Rroxscaffold_4G00303120

Cytochrome p450

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
Physical Location & Seq
Reverse (-)
23463175 .. 23463730
556 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00303120.1

Sequence Viewer

Length: 510 bp
ATGAAGAAATTGCAAAATGAAGTTAGGGGCATAGTTCGACATAAAAAGAATATAACAGAGGAAGATTTGGTTTGCATGCACTACTTGAAGGCAGTAACTAAAGAGACTTTACGCTTACATCCTCCAGGTCCGTTACTAGTTCCTAGGATATGCAACAGAGATGTGAAAATTAAAGGTTACGACAGTAAGGCAAATACAAATGTAATGGTTAATGCATGGGCCCTTGGAAGAGAATCTAAATCATATACAAATTCCAAGCAGTTTGAGCCAGAAAGGTTCTTGAATAGCGCCATAGACGGGGCTGCCCTGGAATTCTGTTTGCTTATGGTTCTTGAAGAGCTTGCTTTGGCAAATATTGTGCATAAGTTTGACTGGGCTTTGCCTCATAGTGCAAAAGAAGATGATTTGGACATGACTGAATCTACAGGTGTAGTTGTGCGTAGAAAGTATCCTCTTAAGGCAATTGCTACTCTATTTGAGGGGACTCCTAAGAGGGATTCTTCTTTTTAG

Protein Analysis

169

Amino Acids

19.21

Weight (kDa)

8.94

Isoelectric Point (pI)

