Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002373.1

Orthogroup ID

OG0000061

Physical Location & Seq

Genomic Coordinates Reverse (-)

6381 .. 9857

Gene Structure 3477 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002373.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1287 bp

atgcttatgacgcttacgaacgacgtcgtctcgagggcagctctagggaggaagtactacgatgatggggaatttaaggagctctccaccgaatttacggagttggcgggaagtcttcatgttggagacttaattccacggcttggttggttgagccgtcttggtggtttggacgctaaactagtcagtttggctaaacggtacgatgaatttttggatacggtgcttcaagagcatattgataaaacttcagacactagcaacagaaatgatcaaggccttgatgatcagaacgaggataacaaggattttgtggatgttttacttgaaattcagcgggaaaacttgctcaattttcctcttgacagagttagcataaaaggtgtcgtcttggatatgttccttgctgggactgataccacatctacacttctagagtgggcaatggcagagattttgaagcacccaagggtcatgagcaaattgcagaaagaagttaggggtgtaataaaaggagaagaagaaatattaactgaggatgatttggttgatatgcactacttgaaggcagtgattaaggaggctcttcgcttacatcctccatttaccctactattgccaaagatgtcgactcaagatgtgaaaataaacggttatgacattaaggccaacacacaagtcttggtgaatgcctggcagatcgggagagatcccgaatcattcaatgacaaaccagaagagtttgagccggagaggttcttggaggataatagtggtctaagttataaagggactgacttccagtttattccattcggagctggcaggaggatctgtcccgggatccagtttgctacgactgtcaatgagattgctctagcgaatttgctgcacaagtttgattggacattttccggtggagtaagaaatgaggatttagacatgactgaatcatctggcttaacaattcataagaaataccctcttaaagccggctcgaggaaagattcagggctgccagggcccgaggaaagatttggggctgctaggacggccagggcccgaggaaagaatcggggttgccaggtcttgaggaaagaatcggggcagctagggcttgaggaaaaaatcggggcagccatggatcgaggaaagaatcgggacggccagggctcgaggaaatattcaaggcaagatttgaagcatctagagaatagaaatttcctcctaggacgaatgtccaaagagaaaatttggggaattgtgggagtggtcaaattctgctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004497 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005794 GO:0005911 GO:0006629 GO:0006720 GO:0006721 GO:0006722 GO:0008150 GO:0008152 GO:0009058 GO:0009506 GO:0009507 GO:0009536 GO:0009987 GO:0012505 GO:0016020 GO:0016491 GO:0016705 GO:0016709 GO:0019748 GO:0030054 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044255 GO:0044424 GO:0044444 GO:0044464 GO:0044550 GO:0055044 GO:0055114 GO:0071704

KEGG Pathways

Metabolic & Signaling

ko00140 ko00380 ko00590 ko00591 ko00830 ko00980 ko01100 ko04212 ko04726 ko04750 ko04913 ko04917 ko04927 ko04934 ko05204 map00140 map00380 map00590 map00591 map00830 map00980 map01100 map04212 map04726 map04750 map04913 map04917 map04927 map04934 map05204

Pfam Domains

Protein Families

p450

Protein Analysis

428

Amino Acids

48.28

Weight (kDa)

5.89

Isoelectric Point (pI)

