Rroxscaffold_3G00264180

Cytochrome p450

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
Physical Location & Seq
Reverse (-)
57928185 .. 57928472
288 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00264180.1

Sequence Viewer

Length: 288 bp
ATGGCGGAGCTCATCAACAATGAAACTCTTTCACTTGTACTCGTCGCCGTTTTCCTCATCCTCTTGTACAAGTGGTCTTCTTCCACTTCCAGTGGTACCAAAAACTCACCACCTTCTCCACCAAAACTCCCCATCATCGGAAACCTTCACCAACAAGGCCCTCGAGGAACTCCACCCCATCGCGCACTTCAAGCCTTATCTCGAGTACATGGTCCTCTCATGCTCCTCCATTTCGGAAGCGTCCCCATCCTCGTCGTCTCGTCGGCCGAGGCTGCCCGGAGATCATGA

Protein Analysis

95

Amino Acids

10.17

Weight (kDa)

10.95

Isoelectric Point (pI)

55.47

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 37 - 93 6.3e-07 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000061)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G48270 AT3G48280 AT3G48290 AT3G48290 AT3G48300 AT3G48300 AT3G48310 AT3G48320 AT4G20235 AT4G20235
fragaria_vesca FvH4_2g12910 FvH4_2g12910 FvH4_2g12910 FvH4_2g12910 FvH4_2g12910 FvH4_2g36190 FvH4_3g14160 FvH4_3g14210 FvH4_3g14260 FvH4_3g14260 FvH4_3g21100 FvH4_3g21380 FvH4_4g24460 FvH4_4g24500 FvH4_5g06571 FvH4_5g06571 FvH4_5g06571 FvH4_5g06571 FvH4_5g06572 FvH4_5g06573 FvH4_5g06574 FvH4_5g06575 FvH4_5g06576 FvH4_5g06577 FvH4_5g06577 FvH4_5g07540 FvH4_5g07550 FvH4_5g07560 FvH4_5g07570 FvH4_5g29491 FvH4_5g29492 FvH4_6g23870 FvH4_6g23880 FvH4_6g26870 FvH4_7g11861 FvH4_7g11862 FvH4_7g13050 FvH4_7g13060 FvH4_7g13080 FvH4_7g13080 FvH4_7g22630 FvH4_7g22650 FvH4_7g22651 FvH4_7g23020
malus_domestica MD03G1207400.v1.1 MD03G1214800.v1.1 MD03G1218500.v1.1 MD06G1163100.v1.1 MD06G1163300.v1.1 MD06G1163400.v1.1 MD06G1163500.v1.1 MD06G1163600.v1.1 MD06G1163800.v1.1 MD06G1164000.v1.1 MD06G1164100.v1.1 MD06G1224400.v1.1 MD08G1222800.v1.1 MD08G1222900.v1.1 MD08G1223100.v1.1 MD11G1091500.v1.1 MD11G1091800.v1.1 MD14G1163200.v1.1 MD14G1169000.v1.1 MD15G1207200.v1.1 MD15G1207300.v1.1 MD17G1259400.v1.1
prunus_persica Prupe.4G198100_v2.0.a1 Prupe.4G199100_v2.0.a1 Prupe.4G199400_v2.0.a1 Prupe.4G199800_v2.0.a1 Prupe.4G225200_v2.0.a1 Prupe.4G239100_v2.0.a1 Prupe.5G156600_v2.0.a1 Prupe.5G163500_v2.0.a1 Prupe.7G209500_v2.0.a1 Prupe.I003400_v2.0.a1