46.99

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 1 - 97 6.1e-30 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000061)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G48270 AT3G48280 AT3G48290 AT3G48290 AT3G48300 AT3G48300 AT3G48310 AT3G48320 AT4G20235 AT4G20235
fragaria_vesca FvH4_2g12910 FvH4_2g12910 FvH4_2g12910 FvH4_2g12910 FvH4_2g12910 FvH4_2g36190 FvH4_3g14160 FvH4_3g14210 FvH4_3g14260 FvH4_3g14260 FvH4_3g21100 FvH4_3g21380 FvH4_4g24460 FvH4_4g24500 FvH4_5g06571 FvH4_5g06571 FvH4_5g06571 FvH4_5g06571 FvH4_5g06572 FvH4_5g06573 FvH4_5g06574 FvH4_5g06575 FvH4_5g06576 FvH4_5g06577 FvH4_5g06577 FvH4_5g07540 FvH4_5g07550 FvH4_5g07560 FvH4_5g07570 FvH4_5g29491 FvH4_5g29492 FvH4_6g23870 FvH4_6g23880 FvH4_6g26870 FvH4_7g11861 FvH4_7g11862 FvH4_7g13050 FvH4_7g13060 FvH4_7g13080 FvH4_7g13080 FvH4_7g22630 FvH4_7g22650 FvH4_7g22651 FvH4_7g23020
malus_domestica MD03G1207400.v1.1 MD03G1214800.v1.1 MD03G1218500.v1.1 MD06G1163100.v1.1 MD06G1163300.v1.1 MD06G1163400.v1.1 MD06G1163500.v1.1 MD06G1163600.v1.1 MD06G1163800.v1.1 MD06G1164000.v1.1 MD06G1164100.v1.1 MD06G1224400.v1.1 MD08G1222800.v1.1 MD08G1222900.v1.1 MD08G1223100.v1.1 MD11G1091500.v1.1 MD11G1091800.v1.1 MD14G1163200.v1.1 MD14G1169000.v1.1 MD15G1207200.v1.1 MD15G1207300.v1.1 MD17G1259400.v1.1
prunus_persica Prupe.4G198100_v2.0.a1 Prupe.4G199100_v2.0.a1 Prupe.4G199400_v2.0.a1 Prupe.4G199800_v2.0.a1 Prupe.4G225200_v2.0.a1 Prupe.4G239100_v2.0.a1 Prupe.5G156600_v2.0.a1 Prupe.5G163500_v2.0.a1 Prupe.7G209500_v2.0.a1 Prupe.I003400_v2.0.a1
pyrus_communis pycom03g16340 pycom06g14600 pycom06g14610 pycom06g14620 pycom06g14630 pycom06g14640 pycom06g14670 pycom06g14690 pycom08g19390 pycom08g19400 pycom08g19410 pycom11g07600 pycom11g07610 pycom11g07620 pycom11g07660 pycom14g13580 pycom14g14080 pycom14g14100 pycom14g14110 pycom15g18380 pycom17g26080
rosa_chinensis RchiOBHm_Chr1g0339441 RchiOBHm_Chr1g0339451 RchiOBHm_Chr1g0352191 RchiOBHm_Chr1g0368221 RchiOBHm_Chr2g0129531 RchiOBHm_Chr2g0129541 RchiOBHm_Chr3g0477631 RchiOBHm_Chr3g0482551 RchiOBHm_Chr3g0482561 RchiOBHm_Chr3g0482571 RchiOBHm_Chr4g0411601 RchiOBHm_Chr4g0422181 RchiOBHm_Chr5g0036661 RchiOBHm_Chr5g0036731 RchiOBHm_Chr6g0274021 RchiOBHm_Chr7g0190921 RchiOBHm_Chr7g0190931 RchiOBHm_Chr7g0190941 RchiOBHm_Chr7g0190951 RchiOBHm_Chr7g0190961 RchiOBHm_Chr7g0190971 RchiOBHm_Chr7g0191001 RchiOBHm_Chr7g0191011 RchiOBHm_Chr7g0191021 RchiOBHm_Chr7g0192181 RchiOBHm_Chr7g0192191 RchiOBHm_Chr7g0192201 RchiOBHm_Chr7g0192221 RchiOBHm_Chr7g0192231 RchiOBHm_Chr7g0192281 RchiOBHm_Chr7g0197311
rosa_laevigata RLG00000003942 RLG00000004345 RLG00000004379 RLG00000004383 RLG00000004384 RLG00000004385 RLG00000004387 RLG00000004388 RLG00000004389 RLG00000004480 RLG00000004481 RLG00000004482 RLG00000004483 RLG00000004485 RLG00000008342 RLG00000008401 RLG00000013583 RLG00000017044 RLG00000027229 RLG00000028349 RLG00000028350 RLG00000028353 RLG00000028820 RLG00000033707 RLG00000033710