34.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000061)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G48270 AT3G48280 AT3G48290 AT3G48290 AT3G48300 AT3G48300 AT3G48310 AT3G48320 AT4G20235 AT4G20235
fragaria_vesca	FvH4_2g12910 FvH4_2g12910 FvH4_2g12910 FvH4_2g12910 FvH4_2g12910 FvH4_2g36190 FvH4_3g14160 FvH4_3g14210 FvH4_3g14260 FvH4_3g14260 FvH4_3g21100 FvH4_3g21380 FvH4_4g24460 FvH4_4g24500 FvH4_5g06571 FvH4_5g06571 FvH4_5g06571 FvH4_5g06571 FvH4_5g06572 FvH4_5g06573 FvH4_5g06574 FvH4_5g06575 FvH4_5g06576 FvH4_5g06577 FvH4_5g06577 FvH4_5g07540 FvH4_5g07550 FvH4_5g07560 FvH4_5g07570 FvH4_5g29491 FvH4_5g29492 FvH4_6g23870 FvH4_6g23880 FvH4_6g26870 FvH4_7g11861 FvH4_7g11862 FvH4_7g13050 FvH4_7g13060 FvH4_7g13080 FvH4_7g13080 FvH4_7g22630 FvH4_7g22650 FvH4_7g22651 FvH4_7g23020
malus_domestica	MD03G1207400.v1.1 MD03G1214800.v1.1 MD03G1218500.v1.1 MD06G1163100.v1.1 MD06G1163300.v1.1 MD06G1163400.v1.1 MD06G1163500.v1.1 MD06G1163600.v1.1 MD06G1163800.v1.1 MD06G1164000.v1.1 MD06G1164100.v1.1 MD06G1224400.v1.1 MD08G1222800.v1.1 MD08G1222900.v1.1 MD08G1223100.v1.1 MD11G1091500.v1.1 MD11G1091800.v1.1 MD14G1163200.v1.1 MD14G1169000.v1.1 MD15G1207200.v1.1 MD15G1207300.v1.1 MD17G1259400.v1.1
prunus_persica	Prupe.4G198100_v2.0.a1 Prupe.4G199100_v2.0.a1 Prupe.4G199400_v2.0.a1 Prupe.4G199800_v2.0.a1 Prupe.4G225200_v2.0.a1 Prupe.4G239100_v2.0.a1 Prupe.5G156600_v2.0.a1 Prupe.5G163500_v2.0.a1 Prupe.7G209500_v2.0.a1 Prupe.I003400_v2.0.a1
pyrus_communis	pycom03g16340 pycom06g14600 pycom06g14610 pycom06g14620 pycom06g14630 pycom06g14640 pycom06g14670 pycom06g14690 pycom08g19390 pycom08g19400 pycom08g19410 pycom11g07600 pycom11g07610 pycom11g07620 pycom11g07660 pycom14g13580 pycom14g14080 pycom14g14100 pycom14g14110 pycom15g18380 pycom17g26080
rosa_chinensis	RchiOBHm_Chr1g0339441 RchiOBHm_Chr1g0339451 RchiOBHm_Chr1g0352191 RchiOBHm_Chr1g0368221 RchiOBHm_Chr2g0129531 RchiOBHm_Chr2g0129541 RchiOBHm_Chr3g0477631 RchiOBHm_Chr3g0482551 RchiOBHm_Chr3g0482561 RchiOBHm_Chr3g0482571 RchiOBHm_Chr4g0411601 RchiOBHm_Chr4g0422181 RchiOBHm_Chr5g0036661 RchiOBHm_Chr5g0036731 RchiOBHm_Chr6g0274021 RchiOBHm_Chr7g0190921 RchiOBHm_Chr7g0190931 RchiOBHm_Chr7g0190941 RchiOBHm_Chr7g0190951 RchiOBHm_Chr7g0190961 RchiOBHm_Chr7g0190971 RchiOBHm_Chr7g0191001 RchiOBHm_Chr7g0191011 RchiOBHm_Chr7g0191021 RchiOBHm_Chr7g0192181 RchiOBHm_Chr7g0192191 RchiOBHm_Chr7g0192201 RchiOBHm_Chr7g0192221 RchiOBHm_Chr7g0192231 RchiOBHm_Chr7g0192281 RchiOBHm_Chr7g0197311