pyrus_communis pycom03g16340 pycom06g14600 pycom06g14610 pycom06g14620 pycom06g14630 pycom06g14640 pycom06g14670 pycom06g14690 pycom08g19390 pycom08g19400 pycom08g19410 pycom11g07600 pycom11g07610 pycom11g07620 pycom11g07660 pycom14g13580 pycom14g14080 pycom14g14100 pycom14g14110 pycom15g18380 pycom17g26080
rosa_chinensis RchiOBHm_Chr1g0339441 RchiOBHm_Chr1g0339451 RchiOBHm_Chr1g0352191 RchiOBHm_Chr1g0368221 RchiOBHm_Chr2g0129531 RchiOBHm_Chr2g0129541 RchiOBHm_Chr3g0477631 RchiOBHm_Chr3g0482551 RchiOBHm_Chr3g0482561 RchiOBHm_Chr3g0482571 RchiOBHm_Chr4g0411601 RchiOBHm_Chr4g0422181 RchiOBHm_Chr5g0036661 RchiOBHm_Chr5g0036731 RchiOBHm_Chr6g0274021 RchiOBHm_Chr7g0190921 RchiOBHm_Chr7g0190931 RchiOBHm_Chr7g0190941 RchiOBHm_Chr7g0190951 RchiOBHm_Chr7g0190961 RchiOBHm_Chr7g0190971 RchiOBHm_Chr7g0191001 RchiOBHm_Chr7g0191011 RchiOBHm_Chr7g0191021 RchiOBHm_Chr7g0192181 RchiOBHm_Chr7g0192191 RchiOBHm_Chr7g0192201 RchiOBHm_Chr7g0192221 RchiOBHm_Chr7g0192231 RchiOBHm_Chr7g0192281 RchiOBHm_Chr7g0197311
rosa_laevigata RLG00000003942 RLG00000004345 RLG00000004379 RLG00000004383 RLG00000004384 RLG00000004385 RLG00000004387 RLG00000004388 RLG00000004389 RLG00000004480 RLG00000004481 RLG00000004482 RLG00000004483 RLG00000004485 RLG00000008342 RLG00000008401 RLG00000013583 RLG00000017044 RLG00000027229 RLG00000028349 RLG00000028350 RLG00000028353 RLG00000028820 RLG00000033707 RLG00000033710
rosa_multiflora Rmu_co8020340.1_g000001 Rmu_co8096640.1_g000001 Rmu_co8214930.1_g000001 Rmu_co8223272.1_g000001 Rmu_co8282535.1_g000001 Rmu_co8343567.1_g000001 Rmu_co8404191.1_g000001 Rmu_co8455157.1_g000001 Rmu_sc0000062.1_g000028 Rmu_sc0000082.1_g000091 Rmu_sc0000509.1_g000017 Rmu_sc0000775.1_g000001 Rmu_sc0000999.1_g000034 Rmu_sc0001559.1_g000004 Rmu_sc0001559.1_g000009 Rmu_sc0002164.1_g000001 Rmu_sc0002164.1_g000005 Rmu_sc0002164.1_g000007 Rmu_sc0002164.1_g000008 Rmu_sc0002164.1_g000009 Rmu_sc0002164.1_g000019 Rmu_sc0002247.1_g000009 Rmu_sc0002373.1_g000002 Rmu_sc0002373.1_g000003 Rmu_sc0002944.1_g000059 Rmu_sc0003930.1_g000004 Rmu_sc0004958.1_g000001 Rmu_sc0005197.1_g000014 Rmu_sc0005898.1_g000008 Rmu_sc0005898.1_g000009 Rmu_sc0005898.1_g000015 Rmu_sc0006059.1_g000004 Rmu_sc0006059.1_g000010 Rmu_sc0006903.1_g000007 Rmu_sc0006903.1_g000008 Rmu_sc0006968.1_g000001 Rmu_sc0011009.1_g000009 Rmu_sc0022852.1_g000002 Rmu_sc0033854.1_g000001 Rmu_ssc0000421.1_g000057 Rmu_ssc0000421.1_g000067 Rmu_ssc0000421.1_g000069 Rmu_ssc0000421.1_g000072 Rmu_ssc0000421.1_g000081 Rmu_ssc0000421.1_g000086