rosa_multiflora Rmu_co8020340.1_g000001 Rmu_co8096640.1_g000001 Rmu_co8214930.1_g000001 Rmu_co8223272.1_g000001 Rmu_co8282535.1_g000001 Rmu_co8343567.1_g000001 Rmu_co8404191.1_g000001 Rmu_co8455157.1_g000001 Rmu_sc0000062.1_g000028 Rmu_sc0000082.1_g000091 Rmu_sc0000509.1_g000017 Rmu_sc0000775.1_g000001 Rmu_sc0000999.1_g000034 Rmu_sc0001559.1_g000004 Rmu_sc0001559.1_g000009 Rmu_sc0002164.1_g000001 Rmu_sc0002164.1_g000005 Rmu_sc0002164.1_g000007 Rmu_sc0002164.1_g000008 Rmu_sc0002164.1_g000009 Rmu_sc0002164.1_g000019 Rmu_sc0002247.1_g000009 Rmu_sc0002373.1_g000002 Rmu_sc0002373.1_g000003 Rmu_sc0002944.1_g000059 Rmu_sc0003930.1_g000004 Rmu_sc0004958.1_g000001 Rmu_sc0005197.1_g000014 Rmu_sc0005898.1_g000008 Rmu_sc0005898.1_g000009 Rmu_sc0005898.1_g000015 Rmu_sc0006059.1_g000004 Rmu_sc0006059.1_g000010 Rmu_sc0006903.1_g000007 Rmu_sc0006903.1_g000008 Rmu_sc0006968.1_g000001 Rmu_sc0011009.1_g000009 Rmu_sc0022852.1_g000002 Rmu_sc0033854.1_g000001 Rmu_ssc0000421.1_g000057 Rmu_ssc0000421.1_g000067 Rmu_ssc0000421.1_g000069 Rmu_ssc0000421.1_g000072 Rmu_ssc0000421.1_g000081 Rmu_ssc0000421.1_g000086
rosa_roxburghii Rroxscaffold_158G00443680 Rroxscaffold_158G00443710 Rroxscaffold_158G00443720 Rroxscaffold_158G00443740 Rroxscaffold_1G00034950 Rroxscaffold_1G00044240 Rroxscaffold_1G00044270 Rroxscaffold_3G00241380 Rroxscaffold_3G00247000 Rroxscaffold_3G00263120 Rroxscaffold_3G00263150 Rroxscaffold_3G00263160 Rroxscaffold_3G00263170 Rroxscaffold_3G00263180 Rroxscaffold_3G00263190 Rroxscaffold_3G00263210 Rroxscaffold_3G00263230 Rroxscaffold_3G00263260 Rroxscaffold_3G00264110 Rroxscaffold_3G00264130 Rroxscaffold_3G00264160 Rroxscaffold_3G00264180 Rroxscaffold_3G00264200 Rroxscaffold_4G00288750 Rroxscaffold_4G00303110 Rroxscaffold_4G00303120 Rroxscaffold_4G00322280 Rroxscaffold_5G00356200 Rroxscaffold_6G00399150 Rroxscaffold_6G00399290 Rroxscaffold_7G00194770
rosa_rugosa Rorug01G0225300 Rorug01G0225400 Rorug01G0225800 Rorug01G0226000 Rorug01G0339400 Rorug01G0451500 Rorug03G0196900 Rorug03G0294900 Rorug04G0107500 Rorug04G0107600 Rorug04G0129700 Rorug04G0178000 Rorug05G0144900.1 Rorug05G0145000 Rorug05G0228000 Rorug05G0228600 Rorug06G0078300 Rorug06G0508000 Rorug06G0508100 Rorug06G0508100 Rorug06G0508400 Rorug06G0513400 Rorug07G0000100 Rorug07G0000200 Rorug07G0000300 Rorug07G0000500 Rorug07G0000800
rosa_samantha Rh1BG060400 Rh1BG210300 Rh1BG210700 Rh1BG210800 Rh1BG309800 Rh1CG223800 Rh1CG224200 Rh1CG325200 Rh1DG237000 Rh1DG237400 Rh1DG341600 Rh2DG365700 Rh3AG212500 Rh3AG248400 Rh3CG239800 Rh3DG239300 Rh4AG169300 Rh4BG166200 Rh4BG240500 Rh4BG240600 Rh4DG163600 Rh5AG249600 Rh5AG249900 Rh5AG250000 Rh5CG283100 Rh5CG283200 Rh5CG283400 Rh5DG259200 Rh5DG259800 Rh6BG197700 Rh6CG197800 Rh6DG189400 Rh7AG114900 Rh7AG115000 Rh7AG115200 Rh7AG115300 Rh7AG115400 Rh7AG115500 Rh7AG123900 Rh7AG124100 Rh7AG124300 Rh7BG117200 Rh7BG117400 Rh7BG118400 Rh7BG125400 Rh7BG125600 Rh7BG125700 Rh7BG125800 Rh7BG125900 Rh7BG126000 Rh7BG126400 Rh7BG126600 Rh7BG126700 Rh7BG166200 Rh7DG118600 Rh7DG118700 Rh7DG118900 Rh7DG119000 Rh7DG119100 Rh7DG127400 Rh7DG127600 Rh7DG127700 Rh7DG127900 Rh7DG128200
rosa_wichuraiana Rw1G013270 Rw1G020790 Rw2G027890 Rw2G028040 Rw3G019240 Rw4G014070 Rw4G020540 Rw5G021320 Rw5G022970 Rw6G016920 Rw7G010020 Rw7G010040 Rw7G010580 Rw7G010590 Rw7G010600 Rw7G010610 Rw7G010620 Rw7G010630 Rw7G010640 Rw7G010690

