400 Rh1DG341600 Rh2DG365700 Rh3AG212500 Rh3AG248400 Rh3CG239800 Rh3DG239300 Rh4AG169300 Rh4BG166200 Rh4BG240500 Rh4BG240600 Rh4DG163600 Rh5AG249600 Rh5AG249900 Rh5AG250000 Rh5CG283100 Rh5CG283200 Rh5CG283400 Rh5DG259200 Rh5DG259800 Rh6BG197700 Rh6CG197800 Rh6DG189400 Rh7AG114900 Rh7AG115000 Rh7AG115200 Rh7AG115300 Rh7AG115400 Rh7AG115500 Rh7AG123900 Rh7AG124100 Rh7AG124300 Rh7BG117200 Rh7BG117400 Rh7BG118400 Rh7BG125400 Rh7BG125600 Rh7BG125700 Rh7BG125800 Rh7BG125900 Rh7BG126000 Rh7BG126400 Rh7BG126600 Rh7BG126700 Rh7BG166200 Rh7DG118600 Rh7DG118700 Rh7DG118900 Rh7DG119000 Rh7DG119100 Rh7DG127400 Rh7DG127600 Rh7DG127700 Rh7DG127900 Rh7DG128200
rosa_wichuraiana Rw1G013270 Rw1G020790 Rw2G027890 Rw2G028040 Rw3G019240 Rw4G014070 Rw4G020540 Rw5G021320 Rw5G022970 Rw6G016920 Rw7G010020 Rw7G010040 Rw7G010580 Rw7G010590 Rw7G010600 Rw7G010610 Rw7G010620 Rw7G010630 Rw7G010640 Rw7G010690

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 58, 60
AciI CCGC 1 cut(s) 72
AclI AACGTT 1 cut(s) 295
AclWI GGATC 1 cut(s) 135
AcoI YGGCCR 1 cut(s) 358
AfaI GTAC 1 cut(s) 83
AgsI TTSAA 3 cut(s) 278, 300, 395
AluBI AGCT 1 cut(s) 203
AluI AGCT 1 cut(s) 203
Alw26I GTCTC 2 cut(s) 43, 168
AlwI GGATC 1 cut(s) 135
AoxI GGCC 1 cut(s) 358
ApeKI GCWGC 1 cut(s) 53
AspLEI GCGC 2 cut(s) 58, 60
AsuHPI GGTGA 2 cut(s) 119, 427
BauI CACGAG 1 cut(s) 204
BbsI GAAGAC 1 cut(s) 405
BbvCI CCTCAGC 1 cut(s) 48
BbvI GCAGC 1 cut(s) 40
BccI CCATC 1 cut(s) 98
BceAI ACGGC 1 cut(s) 373
BcoDI GTCTC 2 cut(s) 43, 168
BisI GCNGC 1 cut(s) 54
BlsI GCNGC 1 cut(s) 55
BmiI GGNNCC 1 cut(s) 454
BmrI ACTGGG 1 cut(s) 20
BmuI ACTGGG 1 cut(s) 20
BpiI GAAGAC 1 cut(s) 405
Bpu10I CCTNAGC 1 cut(s) 48
BsaJI CCNNGG 2 cut(s) 42, 185
Bse1I ACTGG 1 cut(s) 26
BseDI CCNNGG 2 cut(s) 42, 185
BseGI GGATG 1 cut(s) 343
BseMII CTCAG 1 cut(s) 39
BseNI ACTGG 1 cut(s) 26
BsePI GCGCGC 1 cut(s) 56
BseRI GAGGAG 1 cut(s) 445
BseXI GCAGC 1 cut(s) 40
Bsh1236I CGCG 2 cut(s) 58, 60
BshFI GGCC 1 cut(s) 360
BslFI GGGAC 1 cut(s) 8
BsmAI GTCTC 2 cut(s) 43, 168
BsmFI GGGAC 1 cut(s) 8
BsnI GGCC 1 cut(s) 360
