Rh5AG250000

Cytochrome p450

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
Physical Location & Seq
Reverse (-)
31691260 .. 31691658
399 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG250000.1

Sequence Viewer

Length: 399 bp
ATGCCACATCTCCTGCAAATGCTGGAACTGAAACTAAATCAATTCTTCTTGATCCCTTTGGAATCATTTTCCTTCAAATATTTACTACTTTCGGCCATTTTCCTCATTCTCTTATACAGATGGTCCTCTCATAGAAACTCATCTGTACCACCTTCTCCACCAAAACTACCCATCATTGGAAATCTTCATCAAGTAGGGTTGCTCCCTCATCGCTCACTTCAAACCTTATCTCAACGCCATGGGCCTGTCATGCTGCTCCATTTCGGAAGCAGGCCAGTCCTTGTCATCTCGTCAGCTGAGGCTGCTTCCCAGATCTTCAAAACCCATGACTTAATATTCTCCGACAGACCCAAGTTCATCTTCTTTGAGAGGTCATCTACAACTACAAGGACATTGTAA

Protein Analysis

132

Amino Acids

15.15

Weight (kDa)

10.63

Isoelectric Point (pI)

51.79

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 50 - 126 3.3e-12 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000061)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G48270 AT3G48280 AT3G48290 AT3G48290 AT3G48300 AT3G48300 AT3G48310 AT3G48320 AT4G20235 AT4G20235
fragaria_vesca FvH4_2g12910 FvH4_2g12910 FvH4_2g12910 FvH4_2g12910 FvH4_2g12910 FvH4_2g36190 FvH4_3g14160 FvH4_3g14210 FvH4_3g14260 FvH4_3g14260 FvH4_3g21100 FvH4_3g21380 FvH4_4g24460 FvH4_4g24500 FvH4_5g06571 FvH4_5g06571 FvH4_5g06571 FvH4_5g06571 FvH4_5g06572 FvH4_5g06573 FvH4_5g06574 FvH4_5g06575 FvH4_5g06576 FvH4_5g06577 FvH4_5g06577 FvH4_5g07540 FvH4_5g07550 FvH4_5g07560 FvH4_5g07570 FvH4_5g29491 FvH4_5g29492 FvH4_6g23870 FvH4_6g23880 FvH4_6g26870 FvH4_7g11861 FvH4_7g11862 FvH4_7g13050 FvH4_7g13060 FvH4_7g13080 FvH4_7g13080 FvH4_7g22630 FvH4_7g22650 FvH4_7g22651 FvH4_7g23020
malus_domestica MD03G1207400.v1.1 MD03G1214800.v1.1 MD03G1218500.v1.1 MD06G1163100.v1.1 MD06G1163300.v1.1 MD06G1163400.v1.1 MD06G1163500.v1.1 MD06G1163600.v1.1 MD06G1163800.v1.1 MD06G1164000.v1.1 MD06G1164100.v1.1 MD06G1224400.v1.1 MD08G1222800.v1.1 MD08G1222900.v1.1 MD08G1223100.v1.1 MD11G1091500.v1.1 MD11G1091800.v1.1 MD14G1163200.v1.1 MD14G1169000.v1.1 MD15G1207200.v1.1 MD15G1207300.v1.1 MD17G1259400.v1.1
prunus_persica Prupe.4G198100_v2.0.a1 Prupe.4G199100_v2.0.a1 Prupe.4G199400_v2.0.a1 Prupe.4G199800_v2.0.a1 Prupe.4G225200_v2.0.a1 Prupe.4G239100_v2.0.a1 Prupe.5G156600_v2.0.a1 Prupe.5G163500_v2.0.a1 Prupe.7G209500_v2.0.a1 Prupe.I003400_v2.0.a1
pyrus_communis pycom03g16340 pycom06g14600 pycom06g14610 pycom06g14620 pycom06g14630 pycom06g14640 pycom06g14670 pycom06g14690 pycom08g19390 pycom08g19400 pycom08g19410 pycom11g07600 pycom11g07610 pycom11g07620 pycom11g07660 pycom14g13580 pycom14g14080 pycom14g14100 pycom14g14110 pycom15g18380 pycom17g26080
rosa_chinensis RchiOBHm_Chr1g0339441 RchiOBHm_Chr1g0339451 RchiOBHm_Chr1g0352191 RchiOBHm_Chr1g0368221 RchiOBHm_Chr2g0129531 RchiOBHm_Chr2g0129541 RchiOBHm_Chr3g0477631 RchiOBHm_Chr3g0482551 RchiOBHm_Chr3g0482561 RchiOBHm_Chr3g0482571 RchiOBHm_Chr4g0411601 RchiOBHm_Chr4g0422181 RchiOBHm_Chr5g0036661 RchiOBHm_Chr5g0036731 RchiOBHm_Chr6g0274021 RchiOBHm_Chr7g0190921 RchiOBHm_Chr7g0190931 RchiOBHm_Chr7g0190941 RchiOBHm_Chr7g0190951 RchiOBHm_Chr7g0190961 RchiOBHm_Chr7g0190971 RchiOBHm_Chr7g0191001 RchiOBHm_Chr7g0191011 RchiOBHm_Chr7g0191021 RchiOBHm_Chr7g0192181 RchiOBHm_Chr7g0192191 RchiOBHm_Chr7g0192201 RchiOBHm_Chr7g0192221 RchiOBHm_Chr7g0192231 RchiOBHm_Chr7g0192281 RchiOBHm_Chr7g0197311
rosa_laevigata RLG00000003942 RLG00000004345 RLG00000004379 RLG00000004383 RLG00000004384 RLG00000004385 RLG00000004387 RLG00000004388 RLG00000004389 RLG00000004480 RLG00000004481 RLG00000004482 RLG00000004483 RLG00000004485 RLG00000008342 RLG00000008401 RLG00000013583 RLG00000017044 RLG00000027229 RLG00000028349 RLG00000028350 RLG00000028353 RLG00000028820 RLG00000033707 RLG00000033710
