Rh1CG223800

Cytochrome p450

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
Physical Location & Seq
Forward (+)
47415878 .. 47420020
4143 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG223800.1

Sequence Viewer

Length: 633 bp
ATGCAAGACACACGGAGAATGAAAAAAGCTGAAAGATGGTCTTCTCCTCATACCAACTCATCATCAGTTTCAGTACCACCATCTCCACCAAAGCTTCCTGTGATCGGAAACCTCCACCGGCTAGGGTTACTCCCTCACCGCTCTCTTCAAACTCTAGCGCAACGCCATGGGCCTGATCTAATGCTACTCCATCTCGGAAGCAGGCCTGTGCTTGTTGTCTCAACAGCTGAGGCTGCCTCCGAGATCTTCAAAACCCATGACATTGCATTCTCGGACAGACCCAAGTTTGTCTTCTTTCAGAAGGTTCTCTACAATTACAAGGACATAATATCGGCACCTTATGGTGAGTATTGGAGGCAGATGAGAAGTGTCTGTGTCTTAAATCTTTTGAGCAACAAAAGGGTTCGTTCTTTTGGCACCGTGAGACTAGAGGAAACGATACTCATGATGAGCAACAAAGAACAGTCTTGTAGGGAGACATCTTCCTCCTCCTCATCAACATCGTCGGTTTTAAATTTAAGCGATATATTTATGAAGCTTACTAATGTTGTCATTTGTAGAGTTGCTATGGGTAGGAAGTACAGTGATCTCGGGGAAGGTCGTGGGAGGTTGTTTATGGATCTTTTTGTATAG

Protein Analysis

210

Amino Acids

23.79

Weight (kDa)

10.01

Isoelectric Point (pI)