rosa_laevigata	RLG00000003942 RLG00000004345 RLG00000004379 RLG00000004383 RLG00000004384 RLG00000004385 RLG00000004387 RLG00000004388 RLG00000004389 RLG00000004480 RLG00000004481 RLG00000004482 RLG00000004483 RLG00000004485 RLG00000008342 RLG00000008401 RLG00000013583 RLG00000017044 RLG00000027229 RLG00000028349 RLG00000028350 RLG00000028353 RLG00000028820 RLG00000033707 RLG00000033710
rosa_multiflora	Rmu_co8020340.1_g000001 Rmu_co8096640.1_g000001 Rmu_co8214930.1_g000001 Rmu_co8223272.1_g000001 Rmu_co8282535.1_g000001 Rmu_co8343567.1_g000001 Rmu_co8404191.1_g000001 Rmu_co8455157.1_g000001 Rmu_sc0000062.1_g000028 Rmu_sc0000082.1_g000091 Rmu_sc0000509.1_g000017 Rmu_sc0000775.1_g000001 Rmu_sc0000999.1_g000034 Rmu_sc0001559.1_g000004 Rmu_sc0001559.1_g000009 Rmu_sc0002164.1_g000001 Rmu_sc0002164.1_g000005 Rmu_sc0002164.1_g000007 Rmu_sc0002164.1_g000008 Rmu_sc0002164.1_g000009 Rmu_sc0002164.1_g000019 Rmu_sc0002247.1_g000009 Rmu_sc0002373.1_g000002 Rmu_sc0002373.1_g000003 Rmu_sc0002944.1_g000059 Rmu_sc0003930.1_g000004 Rmu_sc0004958.1_g000001 Rmu_sc0005197.1_g000014 Rmu_sc0005898.1_g000008 Rmu_sc0005898.1_g000009 Rmu_sc0005898.1_g000015 Rmu_sc0006059.1_g000004 Rmu_sc0006059.1_g000010 Rmu_sc0006903.1_g000007 Rmu_sc0006903.1_g000008 Rmu_sc0006968.1_g000001 Rmu_sc0011009.1_g000009 Rmu_sc0022852.1_g000002 Rmu_sc0033854.1_g000001 Rmu_ssc0000421.1_g000057 Rmu_ssc0000421.1_g000067 Rmu_ssc0000421.1_g000069 Rmu_ssc0000421.1_g000072 Rmu_ssc0000421.1_g000081 Rmu_ssc0000421.1_g000086
rosa_roxburghii	Rroxscaffold_158G00443680 Rroxscaffold_158G00443710 Rroxscaffold_158G00443720 Rroxscaffold_158G00443740 Rroxscaffold_1G00034950 Rroxscaffold_1G00044240 Rroxscaffold_1G00044270 Rroxscaffold_3G00241380 Rroxscaffold_3G00247000 Rroxscaffold_3G00263120 Rroxscaffold_3G00263150 Rroxscaffold_3G00263160 Rroxscaffold_3G00263170 Rroxscaffold_3G00263180 Rroxscaffold_3G00263190 Rroxscaffold_3G00263210 Rroxscaffold_3G00263230 Rroxscaffold_3G00263260 Rroxscaffold_3G00264110 Rroxscaffold_3G00264130 Rroxscaffold_3G00264160 Rroxscaffold_3G00264180 Rroxscaffold_3G00264200 Rroxscaffold_4G00288750 Rroxscaffold_4G00303110 Rroxscaffold_4G00303120 Rroxscaffold_4G00322280 Rroxscaffold_5G00356200 Rroxscaffold_6G00399150 Rroxscaffold_6G00399290 Rroxscaffold_7G00194770
rosa_rugosa	Rorug01G0225300 Rorug01G0225400 Rorug01G0225800 Rorug01G0226000 Rorug01G0339400 Rorug01G0451500 Rorug03G0196900 Rorug03G0294900 Rorug04G0107500 Rorug04G0107600 Rorug04G0129700 Rorug04G0178000 Rorug05G0144900.1 Rorug05G0145000 Rorug05G0228000 Rorug05G0228600 Rorug06G0078300 Rorug06G0508000 Rorug06G0508100 Rorug06G0508100 Rorug06G0508400 Rorug06G0513400 Rorug07G0000100 Rorug07G0000200 Rorug07G0000300 Rorug07G0000500 Rorug07G0000800