Bsp143I GATC 3 cut(s) 127, 280, 340
Bsp19I CCATGG 1 cut(s) 185
BspACI CCGC 1 cut(s) 72
BspANI GGCC 1 cut(s) 360
BspCNI CTCAG 1 cut(s) 40
BspFNI CGCG 2 cut(s) 58, 60
BspLI GGNNCC 1 cut(s) 454
BspPI GGATC 1 cut(s) 135
BsrI ACTGG 1 cut(s) 26
BssECI CCNNGG 2 cut(s) 42, 185
BssHII GCGCGC 1 cut(s) 56
BssMI GATC 3 cut(s) 127, 280, 340
BssSI CACGAG 1 cut(s) 204
BssT1I CCWWGG 2 cut(s) 42, 185
Bst2BI CACGAG 1 cut(s) 204
Bst4CI ACNGT 1 cut(s) 439
BstC8I GCNNGC 2 cut(s) 58, 192
BstDEI CTNAG 1 cut(s) 48
BstDSI CCRYGG 1 cut(s) 185
BstF5I GGATG 1 cut(s) 343
BstFNI CGCG 2 cut(s) 58, 60
BstHHI GCGC 2 cut(s) 58, 60
BstKTI GATC 3 cut(s) 130, 283, 343
BstMAI GTCTC 2 cut(s) 43, 168
BstMBI GATC 3 cut(s) 127, 280, 340
BstMWI GCNNNNNNNGC 2 cut(s) 53, 200
BstUI CGCG 2 cut(s) 58, 60
BstV1I GCAGC 1 cut(s) 40
BstV2I GAAGAC 1 cut(s) 405
BstX2I RGATCY 1 cut(s) 127
BstYI RGATCY 1 cut(s) 127
BsuRI GGCC 1 cut(s) 360
BtgI CCRYGG 1 cut(s) 185
BtsCI GGATG 1 cut(s) 343
Cac8I GCNNGC 2 cut(s) 58, 192
CfoI GCGC 2 cut(s) 58, 60
Csp6I GTAC 1 cut(s) 82
CviAII CATG 2 cut(s) 186, 459
CviJI RGCY 8 cut(s) 47, 53, 190, 203, 242, 360, 446, 453
CviKI_1 RGCY 8 cut(s) 47, 53, 190, 203, 242, 360, 446, 453
CviQI GTAC 1 cut(s) 82
DdeI CTNAG 1 cut(s) 48
DpnI GATC 3 cut(s) 129, 282, 342
DpnII GATC 3 cut(s) 127, 280, 340
EaeI YGGCCR 1 cut(s) 358
Eco130I CCWWGG 2 cut(s) 42, 185
EcoT14I CCWWGG 2 cut(s) 42, 185
ErhI CCWWGG 2 cut(s) 42, 185
FaeI CATG 2 cut(s) 189, 462
FaiI YATR 6 cut(s) 168, 180, 187, 285, 333, 460
FaqI GGGAC 1 cut(s) 8
FatI CATG 2 cut(s) 185, 458
FauI CCCGC 1 cut(s) 65
Fnu4HI GCNGC 1 cut(s) 54
FokI GGATG 1 cut(s) 350
Fsp4HI GCNGC 1 cut(s) 54
GlaI GCGC 2 cut(s) 57, 59
GluI GCNGC 1 cut(s) 54
HaeIII GGCC 1 cut(s) 360
HhaI GCGC 2 cut(s) 58, 60
Hin1II CATG 2 cut(s) 189, 462
Hin6I GCGC 2 cut(s) 56, 58
HinP1I GCGC 2 cut(s) 56, 58
HinfI GANTC 5 cut(s) 221, 274, 328, 391, 432
HphI GGTGA 2 cut(s) 119, 427
Hpy166II GTNNAC 1 cut(s) 376
Hpy188I TCNGA 1 cut(s) 173
Hpy188III TCNNGA 3 cut(s) 278, 344, 395
Hpy8I GTNNAC 1 cut(s) 376
Hpy99I CGWCG 1 cut(s) 95
