Rmu_sc0001507.1_g000017

Calmodulin-binding transcription activator

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001507.1
OG0000467
Physical Location & Seq
Forward (+)
47183 .. 49824
2642 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001507.1_g000017.1.cds

Sequence Viewer

Length: 771 bp
atggatctatatagcatggacatctctggaatgagactggaggagttgttttgtgctgaaaattgcatcgatggttgggtcaacattttgccccgaatctacaatacttgtacgcccaaaagatcttgcattggttgttcgtttctgttcggcataacaaagacaaatatttttcataacagtgttatcaatcttctttcccattcatcccaagctgaaatccttgagatactcgatgactacctcgagattctatcagacatttatgttgaatttggtggtgtacctttctcatttggcaaacttgaaaccttgaaaattgggtacacaattaagcagagatatatcccgggtatagcatgcctgttgaagagctctcccgtagtccacaccctcgacattgactttctctctttcgaagaaaatgataagtggaataacattatgttggataatgccaattgcactcaagaaaaaagtgcggacgtcgctccttcggcctcgatcgagcagcgacggcccggcgcggcttgccggagggacgccgggggtcgtgcggaggggtatgcggtgtggtggagtcgtcggcaacggttctgcggtgctgcacagaacctgcaactgcaggtgaggtggctgcctagaaacaggcaagcccgacctcgaacgccgcccataagaggtctgggacgcctccggcctccctcaggccagccccgcgccgcggtcgtcgctttgaacccgcctgctgcgtcaacgtccgcattttag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000981 GO:0000982 GO:0001077 GO:0001228 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006351 GO:0006355 GO:0006357 GO:0006366 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0007275 GO:0007568 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009266 GO:0009409 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009628 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010150 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016070 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031347 GO:0031349 GO:0032501 GO:0032502 GO:0032774 GO:0033554 GO:0034641 GO:0034645 GO:0034654 GO:0042742 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0048366 GO:0048367 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051704 GO:0051707 GO:0051716 GO:0060255 GO:0065007 GO:0070417 GO:0071704 GO:0080090 GO:0080134 GO:0090304 GO:0090693 GO:0097159 GO:0097659 GO:0098542 GO:0099402 GO:0140110 GO:1900367 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1902680 GO:1903506 GO:1903508 GO:2000068 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ank Ank_2 CG-1 IQ TIG

Protein Analysis

256

Amino Acids

28.66

Weight (kDa)

8.58

Isoelectric Point (pI)

63.37

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000467)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g02550 FvH4_6g26921 FvH4_6g45630
malus_domestica MD01G1113200.v1.1 MD09G1101600.v1.1 MD17G1084600.v1.1
prunus_persica Prupe.3G224400_v2.0.a1 Prupe.3G224500_v2.0.a1 Prupe.3G224600_v2.0.a1
pyrus_communis pycom02g19930 pycom09g00760 pycom09g00770 pycom17g08170
rosa_chinensis RchiOBHm_Chr1g0350511 RchiOBHm_Chr2g0086171 RchiOBHm_Chr2g0117831 RchiOBHm_Chr3g0450391 RchiOBHm_Chr4g0409631 RchiOBHm_Chr5g0039731
rosa_laevigata RLG00000008538 RLG00000018375 RLG00000021415 RLG00000028481 RLG00000033926 RLG00000033937 RLG00000033938 RLG00000033939 RLG00000033941
rosa_multiflora Rmu_sc0000103.1_g000011 Rmu_sc0000330.1_g000009 Rmu_sc0000652.1_g000002 Rmu_sc0001507.1_g000017 Rmu_sc0004020.1_g000010 Rmu_sc0026676.1_g000001 Rmu_ssc0000083.1_g000022 Rmu_ssc0000400.1_g000021
rosa_roxburghii Rroxscaffold_1G00040760 Rroxscaffold_1G00041490 Rroxscaffold_1G00041500 Rroxscaffold_1G00041630 Rroxscaffold_2G00087990 Rroxscaffold_2G00126200 Rroxscaffold_4G00304800 Rroxscaffold_5G00354160 Rroxscaffold_5G00354170
rosa_rugosa Rorug01G0211500 Rorug02G0214300 Rorug02G0496800 Rorug02G0627700 Rorug04G0095600 Rorug05G0181700
rosa_samantha Rh1AG226300 Rh1BG194700 Rh1CG211100 Rh1DG222900 Rh2AG270500 Rh2AG270600 Rh2AG562900 Rh2AG563000 Rh2BG281900 Rh2BG282000 Rh2BG575700 Rh2CG269300 Rh2CG269400 Rh2DG278300 Rh2DG296200 Rh2DG585900 Rh3AG028000 Rh3AG028100 Rh3BG028500 Rh3BG028600 Rh3CG027300 Rh3CG027400 Rh3DG028400 Rh3DG028500 Rh4BG156800 Rh4CG167300 Rh4CG167400 Rh4DG151100 Rh5AG268000 Rh5BG272400 Rh5BG272500 Rh5CG304000 Rh5CG305000 Rh5CG305100 Rh5DG280500
rosa_wichuraiana Rw1G019530 Rw2G021370 Rw4G012860 Rw4G012970 Rw5G025070

