Cytochrome p450
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| zf-CCCH_3 | PF15663 | 39 - 93 | 5.8e-11 | Zinc-finger containing family |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 640 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 665 |
| AccI | GTMKAC | 1 cut(s) | 135 |
| AccII | CGCG | 1 cut(s) | 1455 |
| AciI | CCGC | 3 cut(s) | 26, 32, 1130 |
| AclWI | GGATC | 2 cut(s) | 1239, 1387 |
| AcoI | YGGCCR | 2 cut(s) | 1932, 2005 |
| AcsI | RAATTY | 3 cut(s) | 253, 967, 1558 |
| AcuI | CTGAAG | 6 cut(s) | 120, 776, 1746, 1793, 1812, 2067 |
| AfaI | GTAC | 3 cut(s) | 209, 517, 690 |
| AfiI | CCNNNNNNNGG | 8 cut(s) | 88, 117, 287, 665, 1105, 1224, 1417, 2200 |
| AflII | CTTAAG | 1 cut(s) | 533 |
| AflIII | ACRYGT | 1 cut(s) | 1273 |
| AhlI | ACTAGT | 2 cut(s) | 476, 691 |
| AjnI | CCWGG | 5 cut(s) | 865, 1372, 1876, 2002, 2193 |
| AjuI | GAANNNNNNNTTGG | 6 cut(s) | 359, 391, 915, 947, 1488, 1520 |
| AleI | CACNNNNGTG | 1 cut(s) | 1188 |
| AloI | GAACNNNNNNTCC | 4 cut(s) | 212, 244, 861, 893 |
| Alw21I | GWGCWC | 1 cut(s) | 566 |
| Alw26I | GTCTC | 9 cut(s) | 160, 696, 756, 1114, 1503, 1634, 1883, 1937, 2036 |
| Alw44I | GTGCAC | 1 cut(s) | 562 |
| AlwI | GGATC | 2 cut(s) | 1239, 1387 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 1808 |
| AoxI | GGCC | 7 cut(s) | 108, 777, 1475, 1748, 1861, 1932, 2005 |
| ApaLI | GTGCAC | 1 cut(s) | 562 |
| ApoI | RAATTY | 3 cut(s) | 253, 967, 1558 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 1279, 1311 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 1038 |
| AspA2I | CCTAGG | 1 cut(s) | 215 |
| AspLEI | GCGC | 2 cut(s) | 14, 1410 |
| AspS9I | GGNCC | 7 cut(s) | 323, 461, 1096, 1528, 1748, 1862, 2080 |
| AsuC2I | CCSGG | 1 cut(s) | 1865 |
| AvaII | GGWCC | 5 cut(s) | 323, 461, 1096, 1528, 2080 |
| AvrII | CCTAGG | 1 cut(s) | 215 |
| AxyI | CCTNAGG | 1 cut(s) | 585 |
| BaeGI | GKGCMC | 1 cut(s) | 566 |
| BalI | TGGCCA | 2 cut(s) | 1934, 2007 |
| BanII | GRGCYC | 3 cut(s) | 305, 1136, 1337 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 508, 540 |
| BauI | CACGAG | 2 cut(s) | 1050, 2084 |
| BbsI | GAAGAC | 4 cut(s) | 852, 1343, 2004, 2211 |
| Bbv12I | GWGCWC | 1 cut(s) | 566 |
| BbvCI | CCTCAGC | 1 cut(s) | 1340 |
| BceAI | ACGGC | 1 cut(s) | 1278 |
| BciT130I | CCWGG | 5 cut(s) | 867, 1374, 1878, 2004, 2195 |
