Cytochrome p450
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 1353 |
| Acc16I | TGCGCA | 1 cut(s) | 1530 |
| Acc36I | ACCTGC | 1 cut(s) | 2025 |
| AccB1I | GGYRCC | 1 cut(s) | 397 |
| AccII | CGCG | 5 cut(s) | 154, 480, 739, 1702, 1731 |
| AccIII | TCCGGA | 1 cut(s) | 576 |
| AciI | CCGC | 4 cut(s) | 152, 983, 1145, 1184 |
| AclWI | GGATC | 3 cut(s) | 1208, 1280, 1750 |
| AcoI | YGGCCR | 2 cut(s) | 1390, 1974 |
| AcsI | RAATTY | 5 cut(s) | 365, 1450, 1589, 1609, 1944 |
| AcuI | CTGAAG | 2 cut(s) | 48, 869 |
| AcyI | GRCGYC | 1 cut(s) | 398 |
| AfaI | GTAC | 5 cut(s) | 197, 626, 965, 1077, 1316 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 170, 1017, 1141 |
| AflIII | ACRYGT | 2 cut(s) | 1509, 1700 |
| AgsI | TTSAA | 6 cut(s) | 540, 679, 812, 1141, 1433, 1827 |
| AjiI | CACGTC | 1 cut(s) | 1397 |
| AjnI | CCWGG | 2 cut(s) | 1405, 1480 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 338, 370 |
| Alw21I | GWGCWC | 1 cut(s) | 1461 |
| Alw26I | GTCTC | 5 cut(s) | 286, 746, 1657, 1709, 1811 |
| Alw44I | GTGCAC | 1 cut(s) | 1457 |
| AlwI | GGATC | 3 cut(s) | 1208, 1280, 1750 |
| Aor13HI | TCCGGA | 1 cut(s) | 576 |
| AoxI | GGCC | 4 cut(s) | 236, 1242, 1390, 1974 |
| ApaLI | GTGCAC | 1 cut(s) | 1457 |
| ApeKI | GCWGC | 4 cut(s) | 80, 160, 296, 456 |
| ApoI | RAATTY | 5 cut(s) | 365, 1450, 1589, 1609, 1944 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 1374 |
| AspA2I | CCTAGG | 1 cut(s) | 1196 |
| AspLEI | GCGC | 5 cut(s) | 400, 471, 482, 1531, 1883 |
| AspS9I | GGNCC | 4 cut(s) | 111, 236, 618, 1501 |
| AsuHPI | GGTGA | 5 cut(s) | 109, 173, 343, 719, 1159 |
| AvaII | GGWCC | 3 cut(s) | 111, 618, 1501 |
| AvrII | CCTAGG | 1 cut(s) | 1196 |
| BaeGI | GKGCMC | 1 cut(s) | 1461 |
| BalI | TGGCCA | 1 cut(s) | 1976 |
| BanI | GGYRCC | 1 cut(s) | 397 |
| BauI | CACGAG | 1 cut(s) | 275 |
| BbsI | GAAGAC | 1 cut(s) | 320 |
| Bbv12I | GWGCWC | 1 cut(s) | 1461 |
| BbvCI | CCTCAGC | 1 cut(s) | 291 |
| BbvI | GCAGC | 4 cut(s) | 92, 147, 283, 468 |
| BccI | CCATC | 6 cut(s) | 145, 626, 818, 824, 1611, 1734 |
| BceAI | ACGGC | 1 cut(s) | 245 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 1383, 1417 |
| BciT130I | CCWGG | 2 cut(s) | 1407, 1482 |
| BclI | TGATCA | 2 cut(s) | 12, 510 |
| BcoDI | GTCTC | 5 cut(s) | 286, 746, 1657, 1709, 1811 |