rosa_samantha	Rh1BG060400 Rh1BG210300 Rh1BG210700 Rh1BG210800 Rh1BG309800 Rh1CG223800 Rh1CG224200 Rh1CG325200 Rh1DG237000 Rh1DG237400 Rh1DG341600 Rh2DG365700 Rh3AG212500 Rh3AG248400 Rh3CG239800 Rh3DG239300 Rh4AG169300 Rh4BG166200 Rh4BG240500 Rh4BG240600 Rh4DG163600 Rh5AG249600 Rh5AG249900 Rh5AG250000 Rh5CG283100 Rh5CG283200 Rh5CG283400 Rh5DG259200 Rh5DG259800 Rh6BG197700 Rh6CG197800 Rh6DG189400 Rh7AG114900 Rh7AG115000 Rh7AG115200 Rh7AG115300 Rh7AG115400 Rh7AG115500 Rh7AG123900 Rh7AG124100 Rh7AG124300 Rh7BG117200 Rh7BG117400 Rh7BG118400 Rh7BG125400 Rh7BG125600 Rh7BG125700 Rh7BG125800 Rh7BG125900 Rh7BG126000 Rh7BG126400 Rh7BG126600 Rh7BG126700 Rh7BG166200 Rh7DG118600 Rh7DG118700 Rh7DG118900 Rh7DG119000 Rh7DG119100 Rh7DG127400 Rh7DG127600 Rh7DG127700 Rh7DG127900 Rh7DG128200
rosa_wichuraiana	Rw1G013270 Rw1G020790 Rw2G027890 Rw2G028040 Rw3G019240 Rw4G014070 Rw4G020540 Rw5G021320 Rw5G022970 Rw6G016920 Rw7G010020 Rw7G010040 Rw7G010580 Rw7G010590 Rw7G010600 Rw7G010610 Rw7G010620 Rw7G010630 Rw7G010640 Rw7G010690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	786
AatII	GACGTC	1 cut(s)	27
AccB7I	CCANNNNNTGG	1 cut(s)	143
AccI	GTMKAC	1 cut(s)	629
AciI	CCGC	2 cut(s)	107, 337
AclWI	GGATC	5 cut(s)	704, 838, 839, 851, 1152
AcoI	YGGCCR	2 cut(s)	1053, 1165
AcsI	RAATTY	8 cut(s)	71, 92, 209, 330, 883, 1219, 1251, 1277
AcuI	CTGAAG	1 cut(s)	234
AcyI	GRCGYC	1 cut(s)	24
AfaI	GTAC	2 cut(s)	56, 203
AfiI	CCNNNNNNNGG	2 cut(s)	143, 999
AgsI	TTSAA	7 cut(s)	230, 329, 460, 565, 724, 1188, 1201
AhlI	ACTAGT	1 cut(s)	181
AjnI	CCWGG	5 cut(s)	692, 1018, 1055, 1083, 1167
AluBI	AGCT	4 cut(s)	41, 82, 821, 1111
AluI	AGCT	4 cut(s)	41, 82, 821, 1111
Alw21I	GWGCWC	1 cut(s)	84
Alw26I	GTCTC	2 cut(s)	34, 120
AlwI	GGATC	5 cut(s)	704, 838, 839, 851, 1152
Ama87I	CYCGRG	6 cut(s)	31, 839, 997, 1025, 1062, 1174
AoxI	GGCC	6 cut(s)	277, 666, 1022, 1053, 1059, 1165
ApaI	GGGCCC	2 cut(s)	1026, 1063
ApeKI	GCWGC	6 cut(s)	38, 889, 1015, 1043, 1108, 1136
ApoI	RAATTY	8 cut(s)	71, 92, 209, 330, 883, 1219, 1251, 1277
AspA2I	CCTAGG	1 cut(s)	1228
AspS9I	GGNCC	4 cut(s)	1022, 1023, 1059, 1060
AsuC2I	CCSGG	2 cut(s)	840, 841
AsuHPI	GGTGA	1 cut(s)	697
AvaI	CYCGRG	6 cut(s)	31, 839, 997, 1025, 1062, 1174
AvrII	CCTAGG	1 cut(s)	1228
BaeGI	GKGCMC	2 cut(s)	1026, 1063
BamHI	GGATCC	1 cut(s)	843
BanII	GRGCYC	4 cut(s)	84, 1026, 1063, 1175
BbsI	GAAGAC	1 cut(s)	107
Bbv12I	GWGCWC	1 cut(s)	84
BbvI	GCAGC	6 cut(s)	50, 876, 1002, 1030, 1120, 1148