| BclI | TGATCA | 1 cut(s) | 1069 |
| BcnI | CCSGG | 1 cut(s) | 1865 |
| BcoDI | GTCTC | 9 cut(s) | 160, 696, 756, 1114, 1503, 1634, 1883, 1937, 2036 |
| BcuI | ACTAGT | 2 cut(s) | 476, 691 |
| BfaI | CTAG | 5 cut(s) | 216, 477, 692, 699, 1127 |
| BfmI | CTRYAG | 3 cut(s) | 59, 768, 1800 |
| BfrI | CTTAAG | 1 cut(s) | 533 |
| BfuAI | ACCTGC | 1 cut(s) | 640 |
| BglII | AGATCT | 2 cut(s) | 1198, 1823 |
| BlnI | CCTAGG | 1 cut(s) | 215 |
| Bme1390I | CCNGG | 6 cut(s) | 867, 1374, 1865, 1878, 2004, 2195 |
| Bme18I | GGWCC | 5 cut(s) | 323, 461, 1096, 1528, 2080 |
| BmgT120I | GGNCC | 7 cut(s) | 323, 461, 1096, 1528, 1748, 1862, 2080 |
| BmiI | GGNNCC | 7 cut(s) | 302, 1097, 1336, 1529, 1569, 1885, 2001 |
| BmrFI | CCNGG | 6 cut(s) | 867, 1374, 1865, 1878, 2004, 2195 |
| BmsI | GCATC | 5 cut(s) | 283, 1065, 1645, 1899, 1954 |
| BoxI | GACNNNNGTC | 1 cut(s) | 1449 |
| BpiI | GAAGAC | 4 cut(s) | 852, 1343, 2004, 2211 |
| BpmI | CTGGAG | 3 cut(s) | 1371, 2060, 2216 |
| Bpu10I | CCTNAGC | 1 cut(s) | 1340 |
| BpuEI | CTTGAG | 4 cut(s) | 367, 552, 2096, 2111 |
| BpuMI | CCSGG | 1 cut(s) | 1865 |
| BsaBI | GATNNNNATC | 2 cut(s) | 1026, 1713 |
| BsaJI | CCNNGG | 5 cut(s) | 215, 511, 916, 1495, 1681 |
| Bsc4I | CCNNNNNNNGG | 8 cut(s) | 88, 117, 287, 665, 1105, 1224, 1417, 2200 |
| Bse1I | ACTGG | 2 cut(s) | 1388, 2008 |
| Bse21I | CCTNAGG | 1 cut(s) | 585 |
| Bse3DI | GCAATG | 1 cut(s) | 1264 |
| Bse8I | GATNNNNATC | 2 cut(s) | 1026, 1713 |
| BseBI | CCWGG | 5 cut(s) | 867, 1374, 1878, 2004, 2195 |
| BseDI | CCNNGG | 5 cut(s) | 215, 511, 916, 1495, 1681 |
| BseGI | GGATG | 6 cut(s) | 274, 841, 1600, 1618, 2146, 2218 |
| BseJI | GATNNNNATC | 2 cut(s) | 1026, 1713 |
| BseLI | CCNNNNNNNGG | 8 cut(s) | 88, 117, 287, 665, 1105, 1224, 1417, 2200 |
| BseMI | GCAATG | 1 cut(s) | 1264 |
| BseMII | CTCAG | 5 cut(s) | 599, 1107, 1232, 1354, 1647 |
| BseNI | ACTGG | 2 cut(s) | 1388, 2008 |
| BseRI | GAGGAG | 6 cut(s) | 119, 609, 1165, 1295, 1594, 2213 |
| BseSI | GKGCMC | 1 cut(s) | 566 |
| BseYI | CCCAGC | 2 cut(s) | 304, 499 |
| BsgI | GTGCAG | 1 cut(s) | 636 |
| Bsh1236I | CGCG | 1 cut(s) | 1455 |
| BshFI | GGCC | 7 cut(s) | 110, 779, 1477, 1750, 1863, 1934, 2007 |
| BsiHKAI | GWGCWC | 1 cut(s) | 566 |
| BsiSI | CCGG | 1 cut(s) | 1865 |
| BslFI | GGGAC | 4 cut(s) | 383, 1109, 1474, 1909 |
