Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002164.1

Orthogroup ID

OG0000061

Physical Location & Seq

Genomic Coordinates Forward (+)

71699 .. 72076

Gene Structure 378 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002164.1_g000019.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 378 bp

atggaagatgtaaccattgatggatacgacattctagccaaaacaagaatttttgtcaatgcctgggcaatagggagagacccagaatcttgggaaaacccagaaaagtttgaaccagaaagatttatgggtagcactattgatttcaaggggcaggattttgagcttttaccttttggggcgggtagaagaggttgtccggctattacattcagcacagccagcattgagcttgctctagcacaacttctgcatagctttgattgggagcttcctgctggtactgcagctgatgatttggacatgacagaagtttttggcataacaatgcacaggatagccaatctgattgttgtcgccagaccatggtttccctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0012505 GO:0016020 GO:0031090 GO:0031984 GO:0042175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0098827

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

p450

Protein Analysis

125

Amino Acids

14.04

Weight (kDa)

4.44

Isoelectric Point (pI)

41.8

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000061)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G48270 AT3G48280 AT3G48290 AT3G48290 AT3G48300 AT3G48300 AT3G48310 AT3G48320 AT4G20235 AT4G20235
fragaria_vesca	FvH4_2g12910 FvH4_2g12910 FvH4_2g12910 FvH4_2g12910 FvH4_2g12910 FvH4_2g36190 FvH4_3g14160 FvH4_3g14210 FvH4_3g14260 FvH4_3g14260 FvH4_3g21100 FvH4_3g21380 FvH4_4g24460 FvH4_4g24500 FvH4_5g06571 FvH4_5g06571 FvH4_5g06571 FvH4_5g06571 FvH4_5g06572 FvH4_5g06573 FvH4_5g06574 FvH4_5g06575 FvH4_5g06576 FvH4_5g06577 FvH4_5g06577 FvH4_5g07540 FvH4_5g07550 FvH4_5g07560 FvH4_5g07570 FvH4_5g29491 FvH4_5g29492 FvH4_6g23870 FvH4_6g23880 FvH4_6g26870 FvH4_7g11861 FvH4_7g11862 FvH4_7g13050 FvH4_7g13060 FvH4_7g13080 FvH4_7g13080 FvH4_7g22630 FvH4_7g22650 FvH4_7g22651 FvH4_7g23020
malus_domestica	MD03G1207400.v1.1 MD03G1214800.v1.1 MD03G1218500.v1.1 MD06G1163100.v1.1 MD06G1163300.v1.1 MD06G1163400.v1.1 MD06G1163500.v1.1 MD06G1163600.v1.1 MD06G1163800.v1.1 MD06G1164000.v1.1 MD06G1164100.v1.1 MD06G1224400.v1.1 MD08G1222800.v1.1 MD08G1222900.v1.1 MD08G1223100.v1.1 MD11G1091500.v1.1 MD11G1091800.v1.1 MD14G1163200.v1.1 MD14G1169000.v1.1 MD15G1207200.v1.1 MD15G1207300.v1.1 MD17G1259400.v1.1
prunus_persica	Prupe.4G198100_v2.0.a1 Prupe.4G199100_v2.0.a1 Prupe.4G199400_v2.0.a1 Prupe.4G199800_v2.0.a1 Prupe.4G225200_v2.0.a1 Prupe.4G239100_v2.0.a1 Prupe.5G156600_v2.0.a1 Prupe.5G163500_v2.0.a1 Prupe.7G209500_v2.0.a1 Prupe.I003400_v2.0.a1
pyrus_communis	pycom03g16340 pycom06g14600 pycom06g14610 pycom06g14620 pycom06g14630 pycom06g14640 pycom06g14670 pycom06g14690 pycom08g19390 pycom08g19400 pycom08g19410 pycom11g07600 pycom11g07610 pycom11g07620 pycom11g07660 pycom14g13580 pycom14g14080 pycom14g14100 pycom14g14110 pycom15g18380 pycom17g26080