54.51

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 26 - 200 1.1e-19 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000061)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G48270 AT3G48280 AT3G48290 AT3G48290 AT3G48300 AT3G48300 AT3G48310 AT3G48320 AT4G20235 AT4G20235
fragaria_vesca FvH4_2g12910 FvH4_2g12910 FvH4_2g12910 FvH4_2g12910 FvH4_2g12910 FvH4_2g36190 FvH4_3g14160 FvH4_3g14210 FvH4_3g14260 FvH4_3g14260 FvH4_3g21100 FvH4_3g21380 FvH4_4g24460 FvH4_4g24500 FvH4_5g06571 FvH4_5g06571 FvH4_5g06571 FvH4_5g06571 FvH4_5g06572 FvH4_5g06573 FvH4_5g06574 FvH4_5g06575 FvH4_5g06576 FvH4_5g06577 FvH4_5g06577 FvH4_5g07540 FvH4_5g07550 FvH4_5g07560 FvH4_5g07570 FvH4_5g29491 FvH4_5g29492 FvH4_6g23870 FvH4_6g23880 FvH4_6g26870 FvH4_7g11861 FvH4_7g11862 FvH4_7g13050 FvH4_7g13060 FvH4_7g13080 FvH4_7g13080 FvH4_7g22630 FvH4_7g22650 FvH4_7g22651 FvH4_7g23020
malus_domestica MD03G1207400.v1.1 MD03G1214800.v1.1 MD03G1218500.v1.1 MD06G1163100.v1.1 MD06G1163300.v1.1 MD06G1163400.v1.1 MD06G1163500.v1.1 MD06G1163600.v1.1 MD06G1163800.v1.1 MD06G1164000.v1.1 MD06G1164100.v1.1 MD06G1224400.v1.1 MD08G1222800.v1.1 MD08G1222900.v1.1 MD08G1223100.v1.1 MD11G1091500.v1.1 MD11G1091800.v1.1 MD14G1163200.v1.1 MD14G1169000.v1.1 MD15G1207200.v1.1 MD15G1207300.v1.1 MD17G1259400.v1.1
prunus_persica Prupe.4G198100_v2.0.a1 Prupe.4G199100_v2.0.a1 Prupe.4G199400_v2.0.a1 Prupe.4G199800_v2.0.a1 Prupe.4G225200_v2.0.a1 Prupe.4G239100_v2.0.a1 Prupe.5G156600_v2.0.a1 Prupe.5G163500_v2.0.a1 Prupe.7G209500_v2.0.a1 Prupe.I003400_v2.0.a1
pyrus_communis pycom03g16340 pycom06g14600 pycom06g14610 pycom06g14620 pycom06g14630 pycom06g14640 pycom06g14670 pycom06g14690 pycom08g19390 pycom08g19400 pycom08g19410 pycom11g07600 pycom11g07610 pycom11g07620 pycom11g07660 pycom14g13580 pycom14g14080 pycom14g14100 pycom14g14110 pycom15g18380 pycom17g26080
rosa_chinensis RchiOBHm_Chr1g0339441 RchiOBHm_Chr1g0339451 RchiOBHm_Chr1g0352191 RchiOBHm_Chr1g0368221 RchiOBHm_Chr2g0129531 RchiOBHm_Chr2g0129541 RchiOBHm_Chr3g0477631 RchiOBHm_Chr3g0482551 RchiOBHm_Chr3g0482561 RchiOBHm_Chr3g0482571 RchiOBHm_Chr4g0411601 RchiOBHm_Chr4g0422181 RchiOBHm_Chr5g0036661 RchiOBHm_Chr5g0036731 RchiOBHm_Chr6g0274021 RchiOBHm_Chr7g0190921 RchiOBHm_Chr7g0190931 RchiOBHm_Chr7g0190941 RchiOBHm_Chr7g0190951 RchiOBHm_Chr7g0190961 RchiOBHm_Chr7g0190971 RchiOBHm_Chr7g0191001 RchiOBHm_Chr7g0191011 RchiOBHm_Chr7g0191021 RchiOBHm_Chr7g0192181 RchiOBHm_Chr7g0192191 RchiOBHm_Chr7g0192201 RchiOBHm_Chr7g0192221 RchiOBHm_Chr7g0192231 RchiOBHm_Chr7g0192281 RchiOBHm_Chr7g0197311
rosa_laevigata RLG00000003942 RLG00000004345 RLG00000004379 RLG00000004383 RLG00000004384 RLG00000004385 RLG00000004387 RLG00000004388 RLG00000004389 RLG00000004480 RLG00000004481 RLG00000004482 RLG00000004483 RLG00000004485 RLG00000008342 RLG00000008401 RLG00000013583 RLG00000017044 RLG00000027229 RLG00000028349 RLG00000028350 RLG00000028353 RLG00000028820 RLG00000033707 RLG00000033710
