Rroxscaffold_5G00354160

F-box FBD LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0000467
Physical Location & Seq
Reverse (-)
32600276 .. 32602000
1725 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00354160.1

Sequence Viewer

Length: 450 bp
ATGGACTTTTATGAAGAAAATTATGATGAGTGGACCGACTTGGATTACGCCAACTCTGCTGAAAAGCAATACTGCGAGACTCGAGCTCAATATTTGAGCCCCTTTCTTAGTCACCTAAAGGTGGTCGACATTAACCTTAGCAACATGATCCCTGAGAATGCAATAACTTTTGCAACATTTTTCCTTAAATATGGAAGAGGCTTGCAAAAGGTGAATCTTACATATTGTAGGGGAAAAAGTAATCTATCTCCCAATTTGCTGAAAGATATCATTGCTTTAATGGAGGGTCTCCCCGGGCATCTGCAGATGTTGAAATCTCAATTTCTTACTATTGAAGCTACTAGAGATTTTTCTTTAAGGTTTTCGAATTCCGACATTGCCGAGATGGGTGAAATGAATAGGGATCCAAAACCTCCATCACCATCGGGCTCATGGCCTCTGTCGAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBD

Protein Analysis

149

Amino Acids

17.03

Weight (kDa)

4.99

Isoelectric Point (pI)

35.44

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000467)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g02550 FvH4_6g26921 FvH4_6g45630
malus_domestica MD01G1113200.v1.1 MD09G1101600.v1.1 MD17G1084600.v1.1
prunus_persica Prupe.3G224400_v2.0.a1 Prupe.3G224500_v2.0.a1 Prupe.3G224600_v2.0.a1
pyrus_communis pycom02g19930 pycom09g00760 pycom09g00770 pycom17g08170
rosa_chinensis RchiOBHm_Chr1g0350511 RchiOBHm_Chr2g0086171 RchiOBHm_Chr2g0117831 RchiOBHm_Chr3g0450391 RchiOBHm_Chr4g0409631 RchiOBHm_Chr5g0039731
rosa_laevigata RLG00000008538 RLG00000018375 RLG00000021415 RLG00000028481 RLG00000033926 RLG00000033937 RLG00000033938 RLG00000033939 RLG00000033941
rosa_multiflora Rmu_sc0000103.1_g000011 Rmu_sc0000330.1_g000009 Rmu_sc0000652.1_g000002 Rmu_sc0001507.1_g000017 Rmu_sc0004020.1_g000010 Rmu_sc0026676.1_g000001 Rmu_ssc0000083.1_g000022 Rmu_ssc0000400.1_g000021
rosa_roxburghii Rroxscaffold_1G00040760 Rroxscaffold_1G00041490 Rroxscaffold_1G00041500 Rroxscaffold_1G00041630 Rroxscaffold_2G00087990 Rroxscaffold_2G00126200 Rroxscaffold_4G00304800 Rroxscaffold_5G00354160 Rroxscaffold_5G00354170
rosa_rugosa Rorug01G0211500 Rorug02G0214300 Rorug02G0496800 Rorug02G0627700 Rorug04G0095600 Rorug05G0181700
rosa_samantha Rh1AG226300 Rh1BG194700 Rh1CG211100 Rh1DG222900 Rh2AG270500 Rh2AG270600 Rh2AG562900 Rh2AG563000 Rh2BG281900 Rh2BG282000 Rh2BG575700 Rh2CG269300 Rh2CG269400 Rh2DG278300 Rh2DG296200 Rh2DG585900 Rh3AG028000 Rh3AG028100 Rh3BG028500 Rh3BG028600 Rh3CG027300 Rh3CG027400 Rh3DG028400 Rh3DG028500 Rh4BG156800 Rh4CG167300 Rh4CG167400 Rh4DG151100 Rh5AG268000 Rh5BG272400 Rh5BG272500 Rh5CG304000 Rh5CG305000 Rh5CG305100 Rh5DG280500
rosa_wichuraiana Rw1G019530 Rw2G021370 Rw4G012860 Rw4G012970 Rw5G025070