rosa_chinensis	RchiOBHm_Chr1g0339441 RchiOBHm_Chr1g0339451 RchiOBHm_Chr1g0352191 RchiOBHm_Chr1g0368221 RchiOBHm_Chr2g0129531 RchiOBHm_Chr2g0129541 RchiOBHm_Chr3g0477631 RchiOBHm_Chr3g0482551 RchiOBHm_Chr3g0482561 RchiOBHm_Chr3g0482571 RchiOBHm_Chr4g0411601 RchiOBHm_Chr4g0422181 RchiOBHm_Chr5g0036661 RchiOBHm_Chr5g0036731 RchiOBHm_Chr6g0274021 RchiOBHm_Chr7g0190921 RchiOBHm_Chr7g0190931 RchiOBHm_Chr7g0190941 RchiOBHm_Chr7g0190951 RchiOBHm_Chr7g0190961 RchiOBHm_Chr7g0190971 RchiOBHm_Chr7g0191001 RchiOBHm_Chr7g0191011 RchiOBHm_Chr7g0191021 RchiOBHm_Chr7g0192181 RchiOBHm_Chr7g0192191 RchiOBHm_Chr7g0192201 RchiOBHm_Chr7g0192221 RchiOBHm_Chr7g0192231 RchiOBHm_Chr7g0192281 RchiOBHm_Chr7g0197311
rosa_laevigata	RLG00000003942 RLG00000004345 RLG00000004379 RLG00000004383 RLG00000004384 RLG00000004385 RLG00000004387 RLG00000004388 RLG00000004389 RLG00000004480 RLG00000004481 RLG00000004482 RLG00000004483 RLG00000004485 RLG00000008342 RLG00000008401 RLG00000013583 RLG00000017044 RLG00000027229 RLG00000028349 RLG00000028350 RLG00000028353 RLG00000028820 RLG00000033707 RLG00000033710
rosa_multiflora	Rmu_co8020340.1_g000001 Rmu_co8096640.1_g000001 Rmu_co8214930.1_g000001 Rmu_co8223272.1_g000001 Rmu_co8282535.1_g000001 Rmu_co8343567.1_g000001 Rmu_co8404191.1_g000001 Rmu_co8455157.1_g000001 Rmu_sc0000062.1_g000028 Rmu_sc0000082.1_g000091 Rmu_sc0000509.1_g000017 Rmu_sc0000775.1_g000001 Rmu_sc0000999.1_g000034 Rmu_sc0001559.1_g000004 Rmu_sc0001559.1_g000009 Rmu_sc0002164.1_g000001 Rmu_sc0002164.1_g000005 Rmu_sc0002164.1_g000007 Rmu_sc0002164.1_g000008 Rmu_sc0002164.1_g000009 Rmu_sc0002164.1_g000019 Rmu_sc0002247.1_g000009 Rmu_sc0002373.1_g000002 Rmu_sc0002373.1_g000003 Rmu_sc0002944.1_g000059 Rmu_sc0003930.1_g000004 Rmu_sc0004958.1_g000001 Rmu_sc0005197.1_g000014 Rmu_sc0005898.1_g000008 Rmu_sc0005898.1_g000009 Rmu_sc0005898.1_g000015 Rmu_sc0006059.1_g000004 Rmu_sc0006059.1_g000010 Rmu_sc0006903.1_g000007 Rmu_sc0006903.1_g000008 Rmu_sc0006968.1_g000001 Rmu_sc0011009.1_g000009 Rmu_sc0022852.1_g000002 Rmu_sc0033854.1_g000001 Rmu_ssc0000421.1_g000057 Rmu_ssc0000421.1_g000067 Rmu_ssc0000421.1_g000069 Rmu_ssc0000421.1_g000072 Rmu_ssc0000421.1_g000081 Rmu_ssc0000421.1_g000086
rosa_roxburghii	Rroxscaffold_158G00443680 Rroxscaffold_158G00443710 Rroxscaffold_158G00443720 Rroxscaffold_158G00443740 Rroxscaffold_1G00034950 Rroxscaffold_1G00044240 Rroxscaffold_1G00044270 Rroxscaffold_3G00241380 Rroxscaffold_3G00247000 Rroxscaffold_3G00263120 Rroxscaffold_3G00263150 Rroxscaffold_3G00263160 Rroxscaffold_3G00263170 Rroxscaffold_3G00263180 Rroxscaffold_3G00263190 Rroxscaffold_3G00263210 Rroxscaffold_3G00263230 Rroxscaffold_3G00263260 Rroxscaffold_3G00264110 Rroxscaffold_3G00264130 Rroxscaffold_3G00264160 Rroxscaffold_3G00264180 Rroxscaffold_3G00264200 Rroxscaffold_4G00288750 Rroxscaffold_4G00303110 Rroxscaffold_4G00303120 Rroxscaffold_4G00322280 Rroxscaffold_5G00356200 Rroxscaffold_6G00399150 Rroxscaffold_6G00399290 Rroxscaffold_7G00194770
