Rh5DG259200

cytochrome P450

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
Physical Location & Seq
Reverse (-)
30902462 .. 30907207
4746 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG259200.1

Sequence Viewer

Length: 366 bp
ATGAACGACAATGAAGACCTGAAGGATTTTGTGGACGTTTTGCTTGCGGTTAAGAAAGAAAATGTAGTTGGTGTCCCTATTGATCGAGTTGGCATGAAGGGTACCATCTTGATGCCCTATTTTCTTGTCCATATAATCCCCAGTAACTGCAGCACCGTACGCGCGCACACAAAATTCTTATCCAAGCACAGAGCTACAAACAAGAAGAACAAGATGTTAGATCTCCTGCCAATGCTTGTACGTTGCAACATTCTCAAGCTTGTTGCAGCATTCTCCCATGTAGCTAATAATTCTGGCCGTTTTCCTTGTCCTTTTATACAAATGGAAACCTTCACCAACTGGGCTTACACCCTCATCGTTCACTAG

Protein Analysis

121

Amino Acids

13.76

Weight (kDa)

9.47

Isoelectric Point (pI)

26.09

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000061)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G48270 AT3G48280 AT3G48290 AT3G48290 AT3G48300 AT3G48300 AT3G48310 AT3G48320 AT4G20235 AT4G20235
fragaria_vesca FvH4_2g12910 FvH4_2g12910 FvH4_2g12910 FvH4_2g12910 FvH4_2g12910 FvH4_2g36190 FvH4_3g14160 FvH4_3g14210 FvH4_3g14260 FvH4_3g14260 FvH4_3g21100 FvH4_3g21380 FvH4_4g24460 FvH4_4g24500 FvH4_5g06571 FvH4_5g06571 FvH4_5g06571 FvH4_5g06571 FvH4_5g06572 FvH4_5g06573 FvH4_5g06574 FvH4_5g06575 FvH4_5g06576 FvH4_5g06577 FvH4_5g06577 FvH4_5g07540 FvH4_5g07550 FvH4_5g07560 FvH4_5g07570 FvH4_5g29491 FvH4_5g29492 FvH4_6g23870 FvH4_6g23880 FvH4_6g26870 FvH4_7g11861 FvH4_7g11862 FvH4_7g13050 FvH4_7g13060 FvH4_7g13080 FvH4_7g13080 FvH4_7g22630 FvH4_7g22650 FvH4_7g22651 FvH4_7g23020
malus_domestica MD03G1207400.v1.1 MD03G1214800.v1.1 MD03G1218500.v1.1 MD06G1163100.v1.1 MD06G1163300.v1.1 MD06G1163400.v1.1 MD06G1163500.v1.1 MD06G1163600.v1.1 MD06G1163800.v1.1 MD06G1164000.v1.1 MD06G1164100.v1.1 MD06G1224400.v1.1 MD08G1222800.v1.1 MD08G1222900.v1.1 MD08G1223100.v1.1 MD11G1091500.v1.1 MD11G1091800.v1.1 MD14G1163200.v1.1 MD14G1169000.v1.1 MD15G1207200.v1.1 MD15G1207300.v1.1 MD17G1259400.v1.1
prunus_persica Prupe.4G198100_v2.0.a1 Prupe.4G199100_v2.0.a1 Prupe.4G199400_v2.0.a1 Prupe.4G199800_v2.0.a1 Prupe.4G225200_v2.0.a1 Prupe.4G239100_v2.0.a1 Prupe.5G156600_v2.0.a1 Prupe.5G163500_v2.0.a1 Prupe.7G209500_v2.0.a1 Prupe.I003400_v2.0.a1