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 126
AclWI GGATC 3 cut(s) 142, 398, 411
AcsI RAATTY 1 cut(s) 367
AfiI CCNNNNNNNGG 1 cut(s) 121
AgsI TTSAA 2 cut(s) 313, 335
AluBI AGCT 2 cut(s) 86, 338
AluI AGCT 2 cut(s) 86, 338
Alw21I GWGCWC 1 cut(s) 88
Alw26I GTCTC 2 cut(s) 71, 293
AlwI GGATC 3 cut(s) 142, 398, 411
Ama87I CYCGRG 2 cut(s) 81, 293
AoxI GGCC 1 cut(s) 434
ApoI RAATTY 1 cut(s) 367
AspS9I GGNCC 1 cut(s) 33
AsuC2I CCSGG 2 cut(s) 294, 295
AsuHPI GGTGA 4 cut(s) 104, 223, 401, 411
AsuII TTCGAA 1 cut(s) 365
AvaI CYCGRG 2 cut(s) 81, 293
AvaII GGWCC 1 cut(s) 33
BamHI GGATCC 1 cut(s) 403
BanII GRGCYC 3 cut(s) 88, 101, 431
Bbv12I GWGCWC 1 cut(s) 88
BccI CCATC 3 cut(s) 379, 424, 430
BcnI CCSGG 2 cut(s) 294, 295
BcoDI GTCTC 2 cut(s) 71, 293
BfaI CTAG 1 cut(s) 342
BfmI CTRYAG 1 cut(s) 302
Bme1390I CCNGG 2 cut(s) 294, 295
Bme18I GGWCC 1 cut(s) 33
BmeT110I CYCGRG 2 cut(s) 81, 293
BmgT120I GGNCC 1 cut(s) 33
BmiI GGNNCC 1 cut(s) 405
BmrFI CCNGG 2 cut(s) 294, 295
BmsI GCATC 1 cut(s) 307
Bpu10I CCTNAGC 1 cut(s) 137
Bpu14I TTCGAA 1 cut(s) 365
BpuMI CCSGG 2 cut(s) 294, 295
BsaI GGTCTC 1 cut(s) 293
BsaJI CCNNGG 2 cut(s) 292, 293
Bsc4I CCNNNNNNNGG 1 cut(s) 121
Bse3DI GCAATG 2 cut(s) 270, 375
BseDI CCNNGG 2 cut(s) 292, 293
BseLI CCNNNNNNNGG 1 cut(s) 121
BseMI GCAATG 2 cut(s) 270, 375
BseMII CTCAG 1 cut(s) 144
BshFI GGCC 1 cut(s) 436
BsiHKAI GWGCWC 1 cut(s) 88
BsiHKCI CYCGRG 2 cut(s) 81, 293
BsiSI CCGG 1 cut(s) 294
BslI CCNNNNNNNGG 1 cut(s) 121
BsmAI GTCTC 2 cut(s) 71, 293
BsmI GAATGC 1 cut(s) 163
BsnI GGCC 1 cut(s) 436
Bso31I GGTCTC 1 cut(s) 293
BsoBI CYCGRG 2 cut(s) 81, 293
Bsp119I TTCGAA 1 cut(s) 365
Bsp1286I GDGCHC 3 cut(s) 88, 101, 431
Bsp143I GATC 2 cut(s) 147, 403
BspANI GGCC 1 cut(s) 436
BspCNI CTCAG 1 cut(s) 145
BspLI GGNNCC 1 cut(s) 405
BspMAI CTGCAG 1 cut(s) 306
BspPI GGATC 3 cut(s) 142, 398, 411
BspT104I TTCGAA 1 cut(s) 365
BspTNI GGTCTC 1 cut(s) 293
BsrDI GCAATG 2 cut(s) 270, 375
BssECI CCNNGG 2 cut(s) 292, 293