| BfaI | CTAG | 6 cut(s) | 188, 1013, 1047, 1197, 1505, 1814 |
| BfoI | RGCGCY | 1 cut(s) | 401 |
| BfuAI | ACCTGC | 1 cut(s) | 2025 |
| BisI | GCNGC | 5 cut(s) | 81, 161, 297, 457, 984 |
| BlnI | CCTAGG | 1 cut(s) | 1196 |
| BlsI | GCNGC | 5 cut(s) | 82, 162, 298, 458, 985 |
| Bme1390I | CCNGG | 2 cut(s) | 1407, 1482 |
| Bme18I | GGWCC | 3 cut(s) | 111, 618, 1501 |
| BmgBI | CACGTC | 1 cut(s) | 1397 |
| BmgT120I | GGNCC | 4 cut(s) | 111, 236, 618, 1501 |
| BmiI | GGNNCC | 2 cut(s) | 399, 619 |
| BmrFI | CCNGG | 2 cut(s) | 1407, 1482 |
| BmsI | GCATC | 8 cut(s) | 237, 401, 698, 705, 745, 936, 1051, 1864 |
| BpiI | GAAGAC | 1 cut(s) | 320 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 284, 316 |
| Bpu10I | CCTNAGC | 1 cut(s) | 291 |
| BpuEI | CTTGAG | 1 cut(s) | 1354 |
| BsaBI | GATNNNNATC | 1 cut(s) | 1788 |
| BsaHI | GRCGYC | 1 cut(s) | 398 |
| BsaI | GGTCTC | 2 cut(s) | 286, 1811 |
| BsaJI | CCNNGG | 5 cut(s) | 303, 669, 942, 1196, 1405 |
| BsaWI | WCCGGW | 1 cut(s) | 576 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 170, 1017, 1141 |
| Bse1I | ACTGG | 3 cut(s) | 81, 269, 1871 |
| Bse3DI | GCAATG | 1 cut(s) | 1475 |
| Bse8I | GATNNNNATC | 1 cut(s) | 1788 |
| BseAI | TCCGGA | 1 cut(s) | 576 |
| BseBI | CCWGG | 2 cut(s) | 1407, 1482 |
| BseDI | CCNNGG | 5 cut(s) | 303, 669, 942, 1196, 1405 |
| BseGI | GGATG | 6 cut(s) | 93, 760, 829, 1042, 1120, 1171 |
| BseJI | GATNNNNATC | 1 cut(s) | 1788 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 170, 1017, 1141 |
| BseMI | GCAATG | 1 cut(s) | 1475 |
| BseMII | CTCAG | 4 cut(s) | 282, 443, 757, 1670 |
| BseNI | ACTGG | 3 cut(s) | 81, 269, 1871 |
| BseRI | GAGGAG | 1 cut(s) | 1325 |
| BseSI | GKGCMC | 1 cut(s) | 1461 |
| BseXI | GCAGC | 4 cut(s) | 92, 147, 283, 468 |
| Bsh1236I | CGCG | 5 cut(s) | 154, 480, 739, 1702, 1731 |
| Bsh1285I | CGRYCG | 1 cut(s) | 919 |
| BshFI | GGCC | 4 cut(s) | 238, 1244, 1392, 1976 |
| BshNI | GGYRCC | 1 cut(s) | 397 |
| BsiEI | CGRYCG | 1 cut(s) | 919 |
| BsiHKAI | GWGCWC | 1 cut(s) | 1461 |
| BsiSI | CCGG | 2 cut(s) | 577, 1322 |
| BslFI | GGGAC | 1 cut(s) | 631 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 170, 1017, 1141 |
| BsmAI | GTCTC | 5 cut(s) | 286, 746, 1657, 1709, 1811 |
| BsmBI | CGTCTC | 2 cut(s) | 746, 1709 |
| BsmFI | GGGAC | 1 cut(s) | 631 |
| BsmI | GAATGC | 2 cut(s) | 1134, 1270 |