HpyCH4III ACNGT 1 cut(s) 439
HpyCH4IV ACGT 3 cut(s) 90, 295, 378
HpyF10VI GCNNNNNNNGC 2 cut(s) 53, 200
HpyF3I CTNAG 1 cut(s) 48
HpySE526I ACGT 3 cut(s) 90, 295, 378
Hsp92II CATG 2 cut(s) 189, 462
HspAI GCGC 2 cut(s) 56, 58
Kzo9I GATC 3 cut(s) 127, 280, 340
LmnI GCTCC 2 cut(s) 9, 458
LpnPI CCDG 1 cut(s) 39
Lsp1109I GCAGC 1 cut(s) 40
MaeII ACGT 3 cut(s) 90, 295, 378
MaeIII GTNAC 3 cut(s) 65, 107, 433
MalI GATC 3 cut(s) 129, 282, 342
MboI GATC 3 cut(s) 127, 280, 340
MboII GAAGA 2 cut(s) 113, 410
MfeI CAATTG 1 cut(s) 411
MflI RGATCY 1 cut(s) 127
MluCI AATT 3 cut(s) 227, 248, 411
MlyI GAGTC 2 cut(s) 215, 441
MnlI CCTC 5 cut(s) 17, 43, 69, 152, 340
MseI TTAA 2 cut(s) 123, 315
MslI CAYNNNNRTG 1 cut(s) 336
MunI CAATTG 1 cut(s) 411
MvnI CGCG 2 cut(s) 58, 60
MwoI GCNNNNNNNGC 2 cut(s) 53, 200
NcoI CCATGG 1 cut(s) 185
NdeII GATC 3 cut(s) 127, 280, 340
NlaIII CATG 2 cut(s) 189, 462
NlaIV GGNNCC 1 cut(s) 454
NmuCI GTSAC 3 cut(s) 65, 107, 433
PauI GCGCGC 1 cut(s) 56
PcsI WCGNNNNNNNCGW 1 cut(s) 349
PfeI GAWTC 3 cut(s) 274, 328, 391
PkrI GCNGC 1 cut(s) 55
PleI GAGTC 2 cut(s) 215, 440
PpsI GAGTC 2 cut(s) 215, 440
Psp1406I AACGTT 1 cut(s) 295
PspN4I GGNNCC 1 cut(s) 454
PsuI RGATCY 1 cut(s) 127
PteI GCGCGC 1 cut(s) 56
RsaI GTAC 1 cut(s) 83
RsaNI GTAC 1 cut(s) 82
RseI CAYNNNNRTG 1 cut(s) 336
SaqAI TTAA 2 cut(s) 123, 315
SatI GCNGC 1 cut(s) 54
Sau3AI GATC 3 cut(s) 127, 280, 340
SchI GAGTC 2 cut(s) 215, 441
SetI ASST 8 cut(s) 93, 163, 205, 240, 261, 298, 381, 424
SmiMI CAYNNNNRTG 1 cut(s) 336
Sse9I AATT 3 cut(s) 227, 248, 411
SsiI CCGC 1 cut(s) 72
SspI AATATT 1 cut(s) 117
StyI CCWWGG 2 cut(s) 42, 185
TaaI ACNGT 1 cut(s) 439
TaiI ACGT 3 cut(s) 93, 298, 381
TaqI TCGA 2 cut(s) 288, 352
TasI AATT 3 cut(s) 227, 248, 411
TatI WGTACW 1 cut(s) 81
TfiI GAWTC 3 cut(s) 274, 328, 391
Tru1I TTAA 2 cut(s) 123, 315
Tru9I TTAA 2 cut(s) 123, 315
TseFI GTSAC 3 cut(s) 65, 107, 433
TseI GCWGC 1 cut(s) 53
Tsp45I GTSAC 3 cut(s) 65, 107, 433
TspGWI ACGGA 1 cut(s) 350
XcmI CCANNNNNNNNNTGG 1 cut(s) 192
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.