FvH4_6g02550

F-box FBD LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0000467
Physical Location & Seq
Forward (+)
1478343 .. 1479811
1469 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g02550.t1

Sequence Viewer

Length: 840 bp
ATGTTCTTCGTCTCAAACCTGTCCCTCTTGGCTAGCGGCCTTTATCCTTTTCCTTCTGCCAAAACTTGTACATATGTTCCCTCTGCGGCTCTTTTGAGCTCAAATCAAAACGGGGTTTGCCCGTTAGTATTGCACCGGGTGATGCAACAAGAGTCTGAACACCTTTTGGGTGCTTGTCTCTTTGATCTATTCGTGGATCTCACCTACCTTTCAATTCAACTAGTTTATCTGGTTGTATTATTGGCAGAAGATGATCTCCAATTCGGAGATGGTTTGAGTCATGTGCTCTTTGAATTTGCTTCTGGAGATTTATGTTTTGGGTTCTATCTGTTTGGAATGGTCATCGGAGCCTCTAATGGTCACTGGATTGGGTCGAAACGTGTTGCCGGCGGATGTTGTATTCTTCTTGGCTGCGCGCTGCTCTTCCTTGGTTCTTGTTCATTGTTGCGTTCTCCTTTGGCTGATCAAAAAAGTGGGCTTGCCTGGTTGAAGTCTGCTGTGTCTCATAGGTGTTGGTTTCCTTGGACCTTTTTAAGGTCTTTGTTTGTTCTTTATGTTTCCTTTGGGATCTTCCTCATGGGTATAACATACCTATTGAGAAGCGCTTCTATAGTCAACAACCTCAACGTTCGTTTTACCATGTACTCTTGTGAAGGAAGTGATAGGTGGAAAGACATGGATGACGCCAACTGCACTGAAGAGCAATTCTGGGAGACTCAAGCTCAATATTTGTGCCAATTTCTTAGTCACCTAGAGGTGGTCGACATCAATCTTGACATAGTCCCTGAGACTGCAATCACTTCTGCAAAATTTCTTCTTAAATACGGTAGAGGCCTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBD

Protein Analysis

280

Amino Acids

31.06

Weight (kDa)

5.28

Isoelectric Point (pI)

38.94

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000467)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g02550 FvH4_6g26921 FvH4_6g45630
malus_domestica MD01G1113200.v1.1 MD09G1101600.v1.1 MD17G1084600.v1.1
prunus_persica Prupe.3G224400_v2.0.a1 Prupe.3G224500_v2.0.a1 Prupe.3G224600_v2.0.a1
pyrus_communis pycom02g19930 pycom09g00760 pycom09g00770 pycom17g08170
rosa_chinensis RchiOBHm_Chr1g0350511 RchiOBHm_Chr2g0086171 RchiOBHm_Chr2g0117831 RchiOBHm_Chr3g0450391 RchiOBHm_Chr4g0409631 RchiOBHm_Chr5g0039731
rosa_laevigata RLG00000008538 RLG00000018375 RLG00000021415 RLG00000028481 RLG00000033926 RLG00000033937 RLG00000033938 RLG00000033939 RLG00000033941
rosa_multiflora Rmu_sc0000103.1_g000011 Rmu_sc0000330.1_g000009 Rmu_sc0000652.1_g000002 Rmu_sc0001507.1_g000017 Rmu_sc0004020.1_g000010 Rmu_sc0026676.1_g000001 Rmu_ssc0000083.1_g000022 Rmu_ssc0000400.1_g000021
rosa_roxburghii Rroxscaffold_1G00040760 Rroxscaffold_1G00041490 Rroxscaffold_1G00041500 Rroxscaffold_1G00041630 Rroxscaffold_2G00087990 Rroxscaffold_2G00126200 Rroxscaffold_4G00304800 Rroxscaffold_5G00354160 Rroxscaffold_5G00354170
rosa_rugosa Rorug01G0211500 Rorug02G0214300 Rorug02G0496800 Rorug02G0627700 Rorug04G0095600 Rorug05G0181700
rosa_samantha Rh1AG226300 Rh1BG194700 Rh1CG211100 Rh1DG222900 Rh2AG270500 Rh2AG270600 Rh2AG562900 Rh2AG563000 Rh2BG281900 Rh2BG282000 Rh2BG575700 Rh2CG269300 Rh2CG269400 Rh2DG278300 Rh2DG296200 Rh2DG585900 Rh3AG028000 Rh3AG028100 Rh3BG028500 Rh3BG028600 Rh3CG027300 Rh3CG027400 Rh3DG028400 Rh3DG028500 Rh4BG156800 Rh4CG167300 Rh4CG167400 Rh4DG151100 Rh5AG268000 Rh5BG272400 Rh5BG272500 Rh5CG304000 Rh5CG305000 Rh5CG305100 Rh5DG280500
rosa_wichuraiana Rw1G019530 Rw2G021370 Rw4G012860 Rw4G012970 Rw5G025070