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 616
AatII GACGTC 1 cut(s) 489
Acc36I ACCTGC 2 cut(s) 616, 624
AccII CGCG 3 cut(s) 527, 720, 725
AclWI GGATC 1 cut(s) 12
AcsI RAATTY 1 cut(s) 272
AcyI GRCGYC 3 cut(s) 486, 543, 691
AfaI GTAC 3 cut(s) 112, 285, 326
AfiI CCNNNNNNNGG 3 cut(s) 680, 707, 724
AgsI TTSAA 5 cut(s) 272, 308, 316, 370, 739
AluBI AGCT 2 cut(s) 215, 375
AluI AGCT 2 cut(s) 215, 375
Alw21I GWGCWC 1 cut(s) 377
Alw26I GTCTC 1 cut(s) 28
AlwI GGATC 1 cut(s) 12
AlwNI CAGNNNCTG 1 cut(s) 616
Ama87I CYCGRG 2 cut(s) 245, 349
AoxI GGCC 4 cut(s) 498, 518, 698, 709
ApeKI GCWGC 4 cut(s) 511, 605, 637, 749
ApoI RAATTY 1 cut(s) 272
AspLEI GCGC 2 cut(s) 527, 722
AspS9I GGNCC 1 cut(s) 519
AsuC2I CCSGG 4 cut(s) 350, 351, 522, 547
AsuHPI GGTGA 1 cut(s) 640
AsuII TTCGAA 1 cut(s) 417
AvaI CYCGRG 2 cut(s) 245, 349
AxyI CCTNAGG 1 cut(s) 706
BanII GRGCYC 1 cut(s) 377
Bbv12I GWGCWC 1 cut(s) 377
BbvI GCAGC 4 cut(s) 523, 592, 624, 736
BccI CCATC 1 cut(s) 65
BceAI ACGGC 1 cut(s) 533
BcnI CCSGG 4 cut(s) 350, 351, 522, 547
BcoDI GTCTC 1 cut(s) 28
BfaI CTAG 1 cut(s) 642
BfmI CTRYAG 1 cut(s) 623
BfuAI ACCTGC 2 cut(s) 616, 624
BglII AGATCT 1 cut(s) 122
BisI GCNGC 7 cut(s) 512, 528, 606, 638, 671, 723, 750
BlsI GCNGC 7 cut(s) 513, 529, 607, 639, 672, 724, 751
Bme1390I CCNGG 4 cut(s) 350, 351, 522, 547
BmeT110I CYCGRG 2 cut(s) 245, 349
BmgT120I GGNCC 1 cut(s) 519
BmrFI CCNGG 4 cut(s) 350, 351, 522, 547
BmsI GCATC 1 cut(s) 75
BpmI CTGGAG 1 cut(s) 59
Bpu14I TTCGAA 1 cut(s) 417
BpuEI CTTGAG 2 cut(s) 245, 453
BpuMI CCSGG 4 cut(s) 350, 351, 522, 547
Bsa29I ATCGAT 1 cut(s) 69
BsaHI GRCGYC 3 cut(s) 486, 543, 691
BsaJI CCNNGG 3 cut(s) 349, 546, 723
BsaXI ACNNNNNCTCC 2 cut(s) 32, 62
Bsc4I CCNNNNNNNGG 3 cut(s) 680, 707, 724
Bse1I ACTGG 1 cut(s) 42
Bse21I CCTNAGG 1 cut(s) 706
BseCI ATCGAT 1 cut(s) 69
BseDI CCNNGG 3 cut(s) 349, 546, 723
BseGI GGATG 1 cut(s) 206
BseLI CCNNNNNNNGG 3 cut(s) 680, 707, 724
BseMII CTCAG 1 cut(s) 720
BseNI ACTGG 1 cut(s) 42
BseRI GAGGAG 1 cut(s) 56
BseXI GCAGC 4 cut(s) 523, 592, 624, 736
BsgI GTGCAG 1 cut(s) 591
Bsh1236I CGCG 3 cut(s) 527, 720, 725
Bsh1285I CGRYCG 2 cut(s) 507, 729
BshFI GGCC 4 cut(s) 500, 520, 700, 711
BshVI ATCGAT 1 cut(s) 69