rosa_rugosa	Rorug01G0225300 Rorug01G0225400 Rorug01G0225800 Rorug01G0226000 Rorug01G0339400 Rorug01G0451500 Rorug03G0196900 Rorug03G0294900 Rorug04G0107500 Rorug04G0107600 Rorug04G0129700 Rorug04G0178000 Rorug05G0144900.1 Rorug05G0145000 Rorug05G0228000 Rorug05G0228600 Rorug06G0078300 Rorug06G0508000 Rorug06G0508100 Rorug06G0508100 Rorug06G0508400 Rorug06G0513400 Rorug07G0000100 Rorug07G0000200 Rorug07G0000300 Rorug07G0000500 Rorug07G0000800
rosa_samantha	Rh1BG060400 Rh1BG210300 Rh1BG210700 Rh1BG210800 Rh1BG309800 Rh1CG223800 Rh1CG224200 Rh1CG325200 Rh1DG237000 Rh1DG237400 Rh1DG341600 Rh2DG365700 Rh3AG212500 Rh3AG248400 Rh3CG239800 Rh3DG239300 Rh4AG169300 Rh4BG166200 Rh4BG240500 Rh4BG240600 Rh4DG163600 Rh5AG249600 Rh5AG249900 Rh5AG250000 Rh5CG283100 Rh5CG283200 Rh5CG283400 Rh5DG259200 Rh5DG259800 Rh6BG197700 Rh6CG197800 Rh6DG189400 Rh7AG114900 Rh7AG115000 Rh7AG115200 Rh7AG115300 Rh7AG115400 Rh7AG115500 Rh7AG123900 Rh7AG124100 Rh7AG124300 Rh7BG117200 Rh7BG117400 Rh7BG118400 Rh7BG125400 Rh7BG125600 Rh7BG125700 Rh7BG125800 Rh7BG125900 Rh7BG126000 Rh7BG126400 Rh7BG126600 Rh7BG126700 Rh7BG166200 Rh7DG118600 Rh7DG118700 Rh7DG118900 Rh7DG119000 Rh7DG119100 Rh7DG127400 Rh7DG127600 Rh7DG127700 Rh7DG127900 Rh7DG128200
rosa_wichuraiana	Rw1G013270 Rw1G020790 Rw2G027890 Rw2G028040 Rw3G019240 Rw4G014070 Rw4G020540 Rw5G021320 Rw5G022970 Rw6G016920 Rw7G010020 Rw7G010040 Rw7G010580 Rw7G010590 Rw7G010600 Rw7G010610 Rw7G010620 Rw7G010630 Rw7G010640 Rw7G010690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	366
AciI	CCGC	1 cut(s)	182
AcsI	RAATTY	1 cut(s)	48
AfaI	GTAC	1 cut(s)	283
AfiI	CCNNNNNNNGG	1 cut(s)	366
AgsI	TTSAA	2 cut(s)	113, 148
AjnI	CCWGG	1 cut(s)	62
AluBI	AGCT	5 cut(s)	166, 232, 258, 271, 290
AluI	AGCT	5 cut(s)	166, 232, 258, 271, 290
Alw26I	GTCTC	1 cut(s)	72
ApeKI	GCWGC	1 cut(s)	287
ApoI	RAATTY	1 cut(s)	48
BbvI	GCAGC	1 cut(s)	299
BccI	CCATC	1 cut(s)	14
BciT130I	CCWGG	1 cut(s)	64
BciVI	GTATCC	1 cut(s)	17
BcoDI	GTCTC	1 cut(s)	72
BfaI	CTAG	2 cut(s)	35, 239
BfmI	CTRYAG	1 cut(s)	285
BfuI	GTATCC	1 cut(s)	17
BisI	GCNGC	1 cut(s)	288
BlsI	GCNGC	1 cut(s)	289
Bme1390I	CCNGG	1 cut(s)	64
BmrFI	CCNGG	1 cut(s)	64
BsaI	GGTCTC	1 cut(s)	72
BsaJI	CCNNGG	2 cut(s)	63, 365
Bsc4I	CCNNNNNNNGG	1 cut(s)	366
BseBI	CCWGG	1 cut(s)	64
BseDI	CCNNGG	2 cut(s)	63, 365
BseLI	CCNNNNNNNGG	1 cut(s)	366