| BslI | CCNNNNNNNGG | 8 cut(s) | 88, 117, 287, 665, 1105, 1224, 1417, 2200 |
| BsmAI | GTCTC | 9 cut(s) | 160, 696, 756, 1114, 1503, 1634, 1883, 1937, 2036 |
| BsmBI | CGTCTC | 2 cut(s) | 160, 1634 |
| BsmFI | GGGAC | 4 cut(s) | 383, 1109, 1474, 1909 |
| BsmI | GAATGC | 2 cut(s) | 552, 1672 |
| BsnI | GGCC | 7 cut(s) | 110, 779, 1477, 1750, 1863, 1934, 2007 |
| Bsp1286I | GDGCHC | 4 cut(s) | 305, 566, 1136, 1337 |
| Bsp1407I | TGTACA | 1 cut(s) | 207 |
| Bsp143I | GATC | 9 cut(s) | 1027, 1069, 1180, 1198, 1244, 1379, 1732, 1823, 2101 |
| Bsp19I | CCATGG | 2 cut(s) | 511, 916 |
| Bsp68I | TCGCGA | 1 cut(s) | 1455 |
| BspACI | CCGC | 3 cut(s) | 26, 32, 1130 |
| BspANI | GGCC | 7 cut(s) | 110, 779, 1477, 1750, 1863, 1934, 2007 |
| BspCNI | CTCAG | 5 cut(s) | 598, 1108, 1233, 1353, 1646 |
| BspFNI | CGCG | 1 cut(s) | 1455 |
| BspHI | TCATGA | 1 cut(s) | 949 |
| BspLI | GGNNCC | 7 cut(s) | 302, 1097, 1336, 1529, 1569, 1885, 2001 |
| BspMAI | CTGCAG | 2 cut(s) | 63, 1804 |
| BspMI | ACCTGC | 1 cut(s) | 640 |
| BspPI | GGATC | 2 cut(s) | 1239, 1387 |
| BspTI | CTTAAG | 1 cut(s) | 533 |
| BsrDI | GCAATG | 1 cut(s) | 1264 |
| BsrGI | TGTACA | 1 cut(s) | 207 |
| BsrI | ACTGG | 2 cut(s) | 1388, 2008 |
| BssECI | CCNNGG | 5 cut(s) | 215, 511, 916, 1495, 1681 |
| BssMI | GATC | 9 cut(s) | 1027, 1069, 1180, 1198, 1244, 1379, 1732, 1823, 2101 |
| BssSI | CACGAG | 2 cut(s) | 1050, 2084 |
| BssT1I | CCWWGG | 5 cut(s) | 215, 511, 916, 1495, 1681 |
| Bst2BI | CACGAG | 2 cut(s) | 1050, 2084 |
| Bst2UI | CCWGG | 5 cut(s) | 867, 1374, 1878, 2004, 2195 |
| Bst4CI | ACNGT | 3 cut(s) | 194, 995, 1919 |
| Bst6I | CTCTTC | 6 cut(s) | 96, 110, 1769, 1775, 1935, 2178 |
| BstAFI | CTTAAG | 1 cut(s) | 533 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 368 |
| BstAUI | TGTACA | 1 cut(s) | 207 |
| BstC8I | GCNNGC | 3 cut(s) | 360, 750, 1132 |
| BstDEI | CTNAG | 8 cut(s) | 585, 722, 1116, 1241, 1340, 1633, 1760, 2223 |
| BstDSI | CCRYGG | 2 cut(s) | 511, 916 |
| BstENI | CCTNNNNNAGG | 2 cut(s) | 115, 2198 |
| BstF5I | GGATG | 6 cut(s) | 274, 841, 1600, 1618, 2146, 2218 |
| BstFNI | CGCG | 1 cut(s) | 1455 |
| BstHHI | GCGC | 2 cut(s) | 14, 1410 |
| BstKTI | GATC | 9 cut(s) | 1030, 1072, 1183, 1201, 1247, 1382, 1735, 1826, 2104 |
| BstMAI | GTCTC | 9 cut(s) | 160, 696, 756, 1114, 1503, 1634, 1883, 1937, 2036 |