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 2 cut(s) 250, 311
AfiI CCNNNNNNNGG 1 cut(s) 297
AflII CTTAAG 1 cut(s) 455
AgsI TTSAA 3 cut(s) 88, 283, 335
AhlI ACTAGT 1 cut(s) 136
AjnI CCWGG 2 cut(s) 124, 306
AluBI AGCT 1 cut(s) 340
AluI AGCT 1 cut(s) 340
Alw26I GTCTC 1 cut(s) 98
AoxI GGCC 1 cut(s) 219
ApaI GGGCCC 1 cut(s) 223
ApeKI GCWGC 1 cut(s) 302
ApoI RAATTY 2 cut(s) 250, 311
AspA2I CCTAGG 1 cut(s) 143
AspLEI GCGC 1 cut(s) 290
AspS9I GGNCC 3 cut(s) 128, 219, 220
AvaII GGWCC 1 cut(s) 128
AvrII CCTAGG 1 cut(s) 143
BaeGI GKGCMC 1 cut(s) 223
BanII GRGCYC 1 cut(s) 223
BbvI GCAGC 1 cut(s) 289
BciT130I CCWGG 2 cut(s) 126, 308
BciVI GTATCC 1 cut(s) 459
BcoDI GTCTC 1 cut(s) 98
BcuI ACTAGT 1 cut(s) 136
BfaI CTAG 2 cut(s) 137, 144
BfmI CTRYAG 1 cut(s) 423
BfoI RGCGCY 1 cut(s) 291
BfrI CTTAAG 1 cut(s) 455
BfuI GTATCC 1 cut(s) 459
BisI GCNGC 1 cut(s) 303
BlnI CCTAGG 1 cut(s) 143
BlsI GCNGC 1 cut(s) 304
Bme1390I CCNGG 2 cut(s) 126, 308
Bme18I GGWCC 1 cut(s) 128
BmgT120I GGNCC 3 cut(s) 128, 219, 220
BmiI GGNNCC 1 cut(s) 221
BmrFI CCNGG 2 cut(s) 126, 308
BmrI ACTGGG 1 cut(s) 382
BmuI ACTGGG 1 cut(s) 382
BpmI CTGGAG 1 cut(s) 108
BsaJI CCNNGG 3 cut(s) 143, 223, 306
Bsc4I CCNNNNNNNGG 1 cut(s) 297
Bse1I ACTGG 1 cut(s) 377
BseBI CCWGG 2 cut(s) 126, 308
BseDI CCNNGG 3 cut(s) 143, 223, 306
BseGI GGATG 1 cut(s) 118
BseLI CCNNNNNNNGG 1 cut(s) 297
BseNI ACTGG 1 cut(s) 377
BseSI GKGCMC 1 cut(s) 223
BseXI GCAGC 1 cut(s) 289
BshFI GGCC 1 cut(s) 221
BslFI GGGAC 1 cut(s) 496
BslI CCNNNNNNNGG 1 cut(s) 297
BsmAI GTCTC 1 cut(s) 98
BsmFI GGGAC 1 cut(s) 496
BsnI GGCC 1 cut(s) 221
Bsp120I GGGCCC 1 cut(s) 219
Bsp1286I GDGCHC 1 cut(s) 223
BspANI GGCC 1 cut(s) 221
BspLI GGNNCC 1 cut(s) 221
BspQI GCTCTTC 1 cut(s) 330
BspTI CTTAAG 1 cut(s) 455
BsrI ACTGG 1 cut(s) 377
BssECI CCNNGG 3 cut(s) 143, 223, 306
BssT1I CCWWGG 2 cut(s) 143, 223
Bst2UI CCWGG 2 cut(s) 126, 308
Bst4CI ACNGT 1 cut(s) 185
Bst6I CTCTTC 2 cut(s) 223, 330