| BsnI | GGCC | 4 cut(s) | 238, 1244, 1392, 1976 |
| Bso31I | GGTCTC | 2 cut(s) | 286, 1811 |
| Bsp1286I | GDGCHC | 1 cut(s) | 1461 |
| Bsp13I | TCCGGA | 1 cut(s) | 576 |
| Bsp143I | GATC | 9 cut(s) | 12, 348, 423, 510, 769, 916, 1200, 1285, 1742 |
| Bsp19I | CCATGG | 1 cut(s) | 669 |
| Bsp68I | TCGCGA | 1 cut(s) | 1731 |
| BspACI | CCGC | 4 cut(s) | 152, 983, 1145, 1184 |
| BspANI | GGCC | 4 cut(s) | 238, 1244, 1392, 1976 |
| BspCNI | CTCAG | 4 cut(s) | 283, 444, 756, 1669 |
| BspEI | TCCGGA | 1 cut(s) | 576 |
| BspFNI | CGCG | 5 cut(s) | 154, 480, 739, 1702, 1731 |
| BspHI | TCATGA | 3 cut(s) | 243, 309, 522 |
| BspLI | GGNNCC | 2 cut(s) | 399, 619 |
| BspMI | ACCTGC | 1 cut(s) | 2025 |
| BspPI | GGATC | 3 cut(s) | 1208, 1280, 1750 |
| BspQI | GCTCTTC | 1 cut(s) | 1167 |
| BspT107I | GGYRCC | 1 cut(s) | 397 |
| BspTNI | GGTCTC | 2 cut(s) | 286, 1811 |
| BsrDI | GCAATG | 1 cut(s) | 1475 |
| BsrI | ACTGG | 3 cut(s) | 81, 269, 1871 |
| BssECI | CCNNGG | 5 cut(s) | 303, 669, 942, 1196, 1405 |
| BssMI | GATC | 9 cut(s) | 12, 348, 423, 510, 769, 916, 1200, 1285, 1742 |
| BssNI | GRCGYC | 1 cut(s) | 398 |
| BssSI | CACGAG | 1 cut(s) | 275 |
| BssT1I | CCWWGG | 3 cut(s) | 669, 942, 1196 |
| Bst2BI | CACGAG | 1 cut(s) | 275 |
| Bst2UI | CCWGG | 2 cut(s) | 1407, 1482 |
| Bst4CI | ACNGT | 5 cut(s) | 805, 1087, 1191, 1620, 1682 |
| Bst6I | CTCTTC | 3 cut(s) | 486, 1167, 1428 |
| BstACI | GRCGYC | 1 cut(s) | 398 |
| BstC8I | GCNNGC | 6 cut(s) | 266, 666, 903, 988, 1246, 1390 |
| BstDEI | CTNAG | 7 cut(s) | 291, 452, 743, 1366, 1656, 1749, 2017 |
| BstDSI | CCRYGG | 1 cut(s) | 669 |
| BstF5I | GGATG | 6 cut(s) | 93, 760, 829, 1042, 1120, 1171 |
| BstFNI | CGCG | 5 cut(s) | 154, 480, 739, 1702, 1731 |
| BstH2I | RGCGCY | 1 cut(s) | 401 |
| BstHHI | GCGC | 5 cut(s) | 400, 471, 482, 1531, 1883 |
| BstKTI | GATC | 9 cut(s) | 15, 351, 426, 513, 772, 919, 1203, 1288, 1745 |
| BstMAI | GTCTC | 5 cut(s) | 286, 746, 1657, 1709, 1811 |
| BstMBI | GATC | 9 cut(s) | 12, 348, 423, 510, 769, 916, 1200, 1285, 1742 |
| BstMCI | CGRYCG | 1 cut(s) | 919 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 160, 296, 477, 1039, 1192 |
| BstNI | CCWGG | 2 cut(s) | 1407, 1482 |
| BstNSI | RCATGY | 3 cut(s) | 268, 1513, 1535 |
| BstSCI | CCNGG | 2 cut(s) | 1405, 1480 |
| BstSLI | GKGCMC | 1 cut(s) | 1461 |