pyrus_communis pycom03g16340 pycom06g14600 pycom06g14610 pycom06g14620 pycom06g14630 pycom06g14640 pycom06g14670 pycom06g14690 pycom08g19390 pycom08g19400 pycom08g19410 pycom11g07600 pycom11g07610 pycom11g07620 pycom11g07660 pycom14g13580 pycom14g14080 pycom14g14100 pycom14g14110 pycom15g18380 pycom17g26080
rosa_chinensis RchiOBHm_Chr1g0339441 RchiOBHm_Chr1g0339451 RchiOBHm_Chr1g0352191 RchiOBHm_Chr1g0368221 RchiOBHm_Chr2g0129531 RchiOBHm_Chr2g0129541 RchiOBHm_Chr3g0477631 RchiOBHm_Chr3g0482551 RchiOBHm_Chr3g0482561 RchiOBHm_Chr3g0482571 RchiOBHm_Chr4g0411601 RchiOBHm_Chr4g0422181 RchiOBHm_Chr5g0036661 RchiOBHm_Chr5g0036731 RchiOBHm_Chr6g0274021 RchiOBHm_Chr7g0190921 RchiOBHm_Chr7g0190931 RchiOBHm_Chr7g0190941 RchiOBHm_Chr7g0190951 RchiOBHm_Chr7g0190961 RchiOBHm_Chr7g0190971 RchiOBHm_Chr7g0191001 RchiOBHm_Chr7g0191011 RchiOBHm_Chr7g0191021 RchiOBHm_Chr7g0192181 RchiOBHm_Chr7g0192191 RchiOBHm_Chr7g0192201 RchiOBHm_Chr7g0192221 RchiOBHm_Chr7g0192231 RchiOBHm_Chr7g0192281 RchiOBHm_Chr7g0197311
rosa_laevigata RLG00000003942 RLG00000004345 RLG00000004379 RLG00000004383 RLG00000004384 RLG00000004385 RLG00000004387 RLG00000004388 RLG00000004389 RLG00000004480 RLG00000004481 RLG00000004482 RLG00000004483 RLG00000004485 RLG00000008342 RLG00000008401 RLG00000013583 RLG00000017044 RLG00000027229 RLG00000028349 RLG00000028350 RLG00000028353 RLG00000028820 RLG00000033707 RLG00000033710
rosa_multiflora Rmu_co8020340.1_g000001 Rmu_co8096640.1_g000001 Rmu_co8214930.1_g000001 Rmu_co8223272.1_g000001 Rmu_co8282535.1_g000001 Rmu_co8343567.1_g000001 Rmu_co8404191.1_g000001 Rmu_co8455157.1_g000001 Rmu_sc0000062.1_g000028 Rmu_sc0000082.1_g000091 Rmu_sc0000509.1_g000017 Rmu_sc0000775.1_g000001 Rmu_sc0000999.1_g000034 Rmu_sc0001559.1_g000004 Rmu_sc0001559.1_g000009 Rmu_sc0002164.1_g000001 Rmu_sc0002164.1_g000005 Rmu_sc0002164.1_g000007 Rmu_sc0002164.1_g000008 Rmu_sc0002164.1_g000009 Rmu_sc0002164.1_g000019 Rmu_sc0002247.1_g000009 Rmu_sc0002373.1_g000002 Rmu_sc0002373.1_g000003 Rmu_sc0002944.1_g000059 Rmu_sc0003930.1_g000004 Rmu_sc0004958.1_g000001 Rmu_sc0005197.1_g000014 Rmu_sc0005898.1_g000008 Rmu_sc0005898.1_g000009 Rmu_sc0005898.1_g000015 Rmu_sc0006059.1_g000004 Rmu_sc0006059.1_g000010 Rmu_sc0006903.1_g000007 Rmu_sc0006903.1_g000008 Rmu_sc0006968.1_g000001 Rmu_sc0011009.1_g000009 Rmu_sc0022852.1_g000002 Rmu_sc0033854.1_g000001 Rmu_ssc0000421.1_g000057 Rmu_ssc0000421.1_g000067 Rmu_ssc0000421.1_g000069 Rmu_ssc0000421.1_g000072 Rmu_ssc0000421.1_g000081 Rmu_ssc0000421.1_g000086