| BstMBI | GATC | 9 cut(s) | 1027, 1069, 1180, 1198, 1244, 1379, 1732, 1823, 2101 |
| BstNI | CCWGG | 5 cut(s) | 867, 1374, 1878, 2004, 2195 |
| BstNSI | RCATGY | 2 cut(s) | 203, 1277 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 1449 |
| BstSCI | CCNGG | 6 cut(s) | 865, 1372, 1863, 1876, 2002, 2193 |
| BstSFI | CTRYAG | 3 cut(s) | 59, 768, 1800 |
| BstSLI | GKGCMC | 1 cut(s) | 566 |
| BstUI | CGCG | 1 cut(s) | 1455 |
| BstV2I | GAAGAC | 4 cut(s) | 852, 1343, 2004, 2211 |
| BstX2I | RGATCY | 4 cut(s) | 1198, 1244, 1379, 1823 |
| BstYI | RGATCY | 4 cut(s) | 1198, 1244, 1379, 1823 |
| Bsu36I | CCTNAGG | 1 cut(s) | 585 |
| BsuRI | GGCC | 7 cut(s) | 110, 779, 1477, 1750, 1863, 1934, 2007 |
| BtgI | CCRYGG | 2 cut(s) | 511, 916 |
| BtgZI | GCGATG | 1 cut(s) | 1470 |
| BtsCI | GGATG | 6 cut(s) | 274, 841, 1600, 1618, 2146, 2218 |
| BtsIMutI | CAGTG | 2 cut(s) | 199, 1959 |
| BtuMI | TCGCGA | 1 cut(s) | 1455 |
| BveI | ACCTGC | 1 cut(s) | 640 |
| Cac8I | GCNNGC | 3 cut(s) | 360, 750, 1132 |
| CaiI | CAGNNNCTG | 1 cut(s) | 1808 |
| CciI | TCATGA | 1 cut(s) | 949 |
| CfoI | GCGC | 2 cut(s) | 14, 1410 |
| Cfr13I | GGNCC | 7 cut(s) | 323, 461, 1096, 1528, 1748, 1862, 2080 |
| Csp6I | GTAC | 3 cut(s) | 208, 516, 689 |
| CviQI | GTAC | 3 cut(s) | 208, 516, 689 |
| DdeI | CTNAG | 8 cut(s) | 585, 722, 1116, 1241, 1340, 1633, 1760, 2223 |
| DpnI | GATC | 9 cut(s) | 1029, 1071, 1182, 1200, 1246, 1381, 1734, 1825, 2103 |
| DpnII | GATC | 9 cut(s) | 1027, 1069, 1180, 1198, 1244, 1379, 1732, 1823, 2101 |
| DraI | TTTAAA | 1 cut(s) | 258 |
| EaeI | YGGCCR | 2 cut(s) | 1932, 2005 |
| Eam1104I | CTCTTC | 6 cut(s) | 96, 110, 1769, 1775, 1935, 2178 |
| EarI | CTCTTC | 6 cut(s) | 96, 110, 1769, 1775, 1935, 2178 |
| Eco130I | CCWWGG | 5 cut(s) | 215, 511, 916, 1495, 1681 |
| Eco147I | AGGCCT | 2 cut(s) | 110, 1477 |
| Eco24I | GRGCYC | 3 cut(s) | 305, 1136, 1337 |
| Eco47I | GGWCC | 5 cut(s) | 323, 461, 1096, 1528, 2080 |
| Eco57I | CTGAAG | 6 cut(s) | 120, 776, 1746, 1793, 1812, 2067 |
| Eco81I | CCTNAGG | 1 cut(s) | 585 |
| EcoNI | CCTNNNNNAGG | 2 cut(s) | 115, 2198 |
| EcoRI | GAATTC | 1 cut(s) | 967 |
| EcoRII | CCWGG | 5 cut(s) | 865, 1372, 1876, 2002, 2193 |
| EcoT14I | CCWWGG | 5 cut(s) | 215, 511, 916, 1495, 1681 |
| EcoT22I | ATGCAT | 1 cut(s) | 1914 |