| BstUI | CGCG | 5 cut(s) | 154, 480, 739, 1702, 1731 |
| BstV1I | GCAGC | 4 cut(s) | 92, 147, 283, 468 |
| BstV2I | GAAGAC | 1 cut(s) | 320 |
| BstX2I | RGATCY | 3 cut(s) | 1200, 1285, 1742 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 1252 |
| BstYI | RGATCY | 3 cut(s) | 1200, 1285, 1742 |
| BsuRI | GGCC | 4 cut(s) | 238, 1244, 1392, 1976 |
| BtgI | CCRYGG | 1 cut(s) | 669 |
| BtgZI | GCGATG | 5 cut(s) | 123, 188, 645, 843, 1712 |
| BtrI | CACGTC | 1 cut(s) | 1397 |
| BtsCI | GGATG | 6 cut(s) | 93, 760, 829, 1042, 1120, 1171 |
| BtsIMutI | CAGTG | 3 cut(s) | 751, 990, 1678 |
| BtuMI | TCGCGA | 1 cut(s) | 1731 |
| BveI | ACCTGC | 1 cut(s) | 2025 |
| Cac8I | GCNNGC | 6 cut(s) | 266, 666, 903, 988, 1246, 1390 |
| CciI | TCATGA | 3 cut(s) | 243, 309, 522 |
| CfoI | GCGC | 5 cut(s) | 400, 471, 482, 1531, 1883 |
| Cfr13I | GGNCC | 4 cut(s) | 111, 236, 618, 1501 |
| CseI | GACGC | 3 cut(s) | 589, 728, 1691 |
| Csp6I | GTAC | 5 cut(s) | 196, 625, 964, 1076, 1315 |
| CviQI | GTAC | 5 cut(s) | 196, 625, 964, 1076, 1315 |
| DdeI | CTNAG | 7 cut(s) | 291, 452, 743, 1366, 1656, 1749, 2017 |
| DinI | GGCGCC | 1 cut(s) | 399 |
| DpnI | GATC | 9 cut(s) | 14, 350, 425, 512, 771, 918, 1202, 1287, 1744 |
| DpnII | GATC | 9 cut(s) | 12, 348, 423, 510, 769, 916, 1200, 1285, 1742 |
| EaeI | YGGCCR | 2 cut(s) | 1390, 1974 |
| Eam1104I | CTCTTC | 3 cut(s) | 486, 1167, 1428 |
| EarI | CTCTTC | 3 cut(s) | 486, 1167, 1428 |
| Eco130I | CCWWGG | 3 cut(s) | 669, 942, 1196 |
| Eco31I | GGTCTC | 2 cut(s) | 286, 1811 |
| Eco32I | GATATC | 1 cut(s) | 571 |
| Eco47I | GGWCC | 3 cut(s) | 111, 618, 1501 |
| Eco57I | CTGAAG | 2 cut(s) | 48, 869 |
| EcoO109I | RGGNCCY | 1 cut(s) | 1501 |
| EcoRII | CCWGG | 2 cut(s) | 1405, 1480 |
| EcoRV | GATATC | 1 cut(s) | 571 |
| EcoT14I | CCWWGG | 3 cut(s) | 669, 942, 1196 |
| EcoT22I | ATGCAT | 1 cut(s) | 1270 |
| EgeI | GGCGCC | 1 cut(s) | 399 |
| EheI | GGCGCC | 1 cut(s) | 399 |
| ErhI | CCWWGG | 3 cut(s) | 669, 942, 1196 |
| Esp3I | CGTCTC | 2 cut(s) | 746, 1709 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 338, 370 |
| FaqI | GGGAC | 1 cut(s) | 631 |
| FauNDI | CATATG | 3 cut(s) | 434, 819, 1756 |
| FbaI | TGATCA | 2 cut(s) | 12, 510 |
| Fnu4HI | GCNGC | 5 cut(s) | 81, 161, 297, 457, 984 |
| FokI | GGATG | 6 cut(s) | 80, 767, 836, 1029, 1127, 1158 |