rosa_multiflora Rmu_co8020340.1_g000001 Rmu_co8096640.1_g000001 Rmu_co8214930.1_g000001 Rmu_co8223272.1_g000001 Rmu_co8282535.1_g000001 Rmu_co8343567.1_g000001 Rmu_co8404191.1_g000001 Rmu_co8455157.1_g000001 Rmu_sc0000062.1_g000028 Rmu_sc0000082.1_g000091 Rmu_sc0000509.1_g000017 Rmu_sc0000775.1_g000001 Rmu_sc0000999.1_g000034 Rmu_sc0001559.1_g000004 Rmu_sc0001559.1_g000009 Rmu_sc0002164.1_g000001 Rmu_sc0002164.1_g000005 Rmu_sc0002164.1_g000007 Rmu_sc0002164.1_g000008 Rmu_sc0002164.1_g000009 Rmu_sc0002164.1_g000019 Rmu_sc0002247.1_g000009 Rmu_sc0002373.1_g000002 Rmu_sc0002373.1_g000003 Rmu_sc0002944.1_g000059 Rmu_sc0003930.1_g000004 Rmu_sc0004958.1_g000001 Rmu_sc0005197.1_g000014 Rmu_sc0005898.1_g000008 Rmu_sc0005898.1_g000009 Rmu_sc0005898.1_g000015 Rmu_sc0006059.1_g000004 Rmu_sc0006059.1_g000010 Rmu_sc0006903.1_g000007 Rmu_sc0006903.1_g000008 Rmu_sc0006968.1_g000001 Rmu_sc0011009.1_g000009 Rmu_sc0022852.1_g000002 Rmu_sc0033854.1_g000001 Rmu_ssc0000421.1_g000057 Rmu_ssc0000421.1_g000067 Rmu_ssc0000421.1_g000069 Rmu_ssc0000421.1_g000072 Rmu_ssc0000421.1_g000081 Rmu_ssc0000421.1_g000086
rosa_roxburghii Rroxscaffold_158G00443680 Rroxscaffold_158G00443710 Rroxscaffold_158G00443720 Rroxscaffold_158G00443740 Rroxscaffold_1G00034950 Rroxscaffold_1G00044240 Rroxscaffold_1G00044270 Rroxscaffold_3G00241380 Rroxscaffold_3G00247000 Rroxscaffold_3G00263120 Rroxscaffold_3G00263150 Rroxscaffold_3G00263160 Rroxscaffold_3G00263170 Rroxscaffold_3G00263180 Rroxscaffold_3G00263190 Rroxscaffold_3G00263210 Rroxscaffold_3G00263230 Rroxscaffold_3G00263260 Rroxscaffold_3G00264110 Rroxscaffold_3G00264130 Rroxscaffold_3G00264160 Rroxscaffold_3G00264180 Rroxscaffold_3G00264200 Rroxscaffold_4G00288750 Rroxscaffold_4G00303110 Rroxscaffold_4G00303120 Rroxscaffold_4G00322280 Rroxscaffold_5G00356200 Rroxscaffold_6G00399150 Rroxscaffold_6G00399290 Rroxscaffold_7G00194770
rosa_rugosa Rorug01G0225300 Rorug01G0225400 Rorug01G0225800 Rorug01G0226000 Rorug01G0339400 Rorug01G0451500 Rorug03G0196900 Rorug03G0294900 Rorug04G0107500 Rorug04G0107600 Rorug04G0129700 Rorug04G0178000 Rorug05G0144900.1 Rorug05G0145000 Rorug05G0228000 Rorug05G0228600 Rorug06G0078300 Rorug06G0508000 Rorug06G0508100 Rorug06G0508100 Rorug06G0508400 Rorug06G0513400 Rorug07G0000100 Rorug07G0000200 Rorug07G0000300 Rorug07G0000500 Rorug07G0000800
rosa_samantha Rh1BG060400 Rh1BG210300 Rh1BG210700 Rh1BG210800 Rh1BG309800 Rh1CG223800 Rh1CG224200 Rh1CG325200 Rh1DG237000 Rh1DG237400 Rh1DG341600 Rh2DG365700 Rh3AG212500 Rh3AG248400 Rh3CG239800 Rh3DG239300 Rh4AG169300 Rh4BG166200 Rh4BG240500 Rh4BG240600 Rh4DG163600 Rh5AG249600 Rh5AG249900 Rh5AG250000 Rh5CG283100 Rh5CG283200 Rh5CG283400 Rh5DG259200 Rh5DG259800 Rh6BG197700 Rh6CG197800 Rh6DG189400 Rh7AG114900 Rh7AG115000 Rh7AG115200 Rh7AG115300 Rh7AG115400 Rh7AG115500 Rh7AG123900 Rh7AG124100 Rh7AG124300 Rh7BG117200 Rh7BG117400 Rh7BG118400 Rh7BG125400 Rh7BG125600 Rh7BG125700 Rh7BG125800 Rh7BG125900 Rh7BG126000 Rh7BG126400 Rh7BG126600 Rh7BG126700 Rh7BG166200 Rh7DG118600 Rh7DG118700 Rh7DG118900 Rh7DG119000 Rh7DG119100 Rh7DG127400 Rh7DG127600 Rh7DG127700 Rh7DG127900 Rh7DG128200
rosa_wichuraiana Rw1G013270 Rw1G020790 Rw2G027890 Rw2G028040 Rw3G019240 Rw4G014070 Rw4G020540 Rw5G021320 Rw5G022970 Rw6G016920 Rw7G010020 Rw7G010040 Rw7G010580 Rw7G010590 Rw7G010600 Rw7G010610 Rw7G010620 Rw7G010630 Rw7G010640 Rw7G010690