BccI	CCATC	1 cut(s)	59
BceAI	ACGGC	4 cut(s)	141, 155, 1068, 1180
BcgI	CGANNNNNNTGC	2 cut(s)	871, 905
BciT130I	CCWGG	5 cut(s)	694, 1020, 1057, 1085, 1169
BciVI	GTATCC	1 cut(s)	211
BclI	TGATCA	2 cut(s)	271, 286
BcnI	CCSGG	2 cut(s)	840, 841
BcoDI	GTCTC	2 cut(s)	34, 120
BcuI	ACTAGT	1 cut(s)	181
BfaI	CTAG	9 cut(s)	44, 182, 258, 434, 878, 1047, 1112, 1208, 1229
BfuI	GTATCC	1 cut(s)	211
BisI	GCNGC	6 cut(s)	39, 890, 1016, 1044, 1109, 1137
BlnI	CCTAGG	1 cut(s)	1228
BlsI	GCNGC	6 cut(s)	40, 891, 1017, 1045, 1110, 1138
BmcAI	AGTACT	1 cut(s)	56
Bme1390I	CCNGG	7 cut(s)	694, 840, 841, 1020, 1057, 1085, 1169
BmeT110I	CYCGRG	6 cut(s)	31, 839, 997, 1025, 1062, 1174
BmgT120I	GGNCC	4 cut(s)	1022, 1023, 1059, 1060
BmiI	GGNNCC	3 cut(s)	845, 1024, 1061
BmrFI	CCNGG	7 cut(s)	694, 840, 841, 1020, 1057, 1085, 1169
BmsI	GCATC	1 cut(s)	1213
BoxI	GACNNNNGTC	1 cut(s)	1237
BpiI	GAAGAC	1 cut(s)	107
BplI	GAGNNNNNCTC	2 cut(s)	25, 57
BpuEI	CTTGAG	3 cut(s)	618, 1111, 1139
BpuMI	CCSGG	2 cut(s)	840, 841
BsaHI	GRCGYC	1 cut(s)	24
BsaWI	WCCGGW	1 cut(s)	914
BsaXI	ACNNNNNCTCC	2 cut(s)	820, 850
Bsc4I	CCNNNNNNNGG	2 cut(s)	143, 999
Bse118I	RCCGGY	1 cut(s)	992
Bse1I	ACTGG	2 cut(s)	802, 847
Bse3DI	GCAATG	1 cut(s)	450
BseBI	CCWGG	5 cut(s)	694, 1020, 1057, 1085, 1169
BseGI	GGATG	3 cut(s)	322, 544, 595
BseLI	CCNNNNNNNGG	2 cut(s)	143, 999
BseMI	GCAATG	1 cut(s)	450
BseMII	CTCAG	1 cut(s)	525
BseNI	ACTGG	2 cut(s)	802, 847
BseSI	GKGCMC	2 cut(s)	1026, 1063
BseXI	GCAGC	6 cut(s)	50, 876, 1002, 1030, 1120, 1148
BseYI	CCCAGC	1 cut(s)	407
BsgI	GTGCAG	1 cut(s)	875
BshFI	GGCC	6 cut(s)	279, 668, 1024, 1055, 1061, 1167
BsiHKAI	GWGCWC	1 cut(s)	84
BsiHKCI	CYCGRG	6 cut(s)	31, 839, 997, 1025, 1062, 1174
BsiSI	CCGG	4 cut(s)	749, 840, 915, 993
BslFI	GGGAC	4 cut(s)	424, 805, 822, 1175
BslI	CCNNNNNNNGG	2 cut(s)	143, 999
BsmAI	GTCTC	2 cut(s)	34, 120
BsmBI	CGTCTC	1 cut(s)	34
BsmFI	GGGAC	4 cut(s)	424, 805, 822, 1175
BsmI	GAATGC	1 cut(s)	694
BsnI	GGCC	6 cut(s)	279, 668, 1024, 1055, 1061, 1167
BsoBI	CYCGRG	6 cut(s)	31, 839, 997, 1025, 1062, 1174
Bsp120I	GGGCCC	2 cut(s)	1022, 1059
Bsp1286I	GDGCHC	4 cut(s)	84, 1026, 1063, 1175
Bsp143I	GATC	7 cut(s)	271, 286, 699, 709, 831, 843, 1144
Bsp19I	CCATGG	1 cut(s)	1140
BspACI	CCGC	2 cut(s)	107, 337
BspANI	GGCC	6 cut(s)	279, 668, 1024, 1055, 1061, 1167
BspCNI	CTCAG	1 cut(s)	526
BspHI	TCATGA	1 cut(s)	474
BspLI	GGNNCC	3 cut(s)	845, 1024, 1061
BspPI	GGATC	5 cut(s)	704, 838, 839, 851, 1152
BspQI	GCTCTTC	1 cut(s)	591
BsrDI	GCAATG	1 cut(s)	450
BsrFI	RCCGGY	1 cut(s)	992
BsrI	ACTGG	2 cut(s)	802, 847