| Fsp4HI | GCNGC | 5 cut(s) | 81, 161, 297, 457, 984 |
| FspAI | RTGCGCAY | 1 cut(s) | 1530 |
| FspBI | CTAG | 6 cut(s) | 188, 1013, 1047, 1197, 1505, 1814 |
| FspI | TGCGCA | 1 cut(s) | 1530 |
| GlaI | GCGC | 5 cut(s) | 399, 470, 481, 1530, 1882 |
| GluI | GCNGC | 5 cut(s) | 81, 161, 297, 457, 984 |
| HaeII | RGCGCY | 1 cut(s) | 401 |
| HaeIII | GGCC | 4 cut(s) | 238, 1244, 1392, 1976 |
| HapII | CCGG | 2 cut(s) | 577, 1322 |
| HgaI | GACGC | 3 cut(s) | 589, 728, 1691 |
| HhaI | GCGC | 5 cut(s) | 400, 471, 482, 1531, 1883 |
| Hin1I | GRCGYC | 1 cut(s) | 398 |
| Hin6I | GCGC | 5 cut(s) | 398, 469, 480, 1529, 1881 |
| HinP1I | GCGC | 5 cut(s) | 398, 469, 480, 1529, 1881 |
| HincII | GTYRAC | 1 cut(s) | 1986 |
| HindII | GTYRAC | 1 cut(s) | 1986 |
| HindIII | AAGCTT | 1 cut(s) | 40 |
| HinfI | GANTC | 1 cut(s) | 1517 |
| HpaI | GTTAAC | 1 cut(s) | 1986 |
| HpaII | CCGG | 2 cut(s) | 577, 1322 |
| HphI | GGTGA | 5 cut(s) | 109, 173, 343, 719, 1159 |
| Hpy166II | GTNNAC | 4 cut(s) | 868, 1020, 1459, 1986 |
| Hpy188I | TCNGA | 9 cut(s) | 173, 260, 304, 453, 888, 1030, 1516, 1659, 1742 |
| Hpy8I | GTNNAC | 4 cut(s) | 868, 1020, 1459, 1986 |
| Hpy99I | CGWCG | 2 cut(s) | 289, 1398 |
| HpyAV | CCTTC | 8 cut(s) | 124, 156, 188, 221, 364, 893, 1135, 1874 |
| HpyCH4III | ACNGT | 5 cut(s) | 805, 1087, 1191, 1620, 1682 |
| HpyCH4IV | ACGT | 5 cut(s) | 594, 870, 897, 1104, 1396 |
| HpyCH4V | TGCA | 9 cut(s) | 49, 381, 927, 1066, 1132, 1268, 1459, 1490, 2034 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 160, 296, 477, 1039, 1192 |
| HpyF3I | CTNAG | 7 cut(s) | 291, 452, 743, 1366, 1656, 1749, 2017 |
| HpySE526I | ACGT | 5 cut(s) | 594, 870, 897, 1104, 1396 |
| Hsp92I | GRCGYC | 1 cut(s) | 398 |
| HspAI | GCGC | 5 cut(s) | 398, 469, 480, 1529, 1881 |
| KasI | GGCGCC | 1 cut(s) | 397 |
| Kpn2I | TCCGGA | 1 cut(s) | 576 |
| Ksp22I | TGATCA | 2 cut(s) | 12, 510 |
| KspAI | GTTAAC | 1 cut(s) | 1986 |
| Kzo9I | GATC | 9 cut(s) | 12, 348, 423, 510, 769, 916, 1200, 1285, 1742 |
| LguI | GCTCTTC | 1 cut(s) | 1167 |
| LmnI | GCTCC | 3 cut(s) | 7, 212, 255 |
| Lsp1109I | GCAGC | 4 cut(s) | 92, 147, 283, 468 |
| LweI | GCATC | 8 cut(s) | 237, 401, 698, 705, 745, 936, 1051, 1864 |
| MaeI | CTAG | 6 cut(s) | 188, 1013, 1047, 1197, 1505, 1814 |
| MaeII | ACGT | 5 cut(s) | 594, 870, 897, 1104, 1396 |