BseXI	GCAGC	1 cut(s)	299
BsiSI	CCGG	1 cut(s)	200
BslI	CCNNNNNNNGG	1 cut(s)	366
BsmAI	GTCTC	1 cut(s)	72
Bso31I	GGTCTC	1 cut(s)	72
Bsp19I	CCATGG	1 cut(s)	365
BspACI	CCGC	1 cut(s)	182
BspMAI	CTGCAG	1 cut(s)	289
BspTNI	GGTCTC	1 cut(s)	72
BssECI	CCNNGG	2 cut(s)	63, 365
BssT1I	CCWWGG	1 cut(s)	365
Bst2UI	CCWGG	1 cut(s)	64
Bst6I	CTCTTC	1 cut(s)	184
BstC8I	GCNNGC	2 cut(s)	223, 234
BstDSI	CCRYGG	1 cut(s)	365
BstMAI	GTCTC	1 cut(s)	72
BstMWI	GCNNNNNNNGC	2 cut(s)	222, 284
BstNI	CCWGG	1 cut(s)	64
BstSCI	CCNGG	1 cut(s)	62
BstSFI	CTRYAG	1 cut(s)	285
BstV1I	GCAGC	1 cut(s)	299
BstXI	CCANNNNNNTGG	1 cut(s)	90
BsuI	GTATCC	1 cut(s)	17
BtgI	CCRYGG	1 cut(s)	365
Cac8I	GCNNGC	2 cut(s)	223, 234
Csp6I	GTAC	1 cut(s)	282
CviAII	CATG	2 cut(s)	304, 366
CviJI	RGCY	9 cut(s)	38, 166, 203, 221, 232, 258, 271, 290, 341
CviKI_1	RGCY	9 cut(s)	38, 166, 203, 221, 232, 258, 271, 290, 341
CviQI	GTAC	1 cut(s)	282
Eam1104I	CTCTTC	1 cut(s)	184
EarI	CTCTTC	1 cut(s)	184
Eco130I	CCWWGG	1 cut(s)	365
Eco31I	GGTCTC	1 cut(s)	72
EcoRII	CCWGG	1 cut(s)	62
EcoT14I	CCWWGG	1 cut(s)	365
ErhI	CCWWGG	1 cut(s)	365
FaeI	CATG	2 cut(s)	307, 369
FaiI	YATR	5 cut(s)	128, 255, 305, 323, 367
FatI	CATG	2 cut(s)	303, 365
FauI	CCCGC	1 cut(s)	175
Fnu4HI	GCNGC	1 cut(s)	288
Fsp4HI	GCNGC	1 cut(s)	288
FspBI	CTAG	2 cut(s)	35, 239
GluI	GCNGC	1 cut(s)	288
HapII	CCGG	1 cut(s)	200
Hin1II	CATG	2 cut(s)	307, 369
HinfI	GANTC	1 cut(s)	86
HpaII	CCGG	1 cut(s)	200
Hpy188I	TCNGA	1 cut(s)	348
HpyCH4V	TGCA	3 cut(s)	253, 287, 331
HpyF10VI	GCNNNNNNNGC	2 cut(s)	222, 284
Hsp92II	CATG	2 cut(s)	307, 369
LmnI	GCTCC	1 cut(s)	268
Lsp1109I	GCAGC	1 cut(s)	299
MaeI	CTAG	2 cut(s)	35, 239
MaeIII	GTNAC	1 cut(s)	10
MboII	GAAGA	2 cut(s)	17, 201
MluCI	AATT	1 cut(s)	48
MnlI	CCTC	1 cut(s)	185
MslI	CAYNNNNRTG	1 cut(s)	326
MspA1I	CMGCKG	1 cut(s)	290
MspI	CCGG	1 cut(s)	200
MspR9I	CCNGG	1 cut(s)	64
MvaI	CCWGG	1 cut(s)	64
MwoI	GCNNNNNNNGC	2 cut(s)	222, 284
NcoI	CCATGG	1 cut(s)	365
NlaIII	CATG	2 cut(s)	307, 369
PfeI	GAWTC	1 cut(s)	86
PflMI	CCANNNNNTGG	1 cut(s)	366
PkrI	GCNGC	1 cut(s)	289
Psp6I	CCWGG	1 cut(s)	62
PspGI	CCWGG	1 cut(s)	62
PstI	CTGCAG	1 cut(s)	289
PvuII	CAGCTG	1 cut(s)	290
RsaI	GTAC	1 cut(s)	283
RsaNI	GTAC	1 cut(s)	282
RseI	CAYNNNNRTG	1 cut(s)	326
SatI	GCNGC	1 cut(s)	288
ScrFI	CCNGG	1 cut(s)	64
SetI	ASST	7 cut(s)	168, 175, 196, 234, 260, 273, 292
SfcI	CTRYAG	1 cut(s)	285
SmiMI	CAYNNNNRTG	1 cut(s)	326
Sse9I	AATT	1 cut(s)	48
SsiI	CCGC	1 cut(s)	182
SspMI	CTAG	2 cut(s)	35, 239
StyD4I	CCNGG	1 cut(s)	62
StyI	CCWWGG	1 cut(s)	365
TasI	AATT	1 cut(s)	48
TfiI	GAWTC	1 cut(s)	86
TseI	GCWGC	1 cut(s)	287
Van91I	CCANNNNNTGG	1 cut(s)	366
XapI	RAATTY	1 cut(s)	48
XspI	CTAG	2 cut(s)	35, 239

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.