rosa_multiflora Rmu_co8020340.1_g000001 Rmu_co8096640.1_g000001 Rmu_co8214930.1_g000001 Rmu_co8223272.1_g000001 Rmu_co8282535.1_g000001 Rmu_co8343567.1_g000001 Rmu_co8404191.1_g000001 Rmu_co8455157.1_g000001 Rmu_sc0000062.1_g000028 Rmu_sc0000082.1_g000091 Rmu_sc0000509.1_g000017 Rmu_sc0000775.1_g000001 Rmu_sc0000999.1_g000034 Rmu_sc0001559.1_g000004 Rmu_sc0001559.1_g000009 Rmu_sc0002164.1_g000001 Rmu_sc0002164.1_g000005 Rmu_sc0002164.1_g000007 Rmu_sc0002164.1_g000008 Rmu_sc0002164.1_g000009 Rmu_sc0002164.1_g000019 Rmu_sc0002247.1_g000009 Rmu_sc0002373.1_g000002 Rmu_sc0002373.1_g000003 Rmu_sc0002944.1_g000059 Rmu_sc0003930.1_g000004 Rmu_sc0004958.1_g000001 Rmu_sc0005197.1_g000014 Rmu_sc0005898.1_g000008 Rmu_sc0005898.1_g000009 Rmu_sc0005898.1_g000015 Rmu_sc0006059.1_g000004 Rmu_sc0006059.1_g000010 Rmu_sc0006903.1_g000007 Rmu_sc0006903.1_g000008 Rmu_sc0006968.1_g000001 Rmu_sc0011009.1_g000009 Rmu_sc0022852.1_g000002 Rmu_sc0033854.1_g000001 Rmu_ssc0000421.1_g000057 Rmu_ssc0000421.1_g000067 Rmu_ssc0000421.1_g000069 Rmu_ssc0000421.1_g000072 Rmu_ssc0000421.1_g000081 Rmu_ssc0000421.1_g000086
rosa_roxburghii Rroxscaffold_158G00443680 Rroxscaffold_158G00443710 Rroxscaffold_158G00443720 Rroxscaffold_158G00443740 Rroxscaffold_1G00034950 Rroxscaffold_1G00044240 Rroxscaffold_1G00044270 Rroxscaffold_3G00241380 Rroxscaffold_3G00247000 Rroxscaffold_3G00263120 Rroxscaffold_3G00263150 Rroxscaffold_3G00263160 Rroxscaffold_3G00263170 Rroxscaffold_3G00263180 Rroxscaffold_3G00263190 Rroxscaffold_3G00263210 Rroxscaffold_3G00263230 Rroxscaffold_3G00263260 Rroxscaffold_3G00264110 Rroxscaffold_3G00264130 Rroxscaffold_3G00264160 Rroxscaffold_3G00264180 Rroxscaffold_3G00264200 Rroxscaffold_4G00288750 Rroxscaffold_4G00303110 Rroxscaffold_4G00303120 Rroxscaffold_4G00322280 Rroxscaffold_5G00356200 Rroxscaffold_6G00399150 Rroxscaffold_6G00399290 Rroxscaffold_7G00194770
rosa_rugosa Rorug01G0225300 Rorug01G0225400 Rorug01G0225800 Rorug01G0226000 Rorug01G0339400 Rorug01G0451500 Rorug03G0196900 Rorug03G0294900 Rorug04G0107500 Rorug04G0107600 Rorug04G0129700 Rorug04G0178000 Rorug05G0144900.1 Rorug05G0145000 Rorug05G0228000 Rorug05G0228600 Rorug06G0078300 Rorug06G0508000 Rorug06G0508100 Rorug06G0508100 Rorug06G0508400 Rorug06G0513400 Rorug07G0000100 Rorug07G0000200 Rorug07G0000300 Rorug07G0000500 Rorug07G0000800
rosa_samantha Rh1BG060400 Rh1BG210300 Rh1BG210700 Rh1BG210800 Rh1BG309800 Rh1CG223800 Rh1CG224200 Rh1CG325200 Rh1DG237000 Rh1DG237400 Rh1DG341600 Rh2DG365700 Rh3AG212500 Rh3AG248400 Rh3CG239800 Rh3DG239300 Rh4AG169300 Rh4BG166200 Rh4BG240500 Rh4BG240600 Rh4DG163600 Rh5AG249600 Rh5AG249900 Rh5AG250000 Rh5CG283100 Rh5CG283200 Rh5CG283400 Rh5DG259200 Rh5DG259800 Rh6BG197700 Rh6CG197800 Rh6DG189400 Rh7AG114900 Rh7AG115000 Rh7AG115200 Rh7AG115300 Rh7AG115400 Rh7AG115500 Rh7AG123900 Rh7AG124100 Rh7AG124300 Rh7BG117200 Rh7BG117400 Rh7BG118400 Rh7BG125400 Rh7BG125600 Rh7BG125700 Rh7BG125800 Rh7BG125900 Rh7BG126000 Rh7BG126400 Rh7BG126600 Rh7BG126700 Rh7BG166200 Rh7DG118600 Rh7DG118700 Rh7DG118900 Rh7DG119000 Rh7DG119100 Rh7DG127400 Rh7DG127600 Rh7DG127700 Rh7DG127900 Rh7DG128200
rosa_wichuraiana Rw1G013270 Rw1G020790 Rw2G027890 Rw2G028040 Rw3G019240 Rw4G014070 Rw4G020540 Rw5G021320 Rw5G022970 Rw6G016920 Rw7G010020 Rw7G010040 Rw7G010580 Rw7G010590 Rw7G010600 Rw7G010610 Rw7G010620 Rw7G010630 Rw7G010640 Rw7G010690