rosa_roxburghii Rroxscaffold_158G00443680 Rroxscaffold_158G00443710 Rroxscaffold_158G00443720 Rroxscaffold_158G00443740 Rroxscaffold_1G00034950 Rroxscaffold_1G00044240 Rroxscaffold_1G00044270 Rroxscaffold_3G00241380 Rroxscaffold_3G00247000 Rroxscaffold_3G00263120 Rroxscaffold_3G00263150 Rroxscaffold_3G00263160 Rroxscaffold_3G00263170 Rroxscaffold_3G00263180 Rroxscaffold_3G00263190 Rroxscaffold_3G00263210 Rroxscaffold_3G00263230 Rroxscaffold_3G00263260 Rroxscaffold_3G00264110 Rroxscaffold_3G00264130 Rroxscaffold_3G00264160 Rroxscaffold_3G00264180 Rroxscaffold_3G00264200 Rroxscaffold_4G00288750 Rroxscaffold_4G00303110 Rroxscaffold_4G00303120 Rroxscaffold_4G00322280 Rroxscaffold_5G00356200 Rroxscaffold_6G00399150 Rroxscaffold_6G00399290 Rroxscaffold_7G00194770
rosa_rugosa Rorug01G0225300 Rorug01G0225400 Rorug01G0225800 Rorug01G0226000 Rorug01G0339400 Rorug01G0451500 Rorug03G0196900 Rorug03G0294900 Rorug04G0107500 Rorug04G0107600 Rorug04G0129700 Rorug04G0178000 Rorug05G0144900.1 Rorug05G0145000 Rorug05G0228000 Rorug05G0228600 Rorug06G0078300 Rorug06G0508000 Rorug06G0508100 Rorug06G0508100 Rorug06G0508400 Rorug06G0513400 Rorug07G0000100 Rorug07G0000200 Rorug07G0000300 Rorug07G0000500 Rorug07G0000800
rosa_samantha Rh1BG060400 Rh1BG210300 Rh1BG210700 Rh1BG210800 Rh1BG309800 Rh1CG223800 Rh1CG224200 Rh1CG325200 Rh1DG237000 Rh1DG237400 Rh1DG341600 Rh2DG365700 Rh3AG212500 Rh3AG248400 Rh3CG239800 Rh3DG239300 Rh4AG169300 Rh4BG166200 Rh4BG240500 Rh4BG240600 Rh4DG163600 Rh5AG249600 Rh5AG249900 Rh5AG250000 Rh5CG283100 Rh5CG283200 Rh5CG283400 Rh5DG259200 Rh5DG259800 Rh6BG197700 Rh6CG197800 Rh6DG189400 Rh7AG114900 Rh7AG115000 Rh7AG115200 Rh7AG115300 Rh7AG115400 Rh7AG115500 Rh7AG123900 Rh7AG124100 Rh7AG124300 Rh7BG117200 Rh7BG117400 Rh7BG118400 Rh7BG125400 Rh7BG125600 Rh7BG125700 Rh7BG125800 Rh7BG125900 Rh7BG126000 Rh7BG126400 Rh7BG126600 Rh7BG126700 Rh7BG166200 Rh7DG118600 Rh7DG118700 Rh7DG118900 Rh7DG119000 Rh7DG119100 Rh7DG127400 Rh7DG127600 Rh7DG127700 Rh7DG127900 Rh7DG128200
rosa_wichuraiana Rw1G013270 Rw1G020790 Rw2G027890 Rw2G028040 Rw3G019240 Rw4G014070 Rw4G020540 Rw5G021320 Rw5G022970 Rw6G016920 Rw7G010020 Rw7G010040 Rw7G010580 Rw7G010590 Rw7G010600 Rw7G010610 Rw7G010620 Rw7G010630 Rw7G010640 Rw7G010690