BssAI	RCCGGY	1 cut(s)	992
BssMI	GATC	7 cut(s)	271, 286, 699, 709, 831, 843, 1144
BssNI	GRCGYC	1 cut(s)	24
BssT1I	CCWWGG	3 cut(s)	467, 1140, 1228
Bst2UI	CCWGG	5 cut(s)	694, 1020, 1057, 1085, 1169
Bst4CI	ACNGT	4 cut(s)	201, 223, 653, 862
Bst6I	CTCTTC	2 cut(s)	591, 732
BstACI	GRCGYC	1 cut(s)	24
BstC8I	GCNNGC	2 cut(s)	823, 994
BstDEI	CTNAG	2 cut(s)	534, 779
BstDSI	CCRYGG	2 cut(s)	137, 1140
BstF5I	GGATG	3 cut(s)	322, 544, 595
BstKTI	GATC	7 cut(s)	274, 289, 702, 712, 834, 846, 1147
BstMAI	GTCTC	2 cut(s)	34, 120
BstMBI	GATC	7 cut(s)	271, 286, 699, 709, 831, 843, 1144
BstMWI	GCNNNNNNNGC	5 cut(s)	10, 232, 1021, 1052, 1114
BstNI	CCWGG	5 cut(s)	694, 1020, 1057, 1085, 1169
BstPAI	GACNNNNGTC	1 cut(s)	1237
BstSCI	CCNGG	7 cut(s)	692, 838, 839, 1018, 1055, 1083, 1167
BstSLI	GKGCMC	2 cut(s)	1026, 1063
BstV1I	GCAGC	6 cut(s)	50, 876, 1002, 1030, 1120, 1148
BstV2I	GAAGAC	1 cut(s)	107
BstX2I	RGATCY	3 cut(s)	709, 831, 843
BstYI	RGATCY	3 cut(s)	709, 831, 843
BsuI	GTATCC	1 cut(s)	211
BsuRI	GGCC	6 cut(s)	279, 668, 1024, 1055, 1061, 1167
BtgI	CCRYGG	2 cut(s)	137, 1140
BtsCI	GGATG	3 cut(s)	322, 544, 595
BtsI	GCAGTG	1 cut(s)	576
BtsIMutI	CAGTG	1 cut(s)	576
Cac8I	GCNNGC	2 cut(s)	823, 994
CciI	TCATGA	1 cut(s)	474
Cfr10I	RCCGGY	1 cut(s)	992
Cfr13I	GGNCC	4 cut(s)	1022, 1023, 1059, 1060
Cfr9I	CCCGGG	1 cut(s)	839
CseI	GACGC	2 cut(s)	19, 182
Csp6I	GTAC	2 cut(s)	55, 202
CviAII	CATG	4 cut(s)	119, 475, 943, 1141
CviQI	GTAC	2 cut(s)	55, 202
DdeI	CTNAG	2 cut(s)	534, 779
DpnI	GATC	7 cut(s)	273, 288, 701, 711, 833, 845, 1146
DpnII	GATC	7 cut(s)	271, 286, 699, 709, 831, 843, 1144
EaeI	YGGCCR	2 cut(s)	1053, 1165
Eam1104I	CTCTTC	2 cut(s)	591, 732
EarI	CTCTTC	2 cut(s)	591, 732
Ecl136II	GAGCTC	1 cut(s)	82
Eco130I	CCWWGG	3 cut(s)	467, 1140, 1228
Eco147I	AGGCCT	1 cut(s)	279
Eco24I	GRGCYC	4 cut(s)	84, 1026, 1063, 1175
Eco53kI	GAGCTC	1 cut(s)	82
Eco57I	CTGAAG	1 cut(s)	234
Eco88I	CYCGRG	6 cut(s)	31, 839, 997, 1025, 1062, 1174
EcoICRI	GAGCTC	1 cut(s)	82
EcoO109I	RGGNCCY	2 cut(s)	1022, 1059
EcoRII	CCWGG	5 cut(s)	692, 1018, 1055, 1083, 1167
EcoT14I	CCWWGG	3 cut(s)	467, 1140, 1228
EcoT38I	GRGCYC	4 cut(s)	84, 1026, 1063, 1175
ErhI	CCWWGG	3 cut(s)	467, 1140, 1228
Esp3I	CGTCTC	1 cut(s)	34
FaeI	CATG	4 cut(s)	122, 478, 946, 1144
FaqI	GGGAC	4 cut(s)	424, 805, 822, 1175
FatI	CATG	4 cut(s)	118, 474, 942, 1140
FauI	CCCGC	2 cut(s)	100, 330
FbaI	TGATCA	2 cut(s)	271, 286
FblI	GTMKAC	1 cut(s)	629
Fnu4HI	GCNGC	6 cut(s)	39, 890, 1016, 1044, 1109, 1137
FokI	GGATG	3 cut(s)	329, 551, 582
FriOI	GRGCYC	4 cut(s)	84, 1026, 1063, 1175
