Rroxscaffold_6G00399150

Cytochrome p450

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
Physical Location & Seq
Forward (+)
21080636 .. 21081070
435 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00399150.1

Sequence Viewer

Length: 435 bp
ATGGTCTCGTCGGAATTCAGTAAGCCTGTGCTCGTGGTCTCGTCGTCTGAGGCTGCCCGCGAGATCCTGAAAACCCATGATTTGGTCTTCTCTGACAGACCCAAGTTCGTCTTCTTCAAAAAGATGTTCTACAACTACAAAGACGTCGTGGCATCACCTTATGGCGAGTACTGGAGGCAGATGAGAAGTACTTGCGTCTTGAATCTTTTGAGCAACAAAAGGGTTCGCTCTTTTCTTTCTGTGAGAGAGGAGGAAATAAGTTTACTGATCAGCAAGATAAACAAGTCCTGTAATTCCTCCTCCTCCTTTGCATCATCAGTTGTGAACTTGAGCGAAATGCTTACGACGCTTACTAGTGATGTCATCTGCAGAGTTGCTATGGGGAGGAAATACAGTGATAGAGGAGAAGGTCGTGGGAGCTTTCCACGGAGATAA

Protein Analysis

144

Amino Acids

16.43

Weight (kDa)

9.75

Isoelectric Point (pI)