| EcoT38I | GRGCYC | 3 cut(s) | 305, 1136, 1337 |
| ErhI | CCWWGG | 5 cut(s) | 215, 511, 916, 1495, 1681 |
| Esp3I | CGTCTC | 2 cut(s) | 160, 1634 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 1488, 1520 |
| FaqI | GGGAC | 4 cut(s) | 383, 1109, 1474, 1909 |
| FauI | CCCGC | 1 cut(s) | 1123 |
| FbaI | TGATCA | 1 cut(s) | 1069 |
| FblI | GTMKAC | 1 cut(s) | 135 |
| FokI | GGATG | 6 cut(s) | 261, 848, 1605, 1607, 2153, 2225 |
| FriOI | GRGCYC | 3 cut(s) | 305, 1136, 1337 |
| FspBI | CTAG | 5 cut(s) | 216, 477, 692, 699, 1127 |
| GlaI | GCGC | 2 cut(s) | 13, 1409 |
| GsaI | CCCAGC | 2 cut(s) | 308, 503 |
| GsuI | CTGGAG | 3 cut(s) | 1371, 2060, 2216 |
| HaeIII | GGCC | 7 cut(s) | 110, 779, 1477, 1750, 1863, 1934, 2007 |
| HapII | CCGG | 1 cut(s) | 1865 |
| HhaI | GCGC | 2 cut(s) | 14, 1410 |
| Hin6I | GCGC | 2 cut(s) | 12, 1408 |
| HinP1I | GCGC | 2 cut(s) | 12, 1408 |
| HindIII | AAGCTT | 1 cut(s) | 1367 |
| HinfI | GANTC | 7 cut(s) | 580, 764, 857, 902, 1307, 1438, 1768 |
| HpaII | CCGG | 1 cut(s) | 1865 |
| Hpy166II | GTNNAC | 5 cut(s) | 136, 197, 389, 564, 1537 |
| Hpy8I | GTNNAC | 5 cut(s) | 136, 197, 389, 564, 1537 |
| HpyCH4III | ACNGT | 3 cut(s) | 194, 995, 1919 |
| HpyCH4IV | ACGT | 1 cut(s) | 1627 |
| HpyF3I | CTNAG | 8 cut(s) | 585, 722, 1116, 1241, 1340, 1633, 1760, 2223 |
| HpySE526I | ACGT | 1 cut(s) | 1627 |
| HspAI | GCGC | 2 cut(s) | 12, 1408 |
| Ksp22I | TGATCA | 1 cut(s) | 1069 |
| Kzo9I | GATC | 9 cut(s) | 1027, 1069, 1180, 1198, 1244, 1379, 1732, 1823, 2101 |
| LmnI | GCTCC | 9 cut(s) | 300, 640, 1282, 1340, 1669, 1812, 1889, 1895, 2005 |
| LweI | GCATC | 5 cut(s) | 283, 1065, 1645, 1899, 1954 |
| MaeI | CTAG | 5 cut(s) | 216, 477, 692, 699, 1127 |
| MaeII | ACGT | 1 cut(s) | 1627 |
| MaeIII | GTNAC | 5 cut(s) | 694, 1043, 1400, 1442, 1464 |
| MalI | GATC | 9 cut(s) | 1029, 1071, 1182, 1200, 1246, 1381, 1734, 1825, 2103 |
| MboI | GATC | 9 cut(s) | 1027, 1069, 1180, 1198, 1244, 1379, 1732, 1823, 2101 |
| MfeI | CAATTG | 2 cut(s) | 1014, 1316 |
| MflI | RGATCY | 4 cut(s) | 1198, 1244, 1379, 1823 |
| MhlI | GDGCHC | 4 cut(s) | 305, 566, 1136, 1337 |
| MlsI | TGGCCA | 2 cut(s) | 1934, 2007 |
| MluNI | TGGCCA | 2 cut(s) | 1934, 2007 |
| MlyI | GAGTC | 3 cut(s) | 758, 866, 1447 |
| MmeI | TCCRAC | 2 cut(s) | 589, 1951 |
| Mox20I | TGGCCA | 2 cut(s) | 1934, 2007 |