Fsp4HI	GCNGC	6 cut(s)	39, 890, 1016, 1044, 1109, 1137
FspBI	CTAG	9 cut(s)	44, 182, 258, 434, 878, 1047, 1112, 1208, 1229
GluI	GCNGC	6 cut(s)	39, 890, 1016, 1044, 1109, 1137
GsaI	CCCAGC	1 cut(s)	411
HaeIII	GGCC	6 cut(s)	279, 668, 1024, 1055, 1061, 1167
HapII	CCGG	4 cut(s)	749, 840, 915, 993
HgaI	GACGC	2 cut(s)	19, 182
Hin1I	GRCGYC	1 cut(s)	24
Hin1II	CATG	4 cut(s)	122, 478, 946, 1144
HincII	GTYRAC	1 cut(s)	630
HindII	GTYRAC	1 cut(s)	630
HinfI	GANTC	7 cut(s)	631, 716, 950, 1007, 1072, 1100, 1156
HpaII	CCGG	4 cut(s)	749, 840, 915, 993
HphI	GGTGA	1 cut(s)	697
Hpy166II	GTNNAC	1 cut(s)	630
Hpy188I	TCNGA	3 cut(s)	253, 291, 818
Hpy8I	GTNNAC	1 cut(s)	630
Hpy99I	CGWCG	2 cut(s)	26, 29
HpyAV	CCTTC	1 cut(s)	559
HpyCH4III	ACNGT	4 cut(s)	201, 223, 653, 862
HpyCH4IV	ACGT	1 cut(s)	24
HpyCH4V	TGCA	3 cut(s)	487, 556, 892
HpyF10VI	GCNNNNNNNGC	5 cut(s)	10, 232, 1021, 1052, 1114
HpyF3I	CTNAG	2 cut(s)	534, 779
HpySE526I	ACGT	1 cut(s)	24
Hsp92I	GRCGYC	1 cut(s)	24
Hsp92II	CATG	4 cut(s)	122, 478, 946, 1144
KroI	GCCGGC	1 cut(s)	992
KroNI	GCCGGC	1 cut(s)	994
Ksp22I	TGATCA	2 cut(s)	271, 286
Kzo9I	GATC	7 cut(s)	271, 286, 699, 709, 831, 843, 1144
LguI	GCTCTTC	1 cut(s)	591
LmnI	GCTCC	2 cut(s)	79, 818
Lsp1109I	GCAGC	6 cut(s)	50, 876, 1002, 1030, 1120, 1148
LweI	GCATC	1 cut(s)	1213
MaeI	CTAG	9 cut(s)	44, 182, 258, 434, 878, 1047, 1112, 1208, 1229
MaeII	ACGT	1 cut(s)	24
MalI	GATC	7 cut(s)	273, 288, 701, 711, 833, 845, 1146
MboI	GATC	7 cut(s)	271, 286, 699, 709, 831, 843, 1144
MboII	GAAGA	5 cut(s)	107, 530, 533, 578, 749
MflI	RGATCY	3 cut(s)	709, 831, 843
MhlI	GDGCHC	4 cut(s)	84, 1026, 1063, 1175
MlyI	GAGTC	1 cut(s)	625
MmeI	TCCRAC	1 cut(s)	103
MroNI	GCCGGC	1 cut(s)	992
MseI	TTAA	7 cut(s)	75, 131, 530, 576, 663, 962, 987
MspA1I	CMGCKG	1 cut(s)	337
MspI	CCGG	4 cut(s)	749, 840, 915, 993
MspR9I	CCNGG	7 cut(s)	694, 840, 841, 1020, 1057, 1085, 1169
Mva1269I	GAATGC	1 cut(s)	694
MvaI	CCWGG	5 cut(s)	694, 1020, 1057, 1085, 1169
MwoI	GCNNNNNNNGC	5 cut(s)	10, 232, 1021, 1052, 1114
NaeI	GCCGGC	1 cut(s)	994
NciI	CCSGG	2 cut(s)	840, 841
NcoI	CCATGG	1 cut(s)	1140
NdeII	GATC	7 cut(s)	271, 286, 699, 709, 831, 843, 1144
NgoMIV	GCCGGC	1 cut(s)	992
NlaIII	CATG	4 cut(s)	122, 478, 946, 1144
NlaIV	GGNNCC	3 cut(s)	845, 1024, 1061
PaeR7I	CTCGAG	3 cut(s)	31, 997, 1174
PagI	TCATGA	1 cut(s)	474
PceI	AGGCCT	1 cut(s)	279
PciSI	GCTCTTC	1 cut(s)	591
PctI	GAATGC	1 cut(s)	694
PdiI	GCCGGC	1 cut(s)	994
PfeI	GAWTC	6 cut(s)	716, 950, 1007, 1072, 1100, 1156
PflFI	GACNNNGTC	1 cut(s)	26
PflMI	CCANNNNNTGG	1 cut(s)	143
PkrI	GCNGC	6 cut(s)	40, 891, 1017, 1045, 1110, 1138