BstAFI CTTAAG 1 cut(s) 455
BstC8I GCNNGC 2 cut(s) 77, 342
BstDEI CTNAG 1 cut(s) 489
BstF5I GGATG 1 cut(s) 118
BstH2I RGCGCY 1 cut(s) 291
BstHHI GCGC 1 cut(s) 290
BstMAI GTCTC 1 cut(s) 98
BstMWI GCNNNNNNNGC 1 cut(s) 265
BstNI CCWGG 2 cut(s) 126, 308
BstNSI RCATGY 1 cut(s) 79
BstSCI CCNGG 2 cut(s) 124, 306
BstSFI CTRYAG 1 cut(s) 423
BstSLI GKGCMC 1 cut(s) 223
BstV1I GCAGC 1 cut(s) 289
BsuI GTATCC 1 cut(s) 459
BsuRI GGCC 1 cut(s) 221
BtsCI GGATG 1 cut(s) 118
Cac8I GCNNGC 2 cut(s) 77, 342
CfoI GCGC 1 cut(s) 290
Cfr13I GGNCC 3 cut(s) 128, 219, 220
CviAII CATG 3 cut(s) 76, 216, 412
CviJI RGCY 5 cut(s) 221, 268, 302, 340, 377
CviKI_1 RGCY 5 cut(s) 221, 268, 302, 340, 377
DdeI CTNAG 1 cut(s) 489
Eam1104I CTCTTC 2 cut(s) 223, 330
EarI CTCTTC 2 cut(s) 223, 330
Eco130I CCWWGG 2 cut(s) 143, 223
Eco24I GRGCYC 1 cut(s) 223
Eco47I GGWCC 1 cut(s) 128
EcoO109I RGGNCCY 1 cut(s) 220
EcoRI GAATTC 1 cut(s) 311
EcoRII CCWGG 2 cut(s) 124, 306
EcoT14I CCWWGG 2 cut(s) 143, 223
EcoT22I ATGCAT 1 cut(s) 217
EcoT38I GRGCYC 1 cut(s) 223
ErhI CCWWGG 2 cut(s) 143, 223
FaeI CATG 3 cut(s) 79, 219, 415
FaqI GGGAC 1 cut(s) 496
FatI CATG 3 cut(s) 75, 215, 411
Fnu4HI GCNGC 1 cut(s) 303
FokI GGATG 1 cut(s) 105
FriOI GRGCYC 1 cut(s) 223
Fsp4HI GCNGC 1 cut(s) 303
FspBI CTAG 2 cut(s) 137, 144
GlaI GCGC 1 cut(s) 289
GluI GCNGC 1 cut(s) 303
GsuI CTGGAG 1 cut(s) 108
HaeII RGCGCY 1 cut(s) 291
HaeIII GGCC 1 cut(s) 221
HhaI GCGC 1 cut(s) 290
Hin1II CATG 3 cut(s) 79, 219, 415
Hin6I GCGC 1 cut(s) 288
HinP1I GCGC 1 cut(s) 288
HinfI GANTC 4 cut(s) 233, 419, 484, 497
Hpy188III TCNNGA 2 cut(s) 280, 332
HpyAV CCTTC 1 cut(s) 82
HpyCH4III ACNGT 1 cut(s) 185
HpyCH4V TGCA 7 cut(s) 13, 75, 79, 153, 215, 361, 392
HpyF10VI GCNNNNNNNGC 1 cut(s) 265
HpyF3I CTNAG 1 cut(s) 489
Hsp92II CATG 3 cut(s) 79, 219, 415
HspAI GCGC 1 cut(s) 288
LguI GCTCTTC 1 cut(s) 330
LpnPI CCDG 7 cut(s) 111, 138, 282, 293, 320, 358, 411
Lsp1109I GCAGC 1 cut(s) 289
MaeI CTAG 2 cut(s) 137, 144