| MaeIII | GTNAC | 5 cut(s) | 607, 707, 1105, 1340, 1682 |
| MalI | GATC | 9 cut(s) | 14, 350, 425, 512, 771, 918, 1202, 1287, 1744 |
| MboI | GATC | 9 cut(s) | 12, 348, 423, 510, 769, 916, 1200, 1285, 1742 |
| MflI | RGATCY | 3 cut(s) | 1200, 1285, 1742 |
| MhlI | GDGCHC | 1 cut(s) | 1461 |
| MlsI | TGGCCA | 1 cut(s) | 1976 |
| MluI | ACGCGT | 1 cut(s) | 1700 |
| MluNI | TGGCCA | 1 cut(s) | 1976 |
| Mly113I | GGCGCC | 1 cut(s) | 398 |
| MmeI | TCCRAC | 1 cut(s) | 360 |
| Mox20I | TGGCCA | 1 cut(s) | 1976 |
| Mph1103I | ATGCAT | 1 cut(s) | 1270 |
| MroI | TCCGGA | 1 cut(s) | 576 |
| MroXI | GAANNNNTTC | 1 cut(s) | 1374 |
| MscI | TGGCCA | 1 cut(s) | 1976 |
| MslI | CAYNNNNRTG | 4 cut(s) | 437, 588, 822, 1680 |
| Msp20I | TGGCCA | 1 cut(s) | 1976 |
| MspI | CCGG | 2 cut(s) | 577, 1322 |
| MspR9I | CCNGG | 2 cut(s) | 1407, 1482 |
| Mva1269I | GAATGC | 2 cut(s) | 1134, 1270 |
| MvaI | CCWGG | 2 cut(s) | 1407, 1482 |
| MvnI | CGCG | 5 cut(s) | 154, 480, 739, 1702, 1731 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 160, 296, 477, 1039, 1192 |
| NarI | GGCGCC | 1 cut(s) | 398 |
| NcoI | CCATGG | 1 cut(s) | 669 |
| NdeI | CATATG | 3 cut(s) | 434, 819, 1756 |
| NdeII | GATC | 9 cut(s) | 12, 348, 423, 510, 769, 916, 1200, 1285, 1742 |
| NlaIV | GGNNCC | 2 cut(s) | 399, 619 |
| NmuCI | GTSAC | 3 cut(s) | 707, 1340, 1682 |
| NruI | TCGCGA | 1 cut(s) | 1731 |
| NsbI | TGCGCA | 1 cut(s) | 1530 |
| NsiI | ATGCAT | 1 cut(s) | 1270 |
| NspI | RCATGY | 3 cut(s) | 268, 1513, 1535 |
| PaeI | GCATGC | 1 cut(s) | 268 |
| PagI | TCATGA | 3 cut(s) | 243, 309, 522 |
| PciI | ACATGT | 1 cut(s) | 1509 |
| PciSI | GCTCTTC | 1 cut(s) | 1167 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 211 |
| PctI | GAATGC | 2 cut(s) | 1134, 1270 |
| PdmI | GAANNNNTTC | 1 cut(s) | 1374 |
| PfeI | GAWTC | 1 cut(s) | 1517 |
| PflFI | GACNNNGTC | 1 cut(s) | 1024 |
| PkrI | GCNGC | 5 cut(s) | 82, 162, 298, 458, 985 |
| Ple19I | CGATCG | 1 cut(s) | 919 |
| PluTI | GGCGCC | 1 cut(s) | 401 |
| PpuMI | RGGWCCY | 1 cut(s) | 1501 |
| PscI | ACATGT | 1 cut(s) | 1509 |
| PsiI | TTATAA | 1 cut(s) | 1353 |
| Psp5II | RGGWCCY | 1 cut(s) | 1501 |
| Psp6I | CCWGG | 2 cut(s) | 1405, 1480 |
| PspGI | CCWGG | 2 cut(s) | 1405, 1480 |
| PspN4I | GGNNCC | 2 cut(s) | 399, 619 |
| PspPI | GGNCC | 4 cut(s) | 111, 236, 618, 1501 |