BsiEI CGRYCG 2 cut(s) 507, 729
BsiHKAI GWGCWC 1 cut(s) 377
BsiHKCI CYCGRG 2 cut(s) 245, 349
BsiSI CCGG 5 cut(s) 350, 522, 535, 546, 697
BslFI GGGAC 2 cut(s) 554, 702
BslI CCNNNNNNNGG 3 cut(s) 680, 707, 724
BsmAI GTCTC 1 cut(s) 28
BsmFI GGGAC 2 cut(s) 554, 702
BsnI GGCC 4 cut(s) 500, 520, 700, 711
BsoBI CYCGRG 2 cut(s) 245, 349
Bsp119I TTCGAA 1 cut(s) 417
Bsp1286I GDGCHC 1 cut(s) 377
Bsp143I GATC 3 cut(s) 4, 122, 504
BspANI GGCC 4 cut(s) 500, 520, 700, 711
BspCNI CTCAG 1 cut(s) 719
BspDI ATCGAT 1 cut(s) 69
BspFNI CGCG 3 cut(s) 527, 720, 725
BspMAI CTGCAG 1 cut(s) 627
BspMI ACCTGC 2 cut(s) 616, 624
BspPI GGATC 1 cut(s) 12
BspQI GCTCTTC 1 cut(s) 365
BspT104I TTCGAA 1 cut(s) 417
BsrI ACTGG 1 cut(s) 42
BssECI CCNNGG 3 cut(s) 349, 546, 723
BssMI GATC 3 cut(s) 4, 122, 504
BssNI GRCGYC 3 cut(s) 486, 543, 691
Bst4CI ACNGT 2 cut(s) 182, 594
Bst6I CTCTTC 1 cut(s) 365
BstACI GRCGYC 3 cut(s) 486, 543, 691
BstBI TTCGAA 1 cut(s) 417
BstC8I GCNNGC 5 cut(s) 361, 532, 654, 713, 747
BstDEI CTNAG 1 cut(s) 706
BstDSI CCRYGG 1 cut(s) 723
BstENI CCTNNNNNAGG 1 cut(s) 705
BstF5I GGATG 1 cut(s) 206
BstFNI CGCG 3 cut(s) 527, 720, 725
BstHHI GCGC 2 cut(s) 527, 722
BstKTI GATC 3 cut(s) 7, 125, 507
BstMAI GTCTC 1 cut(s) 28
BstMBI GATC 3 cut(s) 4, 122, 504
BstMCI CGRYCG 2 cut(s) 507, 729
BstMWI GCNNNNNNNGC 6 cut(s) 488, 497, 517, 531, 717, 731
BstNSI RCATGY 1 cut(s) 363
BstSCI CCNGG 4 cut(s) 348, 349, 520, 545
BstSFI CTRYAG 1 cut(s) 623
BstUI CGCG 3 cut(s) 527, 720, 725
BstV1I GCAGC 4 cut(s) 523, 592, 624, 736
BstX2I RGATCY 2 cut(s) 4, 122
BstYI RGATCY 2 cut(s) 4, 122
Bsu15I ATCGAT 1 cut(s) 69
Bsu36I CCTNAGG 1 cut(s) 706
BsuRI GGCC 4 cut(s) 500, 520, 700, 711
BsuTUI ATCGAT 1 cut(s) 69
BtgI CCRYGG 1 cut(s) 723
BtsCI GGATG 1 cut(s) 206
BtsIMutI CAGTG 1 cut(s) 187
BveI ACCTGC 2 cut(s) 616, 624
Cac8I GCNNGC 5 cut(s) 361, 532, 654, 713, 747
CaiI CAGNNNCTG 1 cut(s) 616
CfoI GCGC 2 cut(s) 527, 722
Cfr13I GGNCC 1 cut(s) 519
Cfr42I CCGCGG 1 cut(s) 726
Cfr9I CCCGGG 1 cut(s) 349
ClaI ATCGAT 1 cut(s) 69
CseI GACGC 3 cut(s) 551, 699, 741
Csp6I GTAC 3 cut(s) 111, 284, 325
CviAII CATG 2 cut(s) 16, 360
CviQI GTAC 3 cut(s) 111, 284, 325
DdeI CTNAG 1 cut(s) 706
DpnI GATC 3 cut(s) 6, 124, 506