PleI	GAGTC	1 cut(s)	625
PpsI	GAGTC	1 cut(s)	625
PshAI	GACNNNNGTC	1 cut(s)	1237
PsiI	TTATAA	1 cut(s)	786
Psp124BI	GAGCTC	1 cut(s)	84
Psp6I	CCWGG	5 cut(s)	692, 1018, 1055, 1083, 1167
PspFI	CCCAGC	1 cut(s)	407
PspGI	CCWGG	5 cut(s)	692, 1018, 1055, 1083, 1167
PspN4I	GGNNCC	3 cut(s)	845, 1024, 1061
PspOMI	GGGCCC	2 cut(s)	1022, 1059
PspPI	GGNCC	4 cut(s)	1022, 1023, 1059, 1060
PspXI	VCTCGAGB	2 cut(s)	997, 1174
PsuI	RGATCY	3 cut(s)	709, 831, 843
PsyI	GACNNNGTC	1 cut(s)	26
RsaI	GTAC	2 cut(s)	56, 203
RsaNI	GTAC	2 cut(s)	55, 202
SacI	GAGCTC	1 cut(s)	84
SalI	GTCGAC	1 cut(s)	628
SapI	GCTCTTC	1 cut(s)	591
SaqAI	TTAA	7 cut(s)	75, 131, 530, 576, 663, 962, 987
SatI	GCNGC	6 cut(s)	39, 890, 1016, 1044, 1109, 1137
Sau3AI	GATC	7 cut(s)	271, 286, 699, 709, 831, 843, 1144
Sau96I	GGNCC	4 cut(s)	1022, 1023, 1059, 1060
ScaI	AGTACT	1 cut(s)	56
SchI	GAGTC	1 cut(s)	625
ScrFI	CCNGG	7 cut(s)	694, 840, 841, 1020, 1057, 1085, 1169
SduI	GDGCHC	4 cut(s)	84, 1026, 1063, 1175
SetI	ASST	8 cut(s)	27, 43, 84, 385, 758, 823, 1089, 1113
SfaNI	GCATC	1 cut(s)	1213
Sfr274I	CTCGAG	3 cut(s)	31, 997, 1174
SlaI	CTCGAG	3 cut(s)	31, 997, 1174
SmaI	CCCGGG	1 cut(s)	841
SmlI	CTYRAG	6 cut(s)	31, 633, 997, 1090, 1118, 1174
SmoI	CTYRAG	6 cut(s)	31, 633, 997, 1090, 1118, 1174
SpeI	ACTAGT	1 cut(s)	181
SseBI	AGGCCT	1 cut(s)	279
SsiI	CCGC	2 cut(s)	107, 337
SspI	AATATT	2 cut(s)	528, 1184
SspMI	CTAG	9 cut(s)	44, 182, 258, 434, 878, 1047, 1112, 1208, 1229
SstI	GAGCTC	1 cut(s)	84
StuI	AGGCCT	1 cut(s)	279
StyD4I	CCNGG	7 cut(s)	692, 838, 839, 1018, 1055, 1083, 1167
StyI	CCWWGG	3 cut(s)	467, 1140, 1228
TaaI	ACNGT	4 cut(s)	201, 223, 653, 862
TaiI	ACGT	1 cut(s)	27
TaqI	TCGA	5 cut(s)	32, 629, 998, 1147, 1175
TatI	WGTACW	1 cut(s)	54
TfiI	GAWTC	6 cut(s)	716, 950, 1007, 1072, 1100, 1156
Tru1I	TTAA	7 cut(s)	75, 131, 530, 576, 663, 962, 987
Tru9I	TTAA	7 cut(s)	75, 131, 530, 576, 663, 962, 987
TscAI	CASTG	1 cut(s)	576
TseI	GCWGC	6 cut(s)	38, 889, 1015, 1043, 1108, 1136
TspDTI	ATGAA	3 cut(s)	107, 222, 959
TspGWI	ACGGA	1 cut(s)	113
TspMI	CCCGGG	1 cut(s)	839
TspRI	CASTG	1 cut(s)	576
Tth111I	GACNNNGTC	1 cut(s)	26
Van91I	CCANNNNNTGG	1 cut(s)	143
XapI	RAATTY	8 cut(s)	71, 92, 209, 330, 883, 1219, 1251, 1277
XbaI	TCTAGA	2 cut(s)	433, 1207
XcmI	CCANNNNNNNNNTGG	1 cut(s)	144
XhoI	CTCGAG	3 cut(s)	31, 997, 1174
XmaI	CCCGGG	1 cut(s)	839
XmaJI	CCTAGG	1 cut(s)	1228
XmiI	GTMKAC	1 cut(s)	629
XspI	CTAG	9 cut(s)	44, 182, 258, 434, 878, 1047, 1112, 1208, 1229
ZraI	GACGTC	1 cut(s)	25
ZrmI	AGTACT	1 cut(s)	56

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.