rosa_roxburghii Rroxscaffold_158G00443680 Rroxscaffold_158G00443710 Rroxscaffold_158G00443720 Rroxscaffold_158G00443740 Rroxscaffold_1G00034950 Rroxscaffold_1G00044240 Rroxscaffold_1G00044270 Rroxscaffold_3G00241380 Rroxscaffold_3G00247000 Rroxscaffold_3G00263120 Rroxscaffold_3G00263150 Rroxscaffold_3G00263160 Rroxscaffold_3G00263170 Rroxscaffold_3G00263180 Rroxscaffold_3G00263190 Rroxscaffold_3G00263210 Rroxscaffold_3G00263230 Rroxscaffold_3G00263260 Rroxscaffold_3G00264110 Rroxscaffold_3G00264130 Rroxscaffold_3G00264160 Rroxscaffold_3G00264180 Rroxscaffold_3G00264200 Rroxscaffold_4G00288750 Rroxscaffold_4G00303110 Rroxscaffold_4G00303120 Rroxscaffold_4G00322280 Rroxscaffold_5G00356200 Rroxscaffold_6G00399150 Rroxscaffold_6G00399290 Rroxscaffold_7G00194770
rosa_rugosa Rorug01G0225300 Rorug01G0225400 Rorug01G0225800 Rorug01G0226000 Rorug01G0339400 Rorug01G0451500 Rorug03G0196900 Rorug03G0294900 Rorug04G0107500 Rorug04G0107600 Rorug04G0129700 Rorug04G0178000 Rorug05G0144900.1 Rorug05G0145000 Rorug05G0228000 Rorug05G0228600 Rorug06G0078300 Rorug06G0508000 Rorug06G0508100 Rorug06G0508100 Rorug06G0508400 Rorug06G0513400 Rorug07G0000100 Rorug07G0000200 Rorug07G0000300 Rorug07G0000500 Rorug07G0000800
rosa_samantha Rh1BG060400 Rh1BG210300 Rh1BG210700 Rh1BG210800 Rh1BG309800 Rh1CG223800 Rh1CG224200 Rh1CG325200 Rh1DG237000 Rh1DG237400 Rh1DG341600 Rh2DG365700 Rh3AG212500 Rh3AG248400 Rh3CG239800 Rh3DG239300 Rh4AG169300 Rh4BG166200 Rh4BG240500 Rh4BG240600 Rh4DG163600 Rh5AG249600 Rh5AG249900 Rh5AG250000 Rh5CG283100 Rh5CG283200 Rh5CG283400 Rh5DG259200 Rh5DG259800 Rh6BG197700 Rh6CG197800 Rh6DG189400 Rh7AG114900 Rh7AG115000 Rh7AG115200 Rh7AG115300 Rh7AG115400 Rh7AG115500 Rh7AG123900 Rh7AG124100 Rh7AG124300 Rh7BG117200 Rh7BG117400 Rh7BG118400 Rh7BG125400 Rh7BG125600 Rh7BG125700 Rh7BG125800 Rh7BG125900 Rh7BG126000 Rh7BG126400 Rh7BG126600 Rh7BG126700 Rh7BG166200 Rh7DG118600 Rh7DG118700 Rh7DG118900 Rh7DG119000 Rh7DG119100 Rh7DG127400 Rh7DG127600 Rh7DG127700 Rh7DG127900 Rh7DG128200
rosa_wichuraiana Rw1G013270 Rw1G020790 Rw2G027890 Rw2G028040 Rw3G019240 Rw4G014070 Rw4G020540 Rw5G021320 Rw5G022970 Rw6G016920 Rw7G010020 Rw7G010040 Rw7G010580 Rw7G010590 Rw7G010600 Rw7G010610 Rw7G010620 Rw7G010630 Rw7G010640 Rw7G010690