| Mph1103I | ATGCAT | 1 cut(s) | 1914 |
| MroXI | GAANNNNTTC | 1 cut(s) | 1038 |
| MscI | TGGCCA | 2 cut(s) | 1934, 2007 |
| MseI | TTAA | 4 cut(s) | 251, 257, 534, 1833 |
| MslI | CAYNNNNRTG | 2 cut(s) | 1188, 2028 |
| Msp20I | TGGCCA | 2 cut(s) | 1934, 2007 |
| MspA1I | CMGCKG | 4 cut(s) | 58, 308, 320, 1799 |
| MspCI | CTTAAG | 1 cut(s) | 533 |
| MspI | CCGG | 1 cut(s) | 1865 |
| MspR9I | CCNGG | 6 cut(s) | 867, 1374, 1865, 1878, 2004, 2195 |
| MunI | CAATTG | 2 cut(s) | 1014, 1316 |
| Mva1269I | GAATGC | 2 cut(s) | 552, 1672 |
| MvaI | CCWGG | 5 cut(s) | 867, 1374, 1878, 2004, 2195 |
| MvnI | CGCG | 1 cut(s) | 1455 |
| NciI | CCSGG | 1 cut(s) | 1865 |
| NcoI | CCATGG | 2 cut(s) | 511, 916 |
| NdeII | GATC | 9 cut(s) | 1027, 1069, 1180, 1198, 1244, 1379, 1732, 1823, 2101 |
| NlaIV | GGNNCC | 7 cut(s) | 302, 1097, 1336, 1529, 1569, 1885, 2001 |
| NmuCI | GTSAC | 4 cut(s) | 1043, 1400, 1442, 1464 |
| NruI | TCGCGA | 1 cut(s) | 1455 |
| NsiI | ATGCAT | 1 cut(s) | 1914 |
| NspI | RCATGY | 2 cut(s) | 203, 1277 |
| OliI | CACNNNNGTG | 1 cut(s) | 1188 |
| PagI | TCATGA | 1 cut(s) | 949 |
| PceI | AGGCCT | 2 cut(s) | 110, 1477 |
| PciI | ACATGT | 1 cut(s) | 1273 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 150, 1048 |
| PctI | GAATGC | 2 cut(s) | 552, 1672 |
| PdmI | GAANNNNTTC | 1 cut(s) | 1038 |
| PfeI | GAWTC | 4 cut(s) | 580, 902, 1307, 1768 |
| PflFI | GACNNNGTC | 1 cut(s) | 1948 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 665 |
| PfoI | TCCNGGA | 1 cut(s) | 865 |
| PleI | GAGTC | 3 cut(s) | 758, 865, 1446 |
| PpsI | GAGTC | 3 cut(s) | 758, 865, 1446 |
| PscI | ACATGT | 1 cut(s) | 1273 |
| PshAI | GACNNNNGTC | 1 cut(s) | 1449 |
| Psp6I | CCWGG | 5 cut(s) | 865, 1372, 1876, 2002, 2193 |
| PspFI | CCCAGC | 2 cut(s) | 304, 499 |
| PspGI | CCWGG | 5 cut(s) | 865, 1372, 1876, 2002, 2193 |
| PspN4I | GGNNCC | 7 cut(s) | 302, 1097, 1336, 1529, 1569, 1885, 2001 |
| PspPI | GGNCC | 7 cut(s) | 323, 461, 1096, 1528, 1748, 1862, 2080 |
| PstI | CTGCAG | 2 cut(s) | 63, 1804 |
| PstNI | CAGNNNCTG | 1 cut(s) | 1808 |
| PsuI | RGATCY | 4 cut(s) | 1198, 1244, 1379, 1823 |
| PsyI | GACNNNGTC | 1 cut(s) | 1948 |
| PvuII | CAGCTG | 4 cut(s) | 58, 308, 320, 1799 |
| RruI | TCGCGA | 1 cut(s) | 1455 |
| RsaI | GTAC | 3 cut(s) | 209, 517, 690 |
| RsaNI | GTAC | 3 cut(s) | 208, 516, 689 |