BssMI GATC 2 cut(s) 147, 403
Bst6I CTCTTC 1 cut(s) 190
BstBI TTCGAA 1 cut(s) 365
BstC8I GCNNGC 1 cut(s) 203
BstDEI CTNAG 3 cut(s) 107, 137, 153
BstKTI GATC 2 cut(s) 150, 406
BstMAI GTCTC 2 cut(s) 71, 293
BstMBI GATC 2 cut(s) 147, 403
BstMWI GCNNNNNNNGC 1 cut(s) 56
BstSCI CCNGG 2 cut(s) 292, 293
BstSFI CTRYAG 1 cut(s) 302
BstX2I RGATCY 1 cut(s) 403
BstYI RGATCY 1 cut(s) 403
BsuRI GGCC 1 cut(s) 436
Cac8I GCNNGC 1 cut(s) 203
Cfr13I GGNCC 1 cut(s) 33
Cfr9I CCCGGG 1 cut(s) 293
CviAII CATG 2 cut(s) 145, 432
CviJI RGCY 6 cut(s) 86, 99, 201, 338, 429, 436
CviKI_1 RGCY 6 cut(s) 86, 99, 201, 338, 429, 436
DdeI CTNAG 3 cut(s) 107, 137, 153
DpnI GATC 2 cut(s) 149, 405
DpnII GATC 2 cut(s) 147, 403
Eam1104I CTCTTC 1 cut(s) 190
EarI CTCTTC 1 cut(s) 190
Ecl136II GAGCTC 1 cut(s) 86
Eco24I GRGCYC 3 cut(s) 88, 101, 431
Eco31I GGTCTC 1 cut(s) 293
Eco32I GATATC 1 cut(s) 268
Eco47I GGWCC 1 cut(s) 33
Eco53kI GAGCTC 1 cut(s) 86
Eco88I CYCGRG 2 cut(s) 81, 293
EcoICRI GAGCTC 1 cut(s) 86
EcoRI GAATTC 1 cut(s) 367
EcoRV GATATC 1 cut(s) 268
EcoT38I GRGCYC 3 cut(s) 88, 101, 431
FaeI CATG 2 cut(s) 148, 435
FaiI YATR 6 cut(s) 12, 24, 146, 192, 223, 433
FatI CATG 2 cut(s) 144, 431
FblI GTMKAC 1 cut(s) 126
FriOI GRGCYC 3 cut(s) 88, 101, 431
FspBI CTAG 1 cut(s) 342
HaeIII GGCC 1 cut(s) 436
HapII CCGG 1 cut(s) 294
Hin1II CATG 2 cut(s) 148, 435
HincII GTYRAC 1 cut(s) 127
HindII GTYRAC 1 cut(s) 127
HinfI GANTC 2 cut(s) 79, 214
HpaII CCGG 1 cut(s) 294
HphI GGTGA 4 cut(s) 104, 223, 401, 411
Hpy166II GTNNAC 2 cut(s) 33, 127
Hpy188I TCNGA 1 cut(s) 373
Hpy8I GTNNAC 2 cut(s) 33, 127
HpyCH4V TGCA 4 cut(s) 161, 173, 205, 304
HpyF10VI GCNNNNNNNGC 1 cut(s) 56
HpyF3I CTNAG 3 cut(s) 107, 137, 153
Hsp92II CATG 2 cut(s) 148, 435
Kzo9I GATC 2 cut(s) 147, 403
LpnPI CCDG 2 cut(s) 165, 307
LweI GCATC 1 cut(s) 307
MaeI CTAG 1 cut(s) 342
MaeIII GTNAC 1 cut(s) 110
MalI GATC 2 cut(s) 149, 405
MboI GATC 2 cut(s) 147, 403
MboII GAAGA 2 cut(s) 26, 207
MflI RGATCY 1 cut(s) 403