DpnII GATC 3 cut(s) 4, 122, 504
Eam1104I CTCTTC 1 cut(s) 365
EarI CTCTTC 1 cut(s) 365
Ecl136II GAGCTC 1 cut(s) 375
Eco24I GRGCYC 1 cut(s) 377
Eco53kI GAGCTC 1 cut(s) 375
Eco81I CCTNAGG 1 cut(s) 706
Eco88I CYCGRG 2 cut(s) 245, 349
EcoICRI GAGCTC 1 cut(s) 375
EcoNI CCTNNNNNAGG 1 cut(s) 705
EcoT38I GRGCYC 1 cut(s) 377
FaeI CATG 2 cut(s) 19, 363
FaqI GGGAC 2 cut(s) 554, 702
FatI CATG 2 cut(s) 15, 359
FauI CCCGC 2 cut(s) 725, 750
Fnu4HI GCNGC 7 cut(s) 512, 528, 606, 638, 671, 723, 750
FokI GGATG 1 cut(s) 193
FriOI GRGCYC 1 cut(s) 377
Fsp4HI GCNGC 7 cut(s) 512, 528, 606, 638, 671, 723, 750
FspBI CTAG 1 cut(s) 642
GlaI GCGC 2 cut(s) 526, 721
GluI GCNGC 7 cut(s) 512, 528, 606, 638, 671, 723, 750
GsuI CTGGAG 1 cut(s) 59
HaeIII GGCC 4 cut(s) 500, 520, 700, 711
HapII CCGG 5 cut(s) 350, 522, 535, 546, 697
HgaI GACGC 3 cut(s) 551, 699, 741
HhaI GCGC 2 cut(s) 527, 722
Hin1I GRCGYC 3 cut(s) 486, 543, 691
Hin1II CATG 2 cut(s) 19, 363
Hin6I GCGC 2 cut(s) 525, 720
HinP1I GCGC 2 cut(s) 525, 720
HincII GTYRAC 2 cut(s) 82, 756
HindII GTYRAC 2 cut(s) 82, 756
HinfI GANTC 3 cut(s) 96, 250, 580
HpaII CCGG 5 cut(s) 350, 522, 535, 546, 697
HphI GGTGA 1 cut(s) 640
Hpy166II GTNNAC 5 cut(s) 82, 284, 327, 388, 756
Hpy188I TCNGA 1 cut(s) 259
Hpy188III TCNNGA 3 cut(s) 27, 247, 470
Hpy8I GTNNAC 5 cut(s) 82, 284, 327, 388, 756
Hpy99I CGWCG 4 cut(s) 491, 519, 588, 734
HpyAV CCTTC 1 cut(s) 504
HpyCH4III ACNGT 2 cut(s) 182, 594
HpyCH4IV ACGT 2 cut(s) 486, 758
HpyCH4V TGCA 6 cut(s) 66, 129, 465, 608, 619, 625
HpyF10VI GCNNNNNNNGC 6 cut(s) 488, 497, 517, 531, 717, 731
HpyF3I CTNAG 1 cut(s) 706
HpySE526I ACGT 2 cut(s) 486, 758
Hsp92I GRCGYC 3 cut(s) 486, 543, 691
Hsp92II CATG 2 cut(s) 19, 363
HspAI GCGC 2 cut(s) 525, 720
KspI CCGCGG 1 cut(s) 726
Kzo9I GATC 3 cut(s) 4, 122, 504
LguI GCTCTTC 1 cut(s) 365
LmnI GCTCC 1 cut(s) 496
Lsp1109I GCAGC 4 cut(s) 523, 592, 624, 736
LweI GCATC 1 cut(s) 75
MaeI CTAG 1 cut(s) 642
MaeII ACGT 2 cut(s) 486, 758
MalI GATC 3 cut(s) 6, 124, 506
MboI GATC 3 cut(s) 4, 122, 504
MboII GAAGA 3 cut(s) 185, 382, 431
MfeI CAATTG 1 cut(s) 460
MflI RGATCY 2 cut(s) 4, 122
MhlI GDGCHC 1 cut(s) 377
MluCI AATT 5 cut(s) 61, 272, 318, 330, 460
MlyI GAGTC 1 cut(s) 589
MmeI TCCRAC 1 cut(s) 429