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AbsI CCTCGAGG 1 cut(s) 162
Acc65I GGTACC 1 cut(s) 95
AccB1I GGYRCC 1 cut(s) 95
AccII CGCG 1 cut(s) 183
AciI CCGC 1 cut(s) 5
AcoI YGGCCR 1 cut(s) 264
AfaI GTAC 4 cut(s) 39, 68, 97, 207
AfiI CCNNNNNNNGG 1 cut(s) 137
AgsI TTSAA 1 cut(s) 191
AluBI AGCT 1 cut(s) 10
AluI AGCT 1 cut(s) 10
Alw21I GWGCWC 1 cut(s) 12
Alw26I GTCTC 1 cut(s) 262
Ama87I CYCGRG 2 cut(s) 162, 201
AoxI GGCC 2 cut(s) 157, 264
ApeKI GCWGC 1 cut(s) 272
Asp718I GGTACC 1 cut(s) 95
AspLEI GCGC 1 cut(s) 185
AspS9I GGNCC 2 cut(s) 158, 212
AsuC2I CCSGG 1 cut(s) 277
AsuHPI GGTGA 2 cut(s) 99, 140
AvaI CYCGRG 2 cut(s) 162, 201
AvaII GGWCC 1 cut(s) 212
BanI GGYRCC 1 cut(s) 95
BanII GRGCYC 1 cut(s) 12
BbsI GAAGAC 1 cut(s) 69
Bbv12I GWGCWC 1 cut(s) 12
BbvI GCAGC 1 cut(s) 259
BccI CCATC 3 cut(s) 140, 186, 254
BceAI ACGGC 1 cut(s) 32
BcnI CCSGG 1 cut(s) 277
BcoDI GTCTC 1 cut(s) 262
BisI GCNGC 1 cut(s) 273
BlsI GCNGC 1 cut(s) 274
Bme1390I CCNGG 1 cut(s) 277
Bme18I GGWCC 1 cut(s) 212
BmeT110I CYCGRG 2 cut(s) 162, 201
BmgT120I GGNCC 2 cut(s) 158, 212
BmiI GGNNCC 1 cut(s) 97
BmrFI CCNGG 1 cut(s) 277
BpiI GAAGAC 1 cut(s) 69
BpuMI CCSGG 1 cut(s) 277
BsaJI CCNNGG 1 cut(s) 267
BsaXI ACNNNNNCTCC 2 cut(s) 111, 141
Bsc4I CCNNNNNNNGG 1 cut(s) 137
Bse1I ACTGG 1 cut(s) 90
BseDI CCNNGG 1 cut(s) 267
BseGI GGATG 2 cut(s) 57, 246
BseLI CCNNNNNNNGG 1 cut(s) 137
BseNI ACTGG 1 cut(s) 90
BseRI GAGGAG 1 cut(s) 215
BseX3I CGGCCG 1 cut(s) 264
BseXI GCAGC 1 cut(s) 259
Bsh1236I CGCG 1 cut(s) 183
Bsh1285I CGRYCG 1 cut(s) 267
BshFI GGCC 2 cut(s) 159, 266
BshNI GGYRCC 1 cut(s) 95
BsiEI CGRYCG 1 cut(s) 267
BsiHKAI GWGCWC 1 cut(s) 12
BsiHKCI CYCGRG 2 cut(s) 162, 201
BsiSI CCGG 1 cut(s) 277
BslFI GGGAC 1 cut(s) 227
BslI CCNNNNNNNGG 1 cut(s) 137
BsmAI GTCTC 1 cut(s) 262
BsmBI CGTCTC 1 cut(s) 262
BsmFI GGGAC 1 cut(s) 227
BsnI GGCC 2 cut(s) 159, 266
BsoBI CYCGRG 2 cut(s) 162, 201
Bsp1286I GDGCHC 1 cut(s) 12
Bsp1407I TGTACA 1 cut(s) 66
Bsp143I GATC 1 cut(s) 281
BspACI CCGC 1 cut(s) 5
BspANI GGCC 2 cut(s) 159, 266
BspFNI CGCG 1 cut(s) 183
BspHI TCATGA 1 cut(s) 284
BspLI GGNNCC 1 cut(s) 97
BspT107I GGYRCC 1 cut(s) 95
BsrGI TGTACA 1 cut(s) 66
BsrI ACTGG 1 cut(s) 90
BssECI CCNNGG 1 cut(s) 267
BssMI GATC 1 cut(s) 281
BstAUI TGTACA 1 cut(s) 66
BstF5I GGATG 2 cut(s) 57, 246
BstFNI CGCG 1 cut(s) 183
BstHHI GCGC 1 cut(s) 185
BstKTI GATC 1 cut(s) 284
BstMAI GTCTC 1 cut(s) 262
BstMBI GATC 1 cut(s) 281
BstMCI CGRYCG 1 cut(s) 267
BstMWI GCNNNNNNNGC 2 cut(s) 191, 272
BstSCI CCNGG 1 cut(s) 275
BstUI CGCG 1 cut(s) 183
BstV1I GCAGC 1 cut(s) 259
BstV2I GAAGAC 1 cut(s) 69
BstZI CGGCCG 1 cut(s) 264
BsuRI GGCC 2 cut(s) 159, 266
BtgZI GCGATG 1 cut(s) 164
BtsCI GGATG 2 cut(s) 57, 246
BtsIMutI CAGTG 1 cut(s) 97
CciI TCATGA 1 cut(s) 284
CfoI GCGC 1 cut(s) 185
Cfr13I GGNCC 2 cut(s) 158, 212
CseI GACGC 1 cut(s) 229