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 101
AccB1I GGYRCC 1 cut(s) 101
AccII CGCG 2 cut(s) 162, 164
AciI CCGC 1 cut(s) 47
AcoI YGGCCR 1 cut(s) 295
AcsI RAATTY 1 cut(s) 173
AcuI CTGAAG 1 cut(s) 41
AfaI GTAC 3 cut(s) 103, 159, 240
AjuI GAANNNNNNNTTGG 2 cut(s) 51, 83
AluBI AGCT 3 cut(s) 194, 259, 284
AluI AGCT 3 cut(s) 194, 259, 284
AlwNI CAGNNNCTG 1 cut(s) 147
AoxI GGCC 1 cut(s) 295
ApeKI GCWGC 2 cut(s) 150, 266
ApoI RAATTY 1 cut(s) 173
Asp718I GGTACC 1 cut(s) 101
AspLEI GCGC 2 cut(s) 164, 166
AsuHPI GGTGA 1 cut(s) 325
BanI GGYRCC 1 cut(s) 101
BbsI GAAGAC 1 cut(s) 21
BbvI GCAGC 2 cut(s) 162, 278
BccI CCATC 1 cut(s) 113
BceAI ACGGC 1 cut(s) 282
BfaI CTAG 1 cut(s) 364
BfmI CTRYAG 1 cut(s) 148
BglII AGATCT 1 cut(s) 220
BisI GCNGC 2 cut(s) 151, 267
BlsI GCNGC 2 cut(s) 152, 268
BmiI GGNNCC 1 cut(s) 103
BmrI ACTGGG 2 cut(s) 135, 349
BmsI GCATC 1 cut(s) 102
BmuI ACTGGG 2 cut(s) 135, 349
BpiI GAAGAC 1 cut(s) 21
BpuEI CTTGAG 1 cut(s) 239
Bse1I ACTGG 2 cut(s) 141, 344
BseNI ACTGG 2 cut(s) 141, 344
BsePI GCGCGC 1 cut(s) 162
BseXI GCAGC 2 cut(s) 162, 278
Bsh1236I CGCG 2 cut(s) 162, 164
BshFI GGCC 1 cut(s) 297
BshNI GGYRCC 1 cut(s) 101
BsiWI CGTACG 1 cut(s) 157
BslFI GGGAC 1 cut(s) 59
BsmFI GGGAC 1 cut(s) 59
BsmI GAATGC 1 cut(s) 269
BsnI GGCC 1 cut(s) 297
Bsp143I GATC 2 cut(s) 82, 220
BspACI CCGC 1 cut(s) 47
BspANI GGCC 1 cut(s) 297
BspFNI CGCG 2 cut(s) 162, 164
BspLI GGNNCC 1 cut(s) 103
BspMAI CTGCAG 1 cut(s) 152
BspT107I GGYRCC 1 cut(s) 101
BsrI ACTGG 2 cut(s) 141, 344
BssHII GCGCGC 1 cut(s) 162
BssMI GATC 2 cut(s) 82, 220
Bst4CI ACNGT 1 cut(s) 157
BstC8I GCNNGC 2 cut(s) 45, 164
BstFNI CGCG 2 cut(s) 162, 164
BstHHI GCGC 2 cut(s) 164, 166
BstKTI GATC 2 cut(s) 85, 223
BstMBI GATC 2 cut(s) 82, 220
BstMWI GCNNNNNNNGC 1 cut(s) 159
BstSFI CTRYAG 1 cut(s) 148
BstUI CGCG 2 cut(s) 162, 164
BstV1I GCAGC 2 cut(s) 162, 278
BstV2I GAAGAC 1 cut(s) 21
BstX2I RGATCY 1 cut(s) 220
BstYI RGATCY 1 cut(s) 220
BsuRI GGCC 1 cut(s) 297
Cac8I GCNNGC 2 cut(s) 45, 164
CaiI CAGNNNCTG 1 cut(s) 147
CfoI GCGC 2 cut(s) 164, 166
Csp6I GTAC 3 cut(s) 102, 158, 239
CviAII CATG 2 cut(s) 94, 278
CviJI RGCY 5 cut(s) 194, 259, 284, 297, 344
CviKI_1 RGCY 5 cut(s) 194, 259, 284, 297, 344
CviQI GTAC 3 cut(s) 102, 158, 239
DpnI GATC 2 cut(s) 84, 222
DpnII GATC 2 cut(s) 82, 220
EaeI YGGCCR 1 cut(s) 295
Eco57I CTGAAG 1 cut(s) 41
FaeI CATG 2 cut(s) 97, 281