| PspPPI | RGGWCCY | 1 cut(s) | 1501 |
| PsuI | RGATCY | 3 cut(s) | 1200, 1285, 1742 |
| PsyI | GACNNNGTC | 1 cut(s) | 1024 |
| PvuI | CGATCG | 1 cut(s) | 919 |
| RruI | TCGCGA | 1 cut(s) | 1731 |
| RsaI | GTAC | 5 cut(s) | 197, 626, 965, 1077, 1316 |
| RsaNI | GTAC | 5 cut(s) | 196, 625, 964, 1076, 1315 |
| RseI | CAYNNNNRTG | 4 cut(s) | 437, 588, 822, 1680 |
| SapI | GCTCTTC | 1 cut(s) | 1167 |
| SatI | GCNGC | 5 cut(s) | 81, 161, 297, 457, 984 |
| Sau3AI | GATC | 9 cut(s) | 12, 348, 423, 510, 769, 916, 1200, 1285, 1742 |
| Sau96I | GGNCC | 4 cut(s) | 111, 236, 618, 1501 |
| ScrFI | CCNGG | 2 cut(s) | 1407, 1482 |
| SduI | GDGCHC | 1 cut(s) | 1461 |
| SfaNI | GCATC | 8 cut(s) | 237, 401, 698, 705, 745, 936, 1051, 1864 |
| SfoI | GGCGCC | 1 cut(s) | 399 |
| SinI | GGWCC | 3 cut(s) | 111, 618, 1501 |
| SmiMI | CAYNNNNRTG | 4 cut(s) | 437, 588, 822, 1680 |
| SmlI | CTYRAG | 1 cut(s) | 1333 |
| SmoI | CTYRAG | 1 cut(s) | 1333 |
| SphI | GCATGC | 1 cut(s) | 268 |
| SsiI | CCGC | 4 cut(s) | 152, 983, 1145, 1184 |
| SspDI | GGCGCC | 1 cut(s) | 397 |
| SspI | AATATT | 2 cut(s) | 68, 703 |
| SspMI | CTAG | 6 cut(s) | 188, 1013, 1047, 1197, 1505, 1814 |
| StyD4I | CCNGG | 2 cut(s) | 1405, 1480 |
| StyI | CCWWGG | 3 cut(s) | 669, 942, 1196 |
| TaaI | ACNGT | 5 cut(s) | 805, 1087, 1191, 1620, 1682 |
| TaiI | ACGT | 5 cut(s) | 597, 873, 900, 1107, 1399 |
| TaqI | TCGA | 5 cut(s) | 214, 915, 919, 1467, 1782 |
| TatI | WGTACW | 1 cut(s) | 624 |
| TauI | GCSGC | 1 cut(s) | 986 |
| TfiI | GAWTC | 1 cut(s) | 1517 |
| TscAI | CASTG | 3 cut(s) | 751, 997, 1685 |
| TseFI | GTSAC | 3 cut(s) | 707, 1340, 1682 |
| TseI | GCWGC | 4 cut(s) | 80, 160, 296, 456 |
| Tsp45I | GTSAC | 3 cut(s) | 707, 1340, 1682 |
| TspDTI | ATGAA | 3 cut(s) | 326, 539, 1070 |
| TspGWI | ACGGA | 4 cut(s) | 1115, 1124, 1368, 1526 |
| TspRI | CASTG | 3 cut(s) | 751, 997, 1685 |
| Tth111I | GACNNNGTC | 1 cut(s) | 1024 |
| VneI | GTGCAC | 1 cut(s) | 1457 |
| VpaK11BI | GGWCC | 3 cut(s) | 111, 618, 1501 |
| XapI | RAATTY | 5 cut(s) | 365, 1450, 1589, 1609, 1944 |
| XceI | RCATGY | 3 cut(s) | 268, 1513, 1535 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 726 |
| XmaJI | CCTAGG | 1 cut(s) | 1196 |
| XmnI | GAANNNNTTC | 1 cut(s) | 1374 |
| XspI | CTAG | 6 cut(s) | 188, 1013, 1047, 1197, 1505, 1814 |
| Zsp2I | ATGCAT | 1 cut(s) | 1270 |