53.77

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 7 - 132 4.3e-17 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000061)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G48270 AT3G48280 AT3G48290 AT3G48290 AT3G48300 AT3G48300 AT3G48310 AT3G48320 AT4G20235 AT4G20235
fragaria_vesca FvH4_2g12910 FvH4_2g12910 FvH4_2g12910 FvH4_2g12910 FvH4_2g12910 FvH4_2g36190 FvH4_3g14160 FvH4_3g14210 FvH4_3g14260 FvH4_3g14260 FvH4_3g21100 FvH4_3g21380 FvH4_4g24460 FvH4_4g24500 FvH4_5g06571 FvH4_5g06571 FvH4_5g06571 FvH4_5g06571 FvH4_5g06572 FvH4_5g06573 FvH4_5g06574 FvH4_5g06575 FvH4_5g06576 FvH4_5g06577 FvH4_5g06577 FvH4_5g07540 FvH4_5g07550 FvH4_5g07560 FvH4_5g07570 FvH4_5g29491 FvH4_5g29492 FvH4_6g23870 FvH4_6g23880 FvH4_6g26870 FvH4_7g11861 FvH4_7g11862 FvH4_7g13050 FvH4_7g13060 FvH4_7g13080 FvH4_7g13080 FvH4_7g22630 FvH4_7g22650 FvH4_7g22651 FvH4_7g23020
malus_domestica MD03G1207400.v1.1 MD03G1214800.v1.1 MD03G1218500.v1.1 MD06G1163100.v1.1 MD06G1163300.v1.1 MD06G1163400.v1.1 MD06G1163500.v1.1 MD06G1163600.v1.1 MD06G1163800.v1.1 MD06G1164000.v1.1 MD06G1164100.v1.1 MD06G1224400.v1.1 MD08G1222800.v1.1 MD08G1222900.v1.1 MD08G1223100.v1.1 MD11G1091500.v1.1 MD11G1091800.v1.1 MD14G1163200.v1.1 MD14G1169000.v1.1 MD15G1207200.v1.1 MD15G1207300.v1.1 MD17G1259400.v1.1
prunus_persica Prupe.4G198100_v2.0.a1 Prupe.4G199100_v2.0.a1 Prupe.4G199400_v2.0.a1 Prupe.4G199800_v2.0.a1 Prupe.4G225200_v2.0.a1 Prupe.4G239100_v2.0.a1 Prupe.5G156600_v2.0.a1 Prupe.5G163500_v2.0.a1 Prupe.7G209500_v2.0.a1 Prupe.I003400_v2.0.a1
pyrus_communis pycom03g16340 pycom06g14600 pycom06g14610 pycom06g14620 pycom06g14630 pycom06g14640 pycom06g14670 pycom06g14690 pycom08g19390 pycom08g19400 pycom08g19410 pycom11g07600 pycom11g07610 pycom11g07620 pycom11g07660 pycom14g13580 pycom14g14080 pycom14g14100 pycom14g14110 pycom15g18380 pycom17g26080
rosa_chinensis RchiOBHm_Chr1g0339441 RchiOBHm_Chr1g0339451 RchiOBHm_Chr1g0352191 RchiOBHm_Chr1g0368221 RchiOBHm_Chr2g0129531 RchiOBHm_Chr2g0129541 RchiOBHm_Chr3g0477631 RchiOBHm_Chr3g0482551 RchiOBHm_Chr3g0482561 RchiOBHm_Chr3g0482571 RchiOBHm_Chr4g0411601 RchiOBHm_Chr4g0422181 RchiOBHm_Chr5g0036661 RchiOBHm_Chr5g0036731 RchiOBHm_Chr6g0274021 RchiOBHm_Chr7g0190921 RchiOBHm_Chr7g0190931 RchiOBHm_Chr7g0190941 RchiOBHm_Chr7g0190951 RchiOBHm_Chr7g0190961 RchiOBHm_Chr7g0190971 RchiOBHm_Chr7g0191001 RchiOBHm_Chr7g0191011 RchiOBHm_Chr7g0191021 RchiOBHm_Chr7g0192181 RchiOBHm_Chr7g0192191 RchiOBHm_Chr7g0192201 RchiOBHm_Chr7g0192221 RchiOBHm_Chr7g0192231 RchiOBHm_Chr7g0192281 RchiOBHm_Chr7g0197311
rosa_laevigata RLG00000003942 RLG00000004345 RLG00000004379 RLG00000004383 RLG00000004384 RLG00000004385 RLG00000004387 RLG00000004388 RLG00000004389 RLG00000004480 RLG00000004481 RLG00000004482 RLG00000004483 RLG00000004485 RLG00000008342 RLG00000008401 RLG00000013583 RLG00000017044 RLG00000027229 RLG00000028349 RLG00000028350 RLG00000028353 RLG00000028820 RLG00000033707 RLG00000033710