MaeIII GTNAC 3 cut(s) 94, 132, 176
MboII GAAGA 6 cut(s) 16, 74, 240, 347, 410, 492
MfeI CAATTG 1 cut(s) 462
MhlI GDGCHC 1 cut(s) 223
MluCI AATT 5 cut(s) 8, 168, 250, 311, 462
MlyI GAGTC 1 cut(s) 478
MnlI CCTC 6 cut(s) 52, 132, 393, 462, 472, 486
Mph1103I ATGCAT 1 cut(s) 217
MseI TTAA 3 cut(s) 171, 210, 456
MspCI CTTAAG 1 cut(s) 455
MspR9I CCNGG 2 cut(s) 126, 308
MunI CAATTG 1 cut(s) 462
MvaI CCWGG 2 cut(s) 126, 308
MwoI GCNNNNNNNGC 1 cut(s) 265
NlaIII CATG 3 cut(s) 79, 219, 415
NlaIV GGNNCC 1 cut(s) 221
NsiI ATGCAT 1 cut(s) 217
NspI RCATGY 1 cut(s) 79
PaeI GCATGC 1 cut(s) 79
PciSI GCTCTTC 1 cut(s) 330
PfeI GAWTC 3 cut(s) 233, 419, 497
PkrI GCNGC 1 cut(s) 304
PleI GAGTC 1 cut(s) 478
PpsI GAGTC 1 cut(s) 478
Psp6I CCWGG 2 cut(s) 124, 306
PspGI CCWGG 2 cut(s) 124, 306
PspN4I GGNNCC 1 cut(s) 221
PspOMI GGGCCC 1 cut(s) 219
PspPI GGNCC 3 cut(s) 128, 219, 220
SapI GCTCTTC 1 cut(s) 330
SaqAI TTAA 3 cut(s) 171, 210, 456
SatI GCNGC 1 cut(s) 303
Sau96I GGNCC 3 cut(s) 128, 219, 220
SchI GAGTC 1 cut(s) 478
ScrFI CCNGG 2 cut(s) 126, 308
SduI GDGCHC 1 cut(s) 223
SetI ASST 5 cut(s) 130, 178, 278, 342, 430
SfcI CTRYAG 1 cut(s) 423
SinI GGWCC 1 cut(s) 128
SmlI CTYRAG 1 cut(s) 455
SmoI CTYRAG 1 cut(s) 455
SpeI ACTAGT 1 cut(s) 136
SphI GCATGC 1 cut(s) 79
Sse9I AATT 5 cut(s) 8, 168, 250, 311, 462
SspI AATATT 1 cut(s) 355
SspMI CTAG 2 cut(s) 137, 144
StyD4I CCNGG 2 cut(s) 124, 306
StyI CCWWGG 2 cut(s) 143, 223
TaaI ACNGT 1 cut(s) 185
TaqI TCGA 1 cut(s) 37
TasI AATT 5 cut(s) 8, 168, 250, 311, 462
TfiI GAWTC 3 cut(s) 233, 419, 497
Tru1I TTAA 3 cut(s) 171, 210, 456
Tru9I TTAA 3 cut(s) 171, 210, 456
TseI GCWGC 1 cut(s) 302
TspDTI ATGAA 2 cut(s) 17, 33
TspGWI ACGGA 1 cut(s) 120
Vha464I CTTAAG 1 cut(s) 455
VpaK11BI GGWCC 1 cut(s) 128
XapI RAATTY 2 cut(s) 250, 311
XceI RCATGY 1 cut(s) 79
XmaJI CCTAGG 1 cut(s) 143
XspI CTAG 2 cut(s) 137, 144
Zsp2I ATGCAT 1 cut(s) 217
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.