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 334, 416
AccBSI CCGCTC 1 cut(s) 141
AciI CCGC 1 cut(s) 139
AclWI GGATC 1 cut(s) 627
AcsI RAATTY 1 cut(s) 514
AfaI GTAC 2 cut(s) 75, 581
AfiI CCNNNNNNNGG 1 cut(s) 104
AgsI TTSAA 2 cut(s) 149, 250
AjuI GAANNNNNNNTTGG 2 cut(s) 275, 307
AluBI AGCT 4 cut(s) 29, 94, 227, 538
AluI AGCT 4 cut(s) 29, 94, 227, 538
Alw26I GTCTC 3 cut(s) 223, 418, 470
AlwI GGATC 1 cut(s) 627
Ama87I CYCGRG 1 cut(s) 590
AoxI GGCC 2 cut(s) 170, 203
ApeKI GCWGC 1 cut(s) 233
ApoI RAATTY 1 cut(s) 514
AspLEI GCGC 1 cut(s) 160
AspS9I GGNCC 1 cut(s) 170
AsuHPI GGTGA 2 cut(s) 128, 356
AvaI CYCGRG 1 cut(s) 590
BanI GGYRCC 2 cut(s) 334, 416
BarI GAAGNNNNNNTAC 2 cut(s) 293, 325
BbsI GAAGAC 2 cut(s) 33, 283
BbvCI CCTCAGC 1 cut(s) 228
BbvI GCAGC 1 cut(s) 220
BccI CCATC 3 cut(s) 30, 88, 198
BcoDI GTCTC 3 cut(s) 223, 418, 470
BfaI CTAG 3 cut(s) 122, 155, 428
BglII AGATCT 1 cut(s) 243
BisI GCNGC 1 cut(s) 234
BlsI GCNGC 1 cut(s) 235
BmeT110I CYCGRG 1 cut(s) 590
BmgT120I GGNCC 1 cut(s) 170
BmiI GGNNCC 2 cut(s) 336, 418
BpiI GAAGAC 2 cut(s) 33, 283
BplI GAGNNNNNCTC 2 cut(s) 221, 253
Bpu10I CCTNAGC 1 cut(s) 228
BsaJI CCNNGG 1 cut(s) 166
Bsc4I CCNNNNNNNGG 1 cut(s) 104
Bse118I RCCGGY 1 cut(s) 117
Bse3DI GCAATG 1 cut(s) 261
BseDI CCNNGG 1 cut(s) 166
BseLI CCNNNNNNNGG 1 cut(s) 104
BseMI GCAATG 1 cut(s) 261
BseMII CTCAG 1 cut(s) 219
BseRI GAGGAG 3 cut(s) 36, 478, 481
BseXI GCAGC 1 cut(s) 220
BshFI GGCC 2 cut(s) 172, 205
BshNI GGYRCC 2 cut(s) 334, 416
BsiHKCI CYCGRG 1 cut(s) 590
BsiSI CCGG 1 cut(s) 118
BslI CCNNNNNNNGG 1 cut(s) 104
BsmAI GTCTC 3 cut(s) 223, 418, 470
BsmI GAATGC 1 cut(s) 266
BsnI GGCC 2 cut(s) 172, 205
BsoBI CYCGRG 1 cut(s) 590
Bsp143I GATC 5 cut(s) 102, 175, 243, 586, 619
Bsp19I CCATGG 1 cut(s) 166
BspACI CCGC 1 cut(s) 139
BspANI GGCC 2 cut(s) 172, 205
BspCNI CTCAG 1 cut(s) 220
BspHI TCATGA 1 cut(s) 444
BspLI GGNNCC 2 cut(s) 336, 418
BspPI GGATC 1 cut(s) 627
BspT107I GGYRCC 2 cut(s) 334, 416