MhlI GDGCHC 3 cut(s) 88, 101, 431
MluCI AATT 4 cut(s) 19, 253, 320, 367
MlyI GAGTC 1 cut(s) 73
MmeI TCCRAC 1 cut(s) 396
MnlI CCTC 4 cut(s) 191, 277, 423, 447
MseI TTAA 4 cut(s) 132, 186, 278, 356
MspI CCGG 1 cut(s) 294
MspR9I CCNGG 2 cut(s) 294, 295
Mva1269I GAATGC 1 cut(s) 163
MwoI GCNNNNNNNGC 1 cut(s) 56
NciI CCSGG 2 cut(s) 294, 295
NdeII GATC 2 cut(s) 147, 403
NlaIII CATG 2 cut(s) 148, 435
NlaIV GGNNCC 1 cut(s) 405
NmeAIII GCCGAG 1 cut(s) 406
NmuCI GTSAC 1 cut(s) 110
NspV TTCGAA 1 cut(s) 365
PaeR7I CTCGAG 1 cut(s) 81
PctI GAATGC 1 cut(s) 163
PfeI GAWTC 1 cut(s) 214
PleI GAGTC 1 cut(s) 73
PpsI GAGTC 1 cut(s) 73
Psp124BI GAGCTC 1 cut(s) 88
PspN4I GGNNCC 1 cut(s) 405
PspPI GGNCC 1 cut(s) 33
PspXI VCTCGAGB 1 cut(s) 81
PstI CTGCAG 1 cut(s) 306
PsuI RGATCY 1 cut(s) 403
SacI GAGCTC 1 cut(s) 88
SalI GTCGAC 1 cut(s) 125
SaqAI TTAA 4 cut(s) 132, 186, 278, 356
Sau3AI GATC 2 cut(s) 147, 403
Sau96I GGNCC 1 cut(s) 33
SchI GAGTC 1 cut(s) 73
ScrFI CCNGG 2 cut(s) 294, 295
SduI GDGCHC 3 cut(s) 88, 101, 431
SetI ASST 8 cut(s) 88, 117, 123, 138, 213, 340, 362, 415
SfaNI GCATC 1 cut(s) 307
SfcI CTRYAG 1 cut(s) 302
Sfr274I CTCGAG 1 cut(s) 81
SfuI TTCGAA 1 cut(s) 365
SinI GGWCC 1 cut(s) 33
SlaI CTCGAG 1 cut(s) 81
SmaI CCCGGG 1 cut(s) 295
SmlI CTYRAG 1 cut(s) 81
SmoI CTYRAG 1 cut(s) 81
Sse9I AATT 4 cut(s) 19, 253, 320, 367
SspI AATATT 1 cut(s) 92
SspMI CTAG 1 cut(s) 342
SstI GAGCTC 1 cut(s) 88
StyD4I CCNGG 2 cut(s) 292, 293
TaqI TCGA 4 cut(s) 82, 126, 365, 443
TaqII GACCGA 1 cut(s) 50
TasI AATT 4 cut(s) 19, 253, 320, 367
TfiI GAWTC 1 cut(s) 214
Tru1I TTAA 4 cut(s) 132, 186, 278, 356
Tru9I TTAA 4 cut(s) 132, 186, 278, 356
TseFI GTSAC 1 cut(s) 110
Tsp45I GTSAC 1 cut(s) 110
TspDTI ATGAA 2 cut(s) 27, 410
TspMI CCCGGG 1 cut(s) 293
VpaK11BI GGWCC 1 cut(s) 33
XapI RAATTY 1 cut(s) 367
XcmI CCANNNNNNNNNTGG 1 cut(s) 429
XhoI CTCGAG 1 cut(s) 81
XmaI CCCGGG 1 cut(s) 293
XmiI GTMKAC 1 cut(s) 126
XspI CTAG 1 cut(s) 342
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.