| RseI | CAYNNNNRTG | 2 cut(s) | 1188, 2028 |
| SaqAI | TTAA | 4 cut(s) | 251, 257, 534, 1833 |
| Sau3AI | GATC | 9 cut(s) | 1027, 1069, 1180, 1198, 1244, 1379, 1732, 1823, 2101 |
| Sau96I | GGNCC | 7 cut(s) | 323, 461, 1096, 1528, 1748, 1862, 2080 |
| SchI | GAGTC | 3 cut(s) | 758, 866, 1447 |
| ScrFI | CCNGG | 6 cut(s) | 867, 1374, 1865, 1878, 2004, 2195 |
| SduI | GDGCHC | 4 cut(s) | 305, 566, 1136, 1337 |
| SfaNI | GCATC | 5 cut(s) | 283, 1065, 1645, 1899, 1954 |
| SfcI | CTRYAG | 3 cut(s) | 59, 768, 1800 |
| SinI | GGWCC | 5 cut(s) | 323, 461, 1096, 1528, 2080 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 1188, 2028 |
| SmlI | CTYRAG | 5 cut(s) | 382, 533, 567, 2075, 2090 |
| SmoI | CTYRAG | 5 cut(s) | 382, 533, 567, 2075, 2090 |
| SpeI | ACTAGT | 2 cut(s) | 476, 691 |
| SseBI | AGGCCT | 2 cut(s) | 110, 1477 |
| SsiI | CCGC | 3 cut(s) | 26, 32, 1130 |
| SspMI | CTAG | 5 cut(s) | 216, 477, 692, 699, 1127 |
| StuI | AGGCCT | 2 cut(s) | 110, 1477 |
| StyD4I | CCNGG | 6 cut(s) | 865, 1372, 1863, 1876, 2002, 2193 |
| StyI | CCWWGG | 5 cut(s) | 215, 511, 916, 1495, 1681 |
| TaaI | ACNGT | 3 cut(s) | 194, 995, 1919 |
| TaiI | ACGT | 1 cut(s) | 1630 |
| TaqI | TCGA | 2 cut(s) | 1030, 1507 |
| TatI | WGTACW | 2 cut(s) | 207, 688 |
| TauI | GCSGC | 1 cut(s) | 28 |
| TfiI | GAWTC | 4 cut(s) | 580, 902, 1307, 1768 |
| Tru1I | TTAA | 4 cut(s) | 251, 257, 534, 1833 |
| Tru9I | TTAA | 4 cut(s) | 251, 257, 534, 1833 |
| TscAI | CASTG | 2 cut(s) | 199, 1966 |
| TseFI | GTSAC | 4 cut(s) | 1043, 1400, 1442, 1464 |
| Tsp45I | GTSAC | 4 cut(s) | 1043, 1400, 1442, 1464 |
| TspDTI | ATGAA | 8 cut(s) | 590, 770, 1101, 1611, 1998, 2082, 2142, 2172 |
| TspGWI | ACGGA | 1 cut(s) | 969 |
| TspRI | CASTG | 2 cut(s) | 199, 1966 |
| Tth111I | GACNNNGTC | 1 cut(s) | 1948 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 665 |
| Vha464I | CTTAAG | 1 cut(s) | 533 |
| VneI | GTGCAC | 1 cut(s) | 562 |
| VpaK11BI | GGWCC | 5 cut(s) | 323, 461, 1096, 1528, 2080 |
| XagI | CCTNNNNNAGG | 2 cut(s) | 115, 2198 |
| XapI | RAATTY | 3 cut(s) | 253, 967, 1558 |
| XceI | RCATGY | 2 cut(s) | 203, 1277 |
| XmaJI | CCTAGG | 1 cut(s) | 215 |
| XmiI | GTMKAC | 1 cut(s) | 135 |
| XmnI | GAANNNNTTC | 1 cut(s) | 1038 |
| XspI | CTAG | 5 cut(s) | 216, 477, 692, 699, 1127 |
| Zsp2I | ATGCAT | 1 cut(s) | 1914 |