BsrBI CCGCTC 1 cut(s) 141
BsrDI GCAATG 1 cut(s) 261
BsrFI RCCGGY 1 cut(s) 117
BssAI RCCGGY 1 cut(s) 117
BssECI CCNNGG 1 cut(s) 166
BssMI GATC 5 cut(s) 102, 175, 243, 586, 619
BssT1I CCWWGG 1 cut(s) 166
Bst4CI ACNGT 3 cut(s) 421, 465, 584
Bst6I CTCTTC 1 cut(s) 150
BstC8I GCNNGC 1 cut(s) 203
BstDEI CTNAG 1 cut(s) 228
BstDSI CCRYGG 1 cut(s) 166
BstHHI GCGC 1 cut(s) 160
BstKTI GATC 5 cut(s) 105, 178, 246, 589, 622
BstMAI GTCTC 3 cut(s) 223, 418, 470
BstMBI GATC 5 cut(s) 102, 175, 243, 586, 619
BstMWI GCNNNNNNNGC 1 cut(s) 233
BstV1I GCAGC 1 cut(s) 220
BstV2I GAAGAC 2 cut(s) 33, 283
BstX2I RGATCY 2 cut(s) 243, 619
BstYI RGATCY 2 cut(s) 243, 619
BsuRI GGCC 2 cut(s) 172, 205
BtgI CCRYGG 1 cut(s) 166
BtsIMutI CAGTG 1 cut(s) 589
Cac8I GCNNGC 1 cut(s) 203
CciI TCATGA 1 cut(s) 444
CfoI GCGC 1 cut(s) 160
Cfr10I RCCGGY 1 cut(s) 117
Cfr13I GGNCC 1 cut(s) 170
Csp6I GTAC 2 cut(s) 74, 580
CviAII CATG 3 cut(s) 167, 257, 445
CviJI RGCY 8 cut(s) 29, 94, 121, 172, 205, 227, 233, 538
CviKI_1 RGCY 8 cut(s) 29, 94, 121, 172, 205, 227, 233, 538
CviQI GTAC 2 cut(s) 74, 580
DdeI CTNAG 1 cut(s) 228
DpnI GATC 5 cut(s) 104, 177, 245, 588, 621
DpnII GATC 5 cut(s) 102, 175, 243, 586, 619
DraI TTTAAA 1 cut(s) 513
Eam1104I CTCTTC 1 cut(s) 150
EarI CTCTTC 1 cut(s) 150
Eco130I CCWWGG 1 cut(s) 166
Eco147I AGGCCT 1 cut(s) 205
Eco88I CYCGRG 1 cut(s) 590
EcoT14I CCWWGG 1 cut(s) 166
ErhI CCWWGG 1 cut(s) 166
FaeI CATG 3 cut(s) 170, 260, 448
FalI AAGNNNNNCTT 4 cut(s) 25, 57, 275, 307
FatI CATG 3 cut(s) 166, 256, 444
Fnu4HI GCNGC 1 cut(s) 234
Fsp4HI GCNGC 1 cut(s) 234
FspBI CTAG 3 cut(s) 122, 155, 428
GlaI GCGC 1 cut(s) 159
GluI GCNGC 1 cut(s) 234
HaeIII GGCC 2 cut(s) 172, 205
HapII CCGG 1 cut(s) 118
HhaI GCGC 1 cut(s) 160
Hin1II CATG 3 cut(s) 170, 260, 448
Hin6I GCGC 1 cut(s) 158
HinP1I GCGC 1 cut(s) 158
HindIII AAGCTT 2 cut(s) 92, 536
HpaII CCGG 1 cut(s) 118
HphI GGTGA 2 cut(s) 128, 356
Hpy188I TCNGA 5 cut(s) 107, 197, 241, 274, 300
Hpy188III TCNNGA 1 cut(s) 445