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 762
AccII CGCG 1 cut(s) 416
AciI CCGC 3 cut(s) 36, 86, 390
AclI AACGTT 1 cut(s) 627
AclWI GGATC 2 cut(s) 204, 575
AcsI RAATTY 2 cut(s) 293, 809
AcuI CTGAAG 1 cut(s) 717
AcyI GRCGYC 1 cut(s) 684
AdeI CACNNNGTG 1 cut(s) 139
AfaI GTAC 2 cut(s) 70, 644
AfeI AGCGCT 1 cut(s) 604
AfiI CCNNNNNNNGG 2 cut(s) 534, 757
AflIII ACRYGT 1 cut(s) 379
AgsI TTSAA 4 cut(s) 213, 218, 293, 490
AhlI ACTAGT 1 cut(s) 220
AjnI CCWGG 1 cut(s) 482
AluBI AGCT 2 cut(s) 99, 722
AluI AGCT 2 cut(s) 99, 722
Alw21I GWGCWC 2 cut(s) 101, 288
Alw26I GTCTC 5 cut(s) 16, 182, 507, 707, 782
AlwI GGATC 2 cut(s) 204, 575
Aor51HI AGCGCT 1 cut(s) 604
AoxI GGCC 2 cut(s) 37, 832
ApeKI GCWGC 2 cut(s) 411, 418
ApoI RAATTY 2 cut(s) 293, 809
Asp700I GAANNNNTTC 1 cut(s) 604
AspLEI GCGC 3 cut(s) 416, 418, 605
AspS9I GGNCC 1 cut(s) 525
AsuC2I CCSGG 1 cut(s) 137
AsuHPI GGTGA 3 cut(s) 151, 193, 740
AsuNHI GCTAGC 1 cut(s) 32
AvaII GGWCC 1 cut(s) 525
BanII GRGCYC 1 cut(s) 101
Bbv12I GWGCWC 2 cut(s) 101, 288
BbvI GCAGC 2 cut(s) 398, 405
BccI CCATC 1 cut(s) 263
BciT130I CCWGG 1 cut(s) 484
BclI TGATCA 1 cut(s) 463
BcnI CCSGG 1 cut(s) 137
BcoDI GTCTC 5 cut(s) 16, 182, 507, 707, 782
BcuI ACTAGT 1 cut(s) 220
BfaI CTAG 3 cut(s) 33, 221, 752
BfmI CTRYAG 1 cut(s) 609
BfoI RGCGCY 1 cut(s) 606
BisI GCNGC 4 cut(s) 37, 87, 412, 419
BlsI GCNGC 4 cut(s) 38, 88, 413, 420
Bme1390I CCNGG 2 cut(s) 137, 484
Bme18I GGWCC 1 cut(s) 525
BmgT120I GGNCC 1 cut(s) 525
BmiI GGNNCC 1 cut(s) 349
BmrFI CCNGG 2 cut(s) 137, 484
BmsI GCATC 1 cut(s) 132
BmtI GCTAGC 1 cut(s) 36
BpmI CTGGAG 1 cut(s) 324
BpuEI CTTGAG 1 cut(s) 702
BpuMI CCSGG 1 cut(s) 137
BsaHI GRCGYC 1 cut(s) 684
BsaJI CCNNGG 2 cut(s) 427, 521
Bsc4I CCNNNNNNNGG 2 cut(s) 534, 757
Bse118I RCCGGY 1 cut(s) 386
Bse1I ACTGG 1 cut(s) 368
BseBI CCWGG 1 cut(s) 484
BseDI CCNNGG 2 cut(s) 427, 521
BseGI GGATG 2 cut(s) 398, 685
BseLI CCNNNNNNNGG 2 cut(s) 534, 757
BseMII CTCAG 1 cut(s) 777
BseNI ACTGG 1 cut(s) 368
BsePI GCGCGC 1 cut(s) 414
BseXI GCAGC 2 cut(s) 398, 405
BsgI GTGCAG 1 cut(s) 676
Bsh1236I CGCG 1 cut(s) 416
BshFI GGCC 2 cut(s) 39, 834
BsiHKAI GWGCWC 2 cut(s) 101, 288
BsiSI CCGG 2 cut(s) 136, 387
BslFI GGGAC 2 cut(s) 7, 767
BslI CCNNNNNNNGG 2 cut(s) 534, 757
BsmAI GTCTC 5 cut(s) 16, 182, 507, 707, 782