rosa_multiflora Rmu_co8020340.1_g000001 Rmu_co8096640.1_g000001 Rmu_co8214930.1_g000001 Rmu_co8223272.1_g000001 Rmu_co8282535.1_g000001 Rmu_co8343567.1_g000001 Rmu_co8404191.1_g000001 Rmu_co8455157.1_g000001 Rmu_sc0000062.1_g000028 Rmu_sc0000082.1_g000091 Rmu_sc0000509.1_g000017 Rmu_sc0000775.1_g000001 Rmu_sc0000999.1_g000034 Rmu_sc0001559.1_g000004 Rmu_sc0001559.1_g000009 Rmu_sc0002164.1_g000001 Rmu_sc0002164.1_g000005 Rmu_sc0002164.1_g000007 Rmu_sc0002164.1_g000008 Rmu_sc0002164.1_g000009 Rmu_sc0002164.1_g000019 Rmu_sc0002247.1_g000009 Rmu_sc0002373.1_g000002 Rmu_sc0002373.1_g000003 Rmu_sc0002944.1_g000059 Rmu_sc0003930.1_g000004 Rmu_sc0004958.1_g000001 Rmu_sc0005197.1_g000014 Rmu_sc0005898.1_g000008 Rmu_sc0005898.1_g000009 Rmu_sc0005898.1_g000015 Rmu_sc0006059.1_g000004 Rmu_sc0006059.1_g000010 Rmu_sc0006903.1_g000007 Rmu_sc0006903.1_g000008 Rmu_sc0006968.1_g000001 Rmu_sc0011009.1_g000009 Rmu_sc0022852.1_g000002 Rmu_sc0033854.1_g000001 Rmu_ssc0000421.1_g000057 Rmu_ssc0000421.1_g000067 Rmu_ssc0000421.1_g000069 Rmu_ssc0000421.1_g000072 Rmu_ssc0000421.1_g000081 Rmu_ssc0000421.1_g000086
rosa_roxburghii Rroxscaffold_158G00443680 Rroxscaffold_158G00443710 Rroxscaffold_158G00443720 Rroxscaffold_158G00443740 Rroxscaffold_1G00034950 Rroxscaffold_1G00044240 Rroxscaffold_1G00044270 Rroxscaffold_3G00241380 Rroxscaffold_3G00247000 Rroxscaffold_3G00263120 Rroxscaffold_3G00263150 Rroxscaffold_3G00263160 Rroxscaffold_3G00263170 Rroxscaffold_3G00263180 Rroxscaffold_3G00263190 Rroxscaffold_3G00263210 Rroxscaffold_3G00263230 Rroxscaffold_3G00263260 Rroxscaffold_3G00264110 Rroxscaffold_3G00264130 Rroxscaffold_3G00264160 Rroxscaffold_3G00264180 Rroxscaffold_3G00264200 Rroxscaffold_4G00288750 Rroxscaffold_4G00303110 Rroxscaffold_4G00303120 Rroxscaffold_4G00322280 Rroxscaffold_5G00356200 Rroxscaffold_6G00399150 Rroxscaffold_6G00399290 Rroxscaffold_7G00194770
rosa_rugosa Rorug01G0225300 Rorug01G0225400 Rorug01G0225800 Rorug01G0226000 Rorug01G0339400 Rorug01G0451500 Rorug03G0196900 Rorug03G0294900 Rorug04G0107500 Rorug04G0107600 Rorug04G0129700 Rorug04G0178000 Rorug05G0144900.1 Rorug05G0145000 Rorug05G0228000 Rorug05G0228600 Rorug06G0078300 Rorug06G0508000 Rorug06G0508100 Rorug06G0508100 Rorug06G0508400 Rorug06G0513400 Rorug07G0000100 Rorug07G0000200 Rorug07G0000300 Rorug07G0000500 Rorug07G0000800
rosa_samantha Rh1BG060400 Rh1BG210300 Rh1BG210700 Rh1BG210800 Rh1BG309800 Rh1CG223800 Rh1CG224200 Rh1CG325200 Rh1DG237000 Rh1DG237400 Rh1DG341600 Rh2DG365700 Rh3AG212500 Rh3AG248400 Rh3CG239800 Rh3DG239300 Rh4AG169300 Rh4BG166200 Rh4BG240500 Rh4BG240600 Rh4DG163600 Rh5AG249600 Rh5AG249900 Rh5AG250000 Rh5CG283100 Rh5CG283200 Rh5CG283400 Rh5DG259200 Rh5DG259800 Rh6BG197700 Rh6CG197800 Rh6DG189400 Rh7AG114900 Rh7AG115000 Rh7AG115200 Rh7AG115300 Rh7AG115400 Rh7AG115500 Rh7AG123900 Rh7AG124100 Rh7AG124300 Rh7BG117200 Rh7BG117400 Rh7BG118400 Rh7BG125400 Rh7BG125600 Rh7BG125700 Rh7BG125800 Rh7BG125900 Rh7BG126000 Rh7BG126400 Rh7BG126600 Rh7BG126700 Rh7BG166200 Rh7DG118600 Rh7DG118700 Rh7DG118900 Rh7DG119000 Rh7DG119100 Rh7DG127400 Rh7DG127600 Rh7DG127700 Rh7DG127900 Rh7DG128200
rosa_wichuraiana Rw1G013270 Rw1G020790 Rw2G027890 Rw2G028040 Rw3G019240 Rw4G014070 Rw4G020540 Rw5G021320 Rw5G022970 Rw6G016920 Rw7G010020 Rw7G010040 Rw7G010580 Rw7G010590 Rw7G010600 Rw7G010610 Rw7G010620 Rw7G010630 Rw7G010640 Rw7G010690