Hpy99I CGWCG 1 cut(s) 508
HpyAV CCTTC 2 cut(s) 295, 590
HpyCH4III ACNGT 3 cut(s) 421, 465, 584
HpyCH4V TGCA 2 cut(s) 4, 266
HpyF10VI GCNNNNNNNGC 1 cut(s) 233
HpyF3I CTNAG 1 cut(s) 228
Hsp92II CATG 3 cut(s) 170, 260, 448
HspAI GCGC 1 cut(s) 158
Kzo9I GATC 5 cut(s) 102, 175, 243, 586, 619
LpnPI CCDG 5 cut(s) 111, 131, 186, 187, 219
Lsp1109I GCAGC 1 cut(s) 220
MaeI CTAG 3 cut(s) 122, 155, 428
MaeIII GTNAC 1 cut(s) 126
MalI GATC 5 cut(s) 104, 177, 245, 588, 621
MbiI CCGCTC 1 cut(s) 141
MboI GATC 5 cut(s) 102, 175, 243, 586, 619
MboII GAAGA 5 cut(s) 33, 137, 238, 283, 474
MflI RGATCY 2 cut(s) 243, 619
MluCI AATT 2 cut(s) 313, 514
MseI TTAA 3 cut(s) 380, 512, 518
MspA1I CMGCKG 1 cut(s) 227
MspI CCGG 1 cut(s) 118
Mva1269I GAATGC 1 cut(s) 266
MwoI GCNNNNNNNGC 1 cut(s) 233
NcoI CCATGG 1 cut(s) 166
NdeII GATC 5 cut(s) 102, 175, 243, 586, 619
NlaIII CATG 3 cut(s) 170, 260, 448
NlaIV GGNNCC 2 cut(s) 336, 418
PagI TCATGA 1 cut(s) 444
PceI AGGCCT 1 cut(s) 205
PctI GAATGC 1 cut(s) 266
PkrI GCNGC 1 cut(s) 235
PspN4I GGNNCC 2 cut(s) 336, 418
PspPI GGNCC 1 cut(s) 170
PsuI RGATCY 2 cut(s) 243, 619
PvuII CAGCTG 1 cut(s) 227
RsaI GTAC 2 cut(s) 75, 581
RsaNI GTAC 2 cut(s) 74, 580
SaqAI TTAA 3 cut(s) 380, 512, 518
SatI GCNGC 1 cut(s) 234
Sau3AI GATC 5 cut(s) 102, 175, 243, 586, 619
Sau96I GGNCC 1 cut(s) 170
SetI ASST 9 cut(s) 31, 96, 114, 229, 306, 340, 540, 601, 611
Sse9I AATT 2 cut(s) 313, 514
SseBI AGGCCT 1 cut(s) 205
SsiI CCGC 1 cut(s) 139
SspMI CTAG 3 cut(s) 122, 155, 428
StuI AGGCCT 1 cut(s) 205
StyI CCWWGG 1 cut(s) 166
TaaI ACNGT 3 cut(s) 421, 465, 584
TasI AATT 2 cut(s) 313, 514
TatI WGTACW 1 cut(s) 579
Tru1I TTAA 3 cut(s) 380, 512, 518
Tru9I TTAA 3 cut(s) 380, 512, 518
TscAI CASTG 1 cut(s) 589
TseI GCWGC 1 cut(s) 233
TspDTI ATGAA 2 cut(s) 35, 548
TspGWI ACGGA 1 cut(s) 28
TspRI CASTG 1 cut(s) 589
XapI RAATTY 1 cut(s) 514
XspI CTAG 3 cut(s) 122, 155, 428
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.