BsmBI CGTCTC 1 cut(s) 16
BsmFI GGGAC 2 cut(s) 7, 767
BsnI GGCC 2 cut(s) 39, 834
Bsp1286I GDGCHC 2 cut(s) 101, 288
Bsp1407I TGTACA 1 cut(s) 68
Bsp143I GATC 5 cut(s) 184, 196, 253, 463, 567
BspACI CCGC 3 cut(s) 36, 86, 390
BspANI GGCC 2 cut(s) 39, 834
BspCNI CTCAG 1 cut(s) 778
BspFNI CGCG 1 cut(s) 416
BspLI GGNNCC 1 cut(s) 349
BspOI GCTAGC 1 cut(s) 36
BspPI GGATC 2 cut(s) 204, 575
BspQI GCTCTTC 2 cut(s) 428, 693
BsrFI RCCGGY 1 cut(s) 386
BsrGI TGTACA 1 cut(s) 68
BsrI ACTGG 1 cut(s) 368
BssAI RCCGGY 1 cut(s) 386
BssECI CCNNGG 2 cut(s) 427, 521
BssHII GCGCGC 1 cut(s) 414
BssMI GATC 5 cut(s) 184, 196, 253, 463, 567
BssNI GRCGYC 1 cut(s) 684
BssT1I CCWWGG 2 cut(s) 427, 521
Bst2UI CCWGG 1 cut(s) 484
Bst4CI ACNGT 1 cut(s) 827
Bst6I CTCTTC 2 cut(s) 428, 693
BstACI GRCGYC 1 cut(s) 684
BstAUI TGTACA 1 cut(s) 68
BstC8I GCNNGC 4 cut(s) 34, 388, 416, 480
BstDEI CTNAG 2 cut(s) 743, 786
BstENI CCTNNNNNAGG 1 cut(s) 532
BstF5I GGATG 2 cut(s) 398, 685
BstFNI CGCG 1 cut(s) 416
BstH2I RGCGCY 1 cut(s) 606
BstHHI GCGC 3 cut(s) 416, 418, 605
BstKTI GATC 5 cut(s) 187, 199, 256, 466, 570
BstMAI GTCTC 5 cut(s) 16, 182, 507, 707, 782
BstMBI GATC 5 cut(s) 184, 196, 253, 463, 567
BstNI CCWGG 1 cut(s) 484
BstSCI CCNGG 2 cut(s) 135, 482
BstSFI CTRYAG 1 cut(s) 609
BstUI CGCG 1 cut(s) 416
BstV1I GCAGC 2 cut(s) 398, 405
BstX2I RGATCY 2 cut(s) 196, 567
BstYI RGATCY 2 cut(s) 196, 567
BsuRI GGCC 2 cut(s) 39, 834
BtsCI GGATG 2 cut(s) 398, 685
BtsIMutI CAGTG 2 cut(s) 361, 693
Cac8I GCNNGC 4 cut(s) 34, 388, 416, 480
CfoI GCGC 3 cut(s) 416, 418, 605
Cfr10I RCCGGY 1 cut(s) 386
Cfr13I GGNCC 1 cut(s) 525
CseI GACGC 1 cut(s) 692
Csp6I GTAC 2 cut(s) 69, 643
CviAII CATG 4 cut(s) 281, 577, 640, 676
CviQI GTAC 2 cut(s) 69, 643
DdeI CTNAG 2 cut(s) 743, 786
DpnI GATC 5 cut(s) 186, 198, 255, 465, 569
DpnII GATC 5 cut(s) 184, 196, 253, 463, 567
DraIII CACNNNGTG 1 cut(s) 139
Eam1104I CTCTTC 2 cut(s) 428, 693
EarI CTCTTC 2 cut(s) 428, 693
EciI GGCGGA 1 cut(s) 405
Ecl136II GAGCTC 1 cut(s) 99
Eco130I CCWWGG 2 cut(s) 427, 521
Eco147I AGGCCT 1 cut(s) 834
Eco24I GRGCYC 1 cut(s) 101
Eco47I GGWCC 1 cut(s) 525
Eco47III AGCGCT 1 cut(s) 604
Eco53kI GAGCTC 1 cut(s) 99
Eco57I CTGAAG 1 cut(s) 717
EcoICRI GAGCTC 1 cut(s) 99
EcoNI CCTNNNNNAGG 1 cut(s) 532
EcoRII CCWGG 1 cut(s) 482
EcoT14I CCWWGG 2 cut(s) 427, 521