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 147
AccB7I CCANNNNNTGG 1 cut(s) 82
AccII CGCG 1 cut(s) 60
AciI CCGC 1 cut(s) 58
AclWI GGATC 1 cut(s) 58
AcsI RAATTY 1 cut(s) 14
AcyI GRCGYC 1 cut(s) 144
AfaI GTAC 2 cut(s) 170, 190
AfiI CCNNNNNNNGG 1 cut(s) 82
AgsI TTSAA 2 cut(s) 118, 202
AhlI ACTAGT 1 cut(s) 353
AjuI GAANNNNNNNTTGG 2 cut(s) 95, 127
AluBI AGCT 1 cut(s) 420
AluI AGCT 1 cut(s) 420
Alw21I GWGCWC 1 cut(s) 33
Alw26I GTCTC 2 cut(s) 10, 43
AlwI GGATC 1 cut(s) 58
ApeKI GCWGC 1 cut(s) 53
ApoI RAATTY 1 cut(s) 14
AsuHPI GGTGA 1 cut(s) 147
BauI CACGAG 1 cut(s) 32
BbsI GAAGAC 2 cut(s) 79, 103
Bbv12I GWGCWC 1 cut(s) 33
BbvI GCAGC 1 cut(s) 40
BclI TGATCA 1 cut(s) 267
BcoDI GTCTC 2 cut(s) 10, 43
BcuI ACTAGT 1 cut(s) 353
BfaI CTAG 1 cut(s) 354
BfmI CTRYAG 1 cut(s) 367
BisI GCNGC 1 cut(s) 54
BlsI GCNGC 1 cut(s) 55
BmcAI AGTACT 2 cut(s) 170, 190
BmsI GCATC 2 cut(s) 161, 320
BpiI GAAGAC 2 cut(s) 79, 103
BpmI CTGGAG 1 cut(s) 193
BpuEI CTTGAG 1 cut(s) 349
BsaHI GRCGYC 1 cut(s) 144
BsaI GGTCTC 2 cut(s) 10, 43
BsaJI CCNNGG 1 cut(s) 425
Bsc4I CCNNNNNNNGG 1 cut(s) 82
Bse1I ACTGG 1 cut(s) 176
BseDI CCNNGG 1 cut(s) 425
BseLI CCNNNNNNNGG 1 cut(s) 82
BseMII CTCAG 1 cut(s) 39
BseNI ACTGG 1 cut(s) 176
BseRI GAGGAG 4 cut(s) 263, 289, 292, 417
BseXI GCAGC 1 cut(s) 40
Bsh1236I CGCG 1 cut(s) 60
BsiHKAI GWGCWC 1 cut(s) 33
BslI CCNNNNNNNGG 1 cut(s) 82
BsmAI GTCTC 2 cut(s) 10, 43
Bso31I GGTCTC 2 cut(s) 10, 43
Bsp1286I GDGCHC 1 cut(s) 33
Bsp143I GATC 2 cut(s) 63, 267
BspACI CCGC 1 cut(s) 58
BspCNI CTCAG 1 cut(s) 40
BspFNI CGCG 1 cut(s) 60
BspMAI CTGCAG 1 cut(s) 371
BspPI GGATC 1 cut(s) 58
BspTNI GGTCTC 2 cut(s) 10, 43
BsrI ACTGG 1 cut(s) 176
BssECI CCNNGG 1 cut(s) 425
BssMI GATC 2 cut(s) 63, 267
BssNI GRCGYC 1 cut(s) 144
BssSI CACGAG 1 cut(s) 32
Bst2BI CACGAG 1 cut(s) 32
Bst4CI ACNGT 1 cut(s) 395
BstACI GRCGYC 1 cut(s) 144
BstC8I GCNNGC 1 cut(s) 58
BstDEI CTNAG 1 cut(s) 48
BstDSI CCRYGG 1 cut(s) 425
BstFNI CGCG 1 cut(s) 60
BstKTI GATC 2 cut(s) 66, 270
BstMAI GTCTC 2 cut(s) 10, 43
BstMBI GATC 2 cut(s) 63, 267
BstMWI GCNNNNNNNGC 1 cut(s) 346
BstSFI CTRYAG 1 cut(s) 367
BstUI CGCG 1 cut(s) 60
BstV1I GCAGC 1 cut(s) 40
BstV2I GAAGAC 2 cut(s) 79, 103
BstX2I RGATCY 1 cut(s) 63
BstYI RGATCY 1 cut(s) 63
BtgI CCRYGG 1 cut(s) 425
BtsIMutI CAGTG 1 cut(s) 400
Cac8I GCNNGC 1 cut(s) 58
CseI GACGC 2 cut(s) 184, 355
Csp6I GTAC 2 cut(s) 169, 189
CviAII CATG 1 cut(s) 77
CviJI RGCY 3 cut(s) 25, 53, 420
CviKI_1 RGCY 3 cut(s) 25, 53, 420