FaiI YATR 5 cut(s) 95, 132, 134, 279, 317
FaqI GGGAC 1 cut(s) 59
FatI CATG 2 cut(s) 93, 277
Fnu4HI GCNGC 2 cut(s) 151, 267
Fsp4HI GCNGC 2 cut(s) 151, 267
FspBI CTAG 1 cut(s) 364
GlaI GCGC 2 cut(s) 163, 165
GluI GCNGC 2 cut(s) 151, 267
HaeIII GGCC 1 cut(s) 297
HhaI GCGC 2 cut(s) 164, 166
Hin1II CATG 2 cut(s) 97, 281
Hin6I GCGC 2 cut(s) 162, 164
HinP1I GCGC 2 cut(s) 162, 164
HindIII AAGCTT 1 cut(s) 257
HphI GGTGA 1 cut(s) 325
Hpy166II GTNNAC 2 cut(s) 34, 361
Hpy188III TCNNGA 1 cut(s) 109
Hpy8I GTNNAC 2 cut(s) 34, 361
HpyAV CCTTC 3 cut(s) 16, 91, 340
HpyCH4III ACNGT 1 cut(s) 157
HpyCH4IV ACGT 2 cut(s) 36, 241
HpyCH4V TGCA 3 cut(s) 150, 246, 266
HpyF10VI GCNNNNNNNGC 1 cut(s) 159
HpySE526I ACGT 2 cut(s) 36, 241
Hsp92II CATG 2 cut(s) 97, 281
HspAI GCGC 2 cut(s) 162, 164
KpnI GGTACC 1 cut(s) 105
Kzo9I GATC 2 cut(s) 82, 220
LpnPI CCDG 5 cut(s) 32, 154, 239, 279, 325
Lsp1109I GCAGC 2 cut(s) 162, 278
LweI GCATC 1 cut(s) 102
MaeI CTAG 1 cut(s) 364
MaeII ACGT 2 cut(s) 36, 241
MaeIII GTNAC 1 cut(s) 143
MalI GATC 2 cut(s) 84, 222
MboI GATC 2 cut(s) 82, 220
MboII GAAGA 2 cut(s) 26, 217
MflI RGATCY 1 cut(s) 220
MluCI AATT 2 cut(s) 173, 289
MnlI CCTC 1 cut(s) 362
MseI TTAA 1 cut(s) 51
MslI CAYNNNNRTG 1 cut(s) 110
Mva1269I GAATGC 1 cut(s) 269
MvnI CGCG 2 cut(s) 162, 164
MwoI GCNNNNNNNGC 1 cut(s) 159
NdeII GATC 2 cut(s) 82, 220
NlaIII CATG 2 cut(s) 97, 281
NlaIV GGNNCC 1 cut(s) 103
PauI GCGCGC 1 cut(s) 162
PctI GAATGC 1 cut(s) 269
Pfl23II CGTACG 1 cut(s) 157
PkrI GCNGC 2 cut(s) 152, 268
PspLI CGTACG 1 cut(s) 157
PspN4I GGNNCC 1 cut(s) 103
PstI CTGCAG 1 cut(s) 152
PstNI CAGNNNCTG 1 cut(s) 147
PsuI RGATCY 1 cut(s) 220
PteI GCGCGC 1 cut(s) 162
RsaI GTAC 3 cut(s) 103, 159, 240
RsaNI GTAC 3 cut(s) 102, 158, 239
RseI CAYNNNNRTG 1 cut(s) 110
SaqAI TTAA 1 cut(s) 51
SatI GCNGC 2 cut(s) 151, 267
Sau3AI GATC 2 cut(s) 82, 220
SetI ASST 7 cut(s) 21, 39, 196, 244, 261, 286, 332
SfaNI GCATC 1 cut(s) 102
SfcI CTRYAG 1 cut(s) 148
SmiMI CAYNNNNRTG 1 cut(s) 110
SmlI CTYRAG 1 cut(s) 254
SmoI CTYRAG 1 cut(s) 254
Sse9I AATT 2 cut(s) 173, 289
SsiI CCGC 1 cut(s) 47
SspMI CTAG 1 cut(s) 364
TaaI ACNGT 1 cut(s) 157
TaiI ACGT 2 cut(s) 39, 244
TaqI TCGA 1 cut(s) 85
TasI AATT 2 cut(s) 173, 289
Tru1I TTAA 1 cut(s) 51
Tru9I TTAA 1 cut(s) 51
TseI GCWGC 2 cut(s) 150, 266
TspDTI ATGAA 3 cut(s) 17, 27, 110
XapI RAATTY 1 cut(s) 173
XspI CTAG 1 cut(s) 364
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.