EcoT38I GRGCYC 1 cut(s) 101
ErhI CCWWGG 2 cut(s) 427, 521
Esp3I CGTCTC 1 cut(s) 16
FaeI CATG 4 cut(s) 284, 580, 643, 679
FaqI GGGAC 2 cut(s) 7, 767
FatI CATG 4 cut(s) 280, 576, 639, 675
FauNDI CATATG 1 cut(s) 73
FbaI TGATCA 1 cut(s) 463
FblI GTMKAC 1 cut(s) 762
Fnu4HI GCNGC 4 cut(s) 37, 87, 412, 419
FokI GGATG 2 cut(s) 405, 692
FriOI GRGCYC 1 cut(s) 101
Fsp4HI GCNGC 4 cut(s) 37, 87, 412, 419
FspBI CTAG 3 cut(s) 33, 221, 752
GlaI GCGC 3 cut(s) 415, 417, 604
GluI GCNGC 4 cut(s) 37, 87, 412, 419
GsuI CTGGAG 1 cut(s) 324
HaeII RGCGCY 1 cut(s) 606
HaeIII GGCC 2 cut(s) 39, 834
HapII CCGG 2 cut(s) 136, 387
HgaI GACGC 1 cut(s) 692
HhaI GCGC 3 cut(s) 416, 418, 605
Hin1I GRCGYC 1 cut(s) 684
Hin1II CATG 4 cut(s) 284, 580, 643, 679
Hin6I GCGC 3 cut(s) 414, 416, 603
HinP1I GCGC 3 cut(s) 414, 416, 603
HincII GTYRAC 2 cut(s) 616, 763
HindII GTYRAC 2 cut(s) 616, 763
HinfI GANTC 3 cut(s) 152, 277, 715
HpaII CCGG 2 cut(s) 136, 387
HphI GGTGA 3 cut(s) 151, 193, 740
Hpy166II GTNNAC 2 cut(s) 616, 763
Hpy188I TCNGA 3 cut(s) 157, 266, 347
Hpy188III TCNNGA 2 cut(s) 303, 773
Hpy8I GTNNAC 2 cut(s) 616, 763
HpyAV CCTTC 2 cut(s) 63, 647
HpyCH4III ACNGT 1 cut(s) 827
HpyCH4IV ACGT 2 cut(s) 379, 627
HpyCH4V TGCA 5 cut(s) 133, 145, 693, 794, 806
HpyF3I CTNAG 2 cut(s) 743, 786
HpySE526I ACGT 2 cut(s) 379, 627
Hsp92I GRCGYC 1 cut(s) 684
Hsp92II CATG 4 cut(s) 284, 580, 643, 679
HspAI GCGC 3 cut(s) 414, 416, 603
KroI GCCGGC 1 cut(s) 386
KroNI GCCGGC 1 cut(s) 388
Ksp22I TGATCA 1 cut(s) 463
Kzo9I GATC 5 cut(s) 184, 196, 253, 463, 567
LguI GCTCTTC 2 cut(s) 428, 693
LmnI GCTCC 1 cut(s) 347
Lsp1109I GCAGC 2 cut(s) 398, 405
LweI GCATC 1 cut(s) 132
MaeI CTAG 3 cut(s) 33, 221, 752
MaeII ACGT 2 cut(s) 379, 627
MaeIII GTNAC 2 cut(s) 359, 746
MalI GATC 5 cut(s) 186, 198, 255, 465, 569
MboI GATC 5 cut(s) 184, 196, 253, 463, 567
MboII GAAGA 6 cut(s) 260, 395, 415, 562, 710, 806
MflI RGATCY 2 cut(s) 196, 567
MhlI GDGCHC 2 cut(s) 101, 288
MluCI AATT 6 cut(s) 213, 260, 293, 704, 737, 809
MlyI GAGTC 3 cut(s) 161, 286, 709
MnlI CCTC 7 cut(s) 35, 91, 361, 584, 632, 748, 824
MroNI GCCGGC 1 cut(s) 386
MroXI GAANNNNTTC 1 cut(s) 604
MseI TTAA 2 cut(s) 533, 819
MspI CCGG 2 cut(s) 136, 387
MspR9I CCNGG 2 cut(s) 137, 484
MvaI CCWGG 1 cut(s) 484
MvnI CGCG 1 cut(s) 416