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 46
AcoI YGGCCR 1 cut(s) 93
AfaI GTAC 1 cut(s) 147
AfiI CCNNNNNNNGG 1 cut(s) 176
AgsI TTSAA 3 cut(s) 76, 221, 319
AjuI GAANNNNNNNTTGG 2 cut(s) 344, 376
AluBI AGCT 1 cut(s) 296
AluI AGCT 1 cut(s) 296
AlwI GGATC 1 cut(s) 46
AoxI GGCC 3 cut(s) 93, 242, 272
ApeKI GCWGC 2 cut(s) 253, 302
AspS9I GGNCC 2 cut(s) 123, 242
AvaII GGWCC 1 cut(s) 123
BbvCI CCTCAGC 1 cut(s) 297
BbvI GCAGC 2 cut(s) 240, 289
BccI CCATC 2 cut(s) 114, 179
BglII AGATCT 1 cut(s) 312
BisI GCNGC 2 cut(s) 254, 303
BlsI GCNGC 2 cut(s) 255, 304
Bme18I GGWCC 1 cut(s) 123
BmgT120I GGNCC 2 cut(s) 123, 242
Bpu10I CCTNAGC 1 cut(s) 297
BsaJI CCNNGG 1 cut(s) 238
Bsc4I CCNNNNNNNGG 1 cut(s) 176
Bse1I ACTGG 1 cut(s) 275
BseDI CCNNGG 1 cut(s) 238
BseLI CCNNNNNNNGG 1 cut(s) 176
BseMII CTCAG 1 cut(s) 288
BseNI ACTGG 1 cut(s) 275
BseXI GCAGC 2 cut(s) 240, 289
BshFI GGCC 3 cut(s) 95, 244, 274
BslI CCNNNNNNNGG 1 cut(s) 176
BsnI GGCC 3 cut(s) 95, 244, 274
Bsp143I GATC 2 cut(s) 51, 312
Bsp19I CCATGG 1 cut(s) 238
BspANI GGCC 3 cut(s) 95, 244, 274
BspCNI CTCAG 1 cut(s) 289
BspPI GGATC 1 cut(s) 46
BsrI ACTGG 1 cut(s) 275
BssECI CCNNGG 1 cut(s) 238
BssMI GATC 2 cut(s) 51, 312
BssT1I CCWWGG 1 cut(s) 238
BstC8I GCNNGC 1 cut(s) 272
BstDEI CTNAG 1 cut(s) 297
BstDSI CCRYGG 1 cut(s) 238
BstKTI GATC 2 cut(s) 54, 315
BstMBI GATC 2 cut(s) 51, 312
BstMWI GCNNNNNNNGC 2 cut(s) 250, 302
BstV1I GCAGC 2 cut(s) 240, 289
BstX2I RGATCY 1 cut(s) 312
BstYI RGATCY 1 cut(s) 312
BsuRI GGCC 3 cut(s) 95, 244, 274
BtgI CCRYGG 1 cut(s) 238
BtgZI GCGATG 1 cut(s) 194
Cac8I GCNNGC 1 cut(s) 272
Cfr13I GGNCC 2 cut(s) 123, 242
Csp6I GTAC 1 cut(s) 146
CviAII CATG 3 cut(s) 239, 250, 326
CviJI RGCY 5 cut(s) 95, 244, 274, 296, 302
CviKI_1 RGCY 5 cut(s) 95, 244, 274, 296, 302
CviQI GTAC 1 cut(s) 146
DdeI CTNAG 1 cut(s) 297
DpnI GATC 2 cut(s) 53, 314
DpnII GATC 2 cut(s) 51, 312