Csp6I GTAC 4 cut(s) 38, 67, 96, 206
CviAII CATG 3 cut(s) 209, 220, 285
CviJI RGCY 5 cut(s) 10, 159, 194, 266, 272
CviKI_1 RGCY 5 cut(s) 10, 159, 194, 266, 272
CviQI GTAC 4 cut(s) 38, 67, 96, 206
DpnI GATC 1 cut(s) 283
DpnII GATC 1 cut(s) 281
EaeI YGGCCR 1 cut(s) 264
EagI CGGCCG 1 cut(s) 264
EciI GGCGGA 1 cut(s) 20
Ecl136II GAGCTC 1 cut(s) 10
EclXI CGGCCG 1 cut(s) 264
Eco24I GRGCYC 1 cut(s) 12
Eco47I GGWCC 1 cut(s) 212
Eco52I CGGCCG 1 cut(s) 264
Eco53kI GAGCTC 1 cut(s) 10
Eco88I CYCGRG 2 cut(s) 162, 201
EcoICRI GAGCTC 1 cut(s) 10
EcoO109I RGGNCCY 1 cut(s) 158
EcoT38I GRGCYC 1 cut(s) 12
Esp3I CGTCTC 1 cut(s) 262
FaeI CATG 3 cut(s) 212, 223, 288
FaiI YATR 3 cut(s) 210, 221, 286
FaqI GGGAC 1 cut(s) 227
FatI CATG 3 cut(s) 208, 219, 284
Fnu4HI GCNGC 1 cut(s) 273
FokI GGATG 2 cut(s) 44, 233
FriOI GRGCYC 1 cut(s) 12
Fsp4HI GCNGC 1 cut(s) 273
GlaI GCGC 1 cut(s) 184
GluI GCNGC 1 cut(s) 273
HaeIII GGCC 2 cut(s) 159, 266
HapII CCGG 1 cut(s) 277
HgaI GACGC 1 cut(s) 229
HhaI GCGC 1 cut(s) 185
Hin1II CATG 3 cut(s) 212, 223, 288
Hin6I GCGC 1 cut(s) 183
HinP1I GCGC 1 cut(s) 183
HpaII CCGG 1 cut(s) 277
HphI GGTGA 2 cut(s) 99, 140
Hpy188I TCNGA 2 cut(s) 140, 236
Hpy188III TCNNGA 2 cut(s) 201, 285
Hpy99I CGWCG 3 cut(s) 47, 257, 265
HpyAV CCTTC 2 cut(s) 123, 155
HpyF10VI GCNNNNNNNGC 2 cut(s) 191, 272
Hsp92II CATG 3 cut(s) 212, 223, 288
HspAI GCGC 1 cut(s) 183
KpnI GGTACC 1 cut(s) 99
Kzo9I GATC 1 cut(s) 281
LmnI GCTCC 2 cut(s) 7, 228
LpnPI CCDG 1 cut(s) 103
Lsp1109I GCAGC 1 cut(s) 259
MalI GATC 1 cut(s) 283
MboI GATC 1 cut(s) 281
MboII GAAGA 2 cut(s) 69, 72
MhlI GDGCHC 1 cut(s) 12
MnlI CCTC 8 cut(s) 65, 71, 158, 171, 225, 236, 260, 262
MspI CCGG 1 cut(s) 277
MspR9I CCNGG 1 cut(s) 277
MvnI CGCG 1 cut(s) 183
MwoI GCNNNNNNNGC 2 cut(s) 191, 272
NciI CCSGG 1 cut(s) 277
NdeII GATC 1 cut(s) 281
NlaIII CATG 3 cut(s) 212, 223, 288
NlaIV GGNNCC 1 cut(s) 97
PaeR7I CTCGAG 2 cut(s) 162, 201
PagI TCATGA 1 cut(s) 284
PkrI GCNGC 1 cut(s) 274
Psp124BI GAGCTC 1 cut(s) 12
PspN4I GGNNCC 1 cut(s) 97
PspPI GGNCC 2 cut(s) 158, 212
PspXI VCTCGAGB 1 cut(s) 162
RsaI GTAC 4 cut(s) 39, 68, 97, 207
RsaNI GTAC 4 cut(s) 38, 67, 96, 206
SacI GAGCTC 1 cut(s) 12
SatI GCNGC 1 cut(s) 273
Sau3AI GATC 1 cut(s) 281
Sau96I GGNCC 2 cut(s) 158, 212
ScrFI CCNGG 1 cut(s) 277
SduI GDGCHC 1 cut(s) 12
SetI ASST 3 cut(s) 12, 115, 147
Sfr274I CTCGAG 2 cut(s) 162, 201
SinI GGWCC 1 cut(s) 212
SlaI CTCGAG 2 cut(s) 162, 201
SmlI CTYRAG 2 cut(s) 162, 201
SmoI CTYRAG 2 cut(s) 162, 201
SsiI CCGC 1 cut(s) 5
SstI GAGCTC 1 cut(s) 12
StyD4I CCNGG 1 cut(s) 275
TaqI TCGA 2 cut(s) 163, 202
TatI WGTACW 3 cut(s) 37, 66, 205
TscAI CASTG 1 cut(s) 97
TseI GCWGC 1 cut(s) 272
TspDTI ATGAA 1 cut(s) 36
TspRI CASTG 1 cut(s) 97
VpaK11BI GGWCC 1 cut(s) 212
XhoI CTCGAG 2 cut(s) 162, 201
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.