NaeI GCCGGC 1 cut(s) 388
NciI CCSGG 1 cut(s) 137
NdeI CATATG 1 cut(s) 73
NdeII GATC 5 cut(s) 184, 196, 253, 463, 567
NgoMIV GCCGGC 1 cut(s) 386
NheI GCTAGC 1 cut(s) 32
NlaIII CATG 4 cut(s) 284, 580, 643, 679
NlaIV GGNNCC 1 cut(s) 349
NmuCI GTSAC 2 cut(s) 359, 746
PauI GCGCGC 1 cut(s) 414
PceI AGGCCT 1 cut(s) 834
PciSI GCTCTTC 2 cut(s) 428, 693
PdiI GCCGGC 1 cut(s) 388
PdmI GAANNNNTTC 1 cut(s) 604
PflFI GACNNNGTC 1 cut(s) 779
PkrI GCNGC 4 cut(s) 38, 88, 413, 420
PleI GAGTC 3 cut(s) 160, 285, 709
PpsI GAGTC 3 cut(s) 160, 285, 709
Psp124BI GAGCTC 1 cut(s) 101
Psp1406I AACGTT 1 cut(s) 627
Psp6I CCWGG 1 cut(s) 482
PspGI CCWGG 1 cut(s) 482
PspN4I GGNNCC 1 cut(s) 349
PspPI GGNCC 1 cut(s) 525
PsuI RGATCY 2 cut(s) 196, 567
PsyI GACNNNGTC 1 cut(s) 779
PteI GCGCGC 1 cut(s) 414
RsaI GTAC 2 cut(s) 70, 644
RsaNI GTAC 2 cut(s) 69, 643
SacI GAGCTC 1 cut(s) 101
SalI GTCGAC 1 cut(s) 761
SapI GCTCTTC 2 cut(s) 428, 693
SaqAI TTAA 2 cut(s) 533, 819
SatI GCNGC 4 cut(s) 37, 87, 412, 419
Sau3AI GATC 5 cut(s) 184, 196, 253, 463, 567
Sau96I GGNCC 1 cut(s) 525
SchI GAGTC 3 cut(s) 161, 286, 709
ScrFI CCNGG 2 cut(s) 137, 484
SduI GDGCHC 2 cut(s) 101, 288
SfaNI GCATC 1 cut(s) 132
SfcI CTRYAG 1 cut(s) 609
SinI GGWCC 1 cut(s) 525
SmlI CTYRAG 1 cut(s) 717
SmoI CTYRAG 1 cut(s) 717
SpeI ACTAGT 1 cut(s) 220
Sse9I AATT 6 cut(s) 213, 260, 293, 704, 737, 809
SseBI AGGCCT 1 cut(s) 834
SsiI CCGC 3 cut(s) 36, 86, 390
SspI AATATT 1 cut(s) 728
SspMI CTAG 3 cut(s) 33, 221, 752
SstI GAGCTC 1 cut(s) 101
StuI AGGCCT 1 cut(s) 834
StyD4I CCNGG 2 cut(s) 135, 482
StyI CCWWGG 2 cut(s) 427, 521
TaaI ACNGT 1 cut(s) 827
TaiI ACGT 2 cut(s) 382, 630
TaqI TCGA 2 cut(s) 374, 762
TasI AATT 6 cut(s) 213, 260, 293, 704, 737, 809
TatI WGTACW 2 cut(s) 68, 642
TauI GCSGC 2 cut(s) 39, 89
Tru1I TTAA 2 cut(s) 533, 819
Tru9I TTAA 2 cut(s) 533, 819
TscAI CASTG 2 cut(s) 368, 700
TseFI GTSAC 2 cut(s) 359, 746
TseI GCWGC 2 cut(s) 411, 418
Tsp45I GTSAC 2 cut(s) 359, 746
TspDTI ATGAA 1 cut(s) 429
TspRI CASTG 2 cut(s) 368, 700
Tth111I GACNNNGTC 1 cut(s) 779
VpaK11BI GGWCC 1 cut(s) 525
XagI CCTNNNNNAGG 1 cut(s) 532
XapI RAATTY 2 cut(s) 293, 809
XcmI CCANNNNNNNNNTGG 1 cut(s) 266
XmiI GTMKAC 1 cut(s) 762
XmnI GAANNNNTTC 1 cut(s) 604
XspI CTAG 3 cut(s) 33, 221, 752
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.