EaeI YGGCCR 1 cut(s) 93
Eco130I CCWWGG 1 cut(s) 238
Eco47I GGWCC 1 cut(s) 123
EcoT14I CCWWGG 1 cut(s) 238
ErhI CCWWGG 1 cut(s) 238
FaeI CATG 3 cut(s) 242, 253, 329
FaiI YATR 5 cut(s) 115, 132, 240, 251, 327
FalI AAGNNNNNCTT 2 cut(s) 344, 376
FatI CATG 3 cut(s) 238, 249, 325
Fnu4HI GCNGC 2 cut(s) 254, 303
Fsp4HI GCNGC 2 cut(s) 254, 303
GluI GCNGC 2 cut(s) 254, 303
HaeIII GGCC 3 cut(s) 95, 244, 274
Hin1II CATG 3 cut(s) 242, 253, 329
HinfI GANTC 1 cut(s) 62
Hpy188I TCNGA 2 cut(s) 266, 343
Hpy188III TCNNGA 1 cut(s) 49
HpyAV CCTTC 2 cut(s) 82, 162
HpyCH4V TGCA 1 cut(s) 16
HpyF10VI GCNNNNNNNGC 2 cut(s) 250, 302
HpyF3I CTNAG 1 cut(s) 297
Hsp92II CATG 3 cut(s) 242, 253, 329
Kzo9I GATC 2 cut(s) 51, 312
LmnI GCTCC 2 cut(s) 207, 261
LpnPI CCDG 6 cut(s) 8, 26, 256, 258, 288, 323
Lsp1109I GCAGC 2 cut(s) 240, 289
MalI GATC 2 cut(s) 53, 314
MboI GATC 2 cut(s) 51, 312
MboII GAAGA 4 cut(s) 37, 176, 307, 352
MflI RGATCY 1 cut(s) 312
MluCI AATT 1 cut(s) 41
MmeI TCCRAC 1 cut(s) 366
MnlI CCTC 5 cut(s) 113, 136, 216, 292, 363
MseI TTAA 1 cut(s) 332
MspA1I CMGCKG 1 cut(s) 296
MwoI GCNNNNNNNGC 2 cut(s) 250, 302
NcoI CCATGG 1 cut(s) 238
NdeII GATC 2 cut(s) 51, 312
NlaIII CATG 3 cut(s) 242, 253, 329
PfeI GAWTC 1 cut(s) 62
PkrI GCNGC 2 cut(s) 255, 304
PspPI GGNCC 2 cut(s) 123, 242
PsuI RGATCY 1 cut(s) 312
PvuII CAGCTG 1 cut(s) 296
RsaI GTAC 1 cut(s) 147
RsaNI GTAC 1 cut(s) 146
SaqAI TTAA 1 cut(s) 332
SatI GCNGC 2 cut(s) 254, 303
Sau3AI GATC 2 cut(s) 51, 312
Sau96I GGNCC 2 cut(s) 123, 242
SetI ASST 4 cut(s) 154, 227, 298, 374
SinI GGWCC 1 cut(s) 123
Sse9I AATT 1 cut(s) 41
SspI AATATT 2 cut(s) 80, 336
StyI CCWWGG 1 cut(s) 238
TasI AATT 1 cut(s) 41
TfiI GAWTC 1 cut(s) 62
Tru1I TTAA 1 cut(s) 332
Tru9I TTAA 1 cut(s) 332
TseI GCWGC 2 cut(s) 253, 302
TspDTI ATGAA 2 cut(s) 176, 346
VpaK11BI GGWCC 1 cut(s) 123
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.