CviQI GTAC 2 cut(s) 169, 189
DdeI CTNAG 1 cut(s) 48
DpnI GATC 2 cut(s) 65, 269
DpnII GATC 2 cut(s) 63, 267
Eco31I GGTCTC 2 cut(s) 10, 43
EcoRI GAATTC 1 cut(s) 14
FaeI CATG 1 cut(s) 80
FaiI YATR 3 cut(s) 78, 162, 380
FalI AAGNNNNNCTT 2 cut(s) 95, 127
FatI CATG 1 cut(s) 76
FauI CCCGC 1 cut(s) 65
FbaI TGATCA 1 cut(s) 267
Fnu4HI GCNGC 1 cut(s) 54
Fsp4HI GCNGC 1 cut(s) 54
FspBI CTAG 1 cut(s) 354
GluI GCNGC 1 cut(s) 54
GsuI CTGGAG 1 cut(s) 193
HgaI GACGC 2 cut(s) 184, 355
Hin1I GRCGYC 1 cut(s) 144
Hin1II CATG 1 cut(s) 80
HinfI GANTC 1 cut(s) 202
HphI GGTGA 1 cut(s) 147
Hpy166II GTNNAC 2 cut(s) 263, 325
Hpy188I TCNGA 3 cut(s) 13, 49, 94
Hpy188III TCNNGA 2 cut(s) 67, 199
Hpy8I GTNNAC 2 cut(s) 263, 325
Hpy99I CGWCG 4 cut(s) 13, 46, 149, 349
HpyAV CCTTC 1 cut(s) 401
HpyCH4III ACNGT 1 cut(s) 395
HpyCH4IV ACGT 1 cut(s) 144
HpyCH4V TGCA 2 cut(s) 311, 369
HpyF10VI GCNNNNNNNGC 1 cut(s) 346
HpyF3I CTNAG 1 cut(s) 48
HpySE526I ACGT 1 cut(s) 144
Hsp92I GRCGYC 1 cut(s) 144
Hsp92II CATG 1 cut(s) 80
Ksp22I TGATCA 1 cut(s) 267
Kzo9I GATC 2 cut(s) 63, 267
LmnI GCTCC 1 cut(s) 417
LpnPI CCDG 4 cut(s) 39, 80, 157, 301
Lsp1109I GCAGC 1 cut(s) 40
LweI GCATC 2 cut(s) 161, 320
MaeI CTAG 1 cut(s) 354
MaeII ACGT 1 cut(s) 144
MalI GATC 2 cut(s) 65, 269
MboI GATC 2 cut(s) 63, 267
MboII GAAGA 3 cut(s) 79, 103, 106
MflI RGATCY 1 cut(s) 63
MhlI GDGCHC 1 cut(s) 33
MluCI AATT 2 cut(s) 14, 292
MnlI CCTC 9 cut(s) 43, 168, 241, 244, 307, 310, 313, 378, 395
MvnI CGCG 1 cut(s) 60
MwoI GCNNNNNNNGC 1 cut(s) 346
NdeII GATC 2 cut(s) 63, 267
NlaIII CATG 1 cut(s) 80
PfeI GAWTC 1 cut(s) 202
PflMI CCANNNNNTGG 1 cut(s) 82
PkrI GCNGC 1 cut(s) 55
PstI CTGCAG 1 cut(s) 371
PsuI RGATCY 1 cut(s) 63
RsaI GTAC 2 cut(s) 170, 190
RsaNI GTAC 2 cut(s) 169, 189
SatI GCNGC 1 cut(s) 54
Sau3AI GATC 2 cut(s) 63, 267
ScaI AGTACT 2 cut(s) 170, 190
SduI GDGCHC 1 cut(s) 33
SetI ASST 4 cut(s) 147, 160, 412, 422
SfaNI GCATC 2 cut(s) 161, 320
SfcI CTRYAG 1 cut(s) 367
SmlI CTYRAG 1 cut(s) 328
SmoI CTYRAG 1 cut(s) 328
SpeI ACTAGT 1 cut(s) 353
Sse9I AATT 2 cut(s) 14, 292
SsiI CCGC 1 cut(s) 58
SspMI CTAG 1 cut(s) 354
TaaI ACNGT 1 cut(s) 395
TaiI ACGT 1 cut(s) 147
TasI AATT 2 cut(s) 14, 292
TatI WGTACW 2 cut(s) 168, 188
TfiI GAWTC 1 cut(s) 202
TscAI CASTG 1 cut(s) 400
TseI GCWGC 1 cut(s) 53
TspRI CASTG 1 cut(s) 400
Van91I CCANNNNNTGG 1 cut(s) 82
XapI RAATTY 1 cut(s) 14
XspI CTAG 1 cut(s) 354
ZraI GACGTC 1 cut(s) 145
ZrmI AGTACT 2 cut(s) 170, 190
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.