MseI TTAA 1 cut(s) 333
MslI CAYNNNNRTG 1 cut(s) 180
MspA1I CMGCKG 1 cut(s) 725
MspI CCGG 5 cut(s) 350, 522, 535, 546, 697
MspR9I CCNGG 4 cut(s) 350, 351, 522, 547
MunI CAATTG 1 cut(s) 460
MvnI CGCG 3 cut(s) 527, 720, 725
MwoI GCNNNNNNNGC 6 cut(s) 488, 497, 517, 531, 717, 731
NciI CCSGG 4 cut(s) 350, 351, 522, 547
NdeII GATC 3 cut(s) 4, 122, 504
NlaIII CATG 2 cut(s) 19, 363
NspI RCATGY 1 cut(s) 363
NspV TTCGAA 1 cut(s) 417
PaeI GCATGC 1 cut(s) 363
PaeR7I CTCGAG 1 cut(s) 245
PaqCI CACCTGC 1 cut(s) 616
PciSI GCTCTTC 1 cut(s) 365
PfeI GAWTC 2 cut(s) 96, 250
PkrI GCNGC 7 cut(s) 513, 529, 607, 639, 672, 724, 751
Ple19I CGATCG 1 cut(s) 507
PleI GAGTC 1 cut(s) 588
PpsI GAGTC 1 cut(s) 588
Psp124BI GAGCTC 1 cut(s) 377
PspPI GGNCC 1 cut(s) 519
PstI CTGCAG 1 cut(s) 627
PstNI CAGNNNCTG 1 cut(s) 616
PsuI RGATCY 2 cut(s) 4, 122
PvuI CGATCG 1 cut(s) 507
RsaI GTAC 3 cut(s) 112, 285, 326
RsaNI GTAC 3 cut(s) 111, 284, 325
RseI CAYNNNNRTG 1 cut(s) 180
SacI GAGCTC 1 cut(s) 377
SacII CCGCGG 1 cut(s) 726
SapI GCTCTTC 1 cut(s) 365
SaqAI TTAA 1 cut(s) 333
SatI GCNGC 7 cut(s) 512, 528, 606, 638, 671, 723, 750
Sau3AI GATC 3 cut(s) 4, 122, 504
Sau96I GGNCC 1 cut(s) 519
SchI GAGTC 1 cut(s) 589
ScrFI CCNGG 4 cut(s) 350, 351, 522, 547
SduI GDGCHC 1 cut(s) 377
SfaNI GCATC 1 cut(s) 75
SfcI CTRYAG 1 cut(s) 623
Sfr274I CTCGAG 1 cut(s) 245
Sfr303I CCGCGG 1 cut(s) 726
SfuI TTCGAA 1 cut(s) 417
SgrBI CCGCGG 1 cut(s) 726
SlaI CTCGAG 1 cut(s) 245
SmaI CCCGGG 1 cut(s) 351
SmiMI CAYNNNNRTG 1 cut(s) 180
SmlI CTYRAG 3 cut(s) 224, 245, 468
SmoI CTYRAG 3 cut(s) 224, 245, 468
SphI GCATGC 1 cut(s) 363
Sse9I AATT 5 cut(s) 61, 272, 318, 330, 460
SspI AATATT 1 cut(s) 169
SspMI CTAG 1 cut(s) 642
SstI GAGCTC 1 cut(s) 377
StyD4I CCNGG 4 cut(s) 348, 349, 520, 545
TaaI ACNGT 2 cut(s) 182, 594
TaiI ACGT 2 cut(s) 489, 761
TaqI TCGA 8 cut(s) 69, 234, 246, 396, 417, 503, 507, 664
TasI AATT 5 cut(s) 61, 272, 318, 330, 460
TauI GCSGC 3 cut(s) 530, 673, 725
TfiI GAWTC 2 cut(s) 96, 250
Tru1I TTAA 1 cut(s) 333
Tru9I TTAA 1 cut(s) 333
TscAI CASTG 1 cut(s) 187
TseI GCWGC 4 cut(s) 511, 605, 637, 749
TspDTI ATGAA 2 cut(s) 164, 195
TspMI CCCGGG 1 cut(s) 349
TspRI CASTG 1 cut(s) 187
XagI CCTNNNNNAGG 1 cut(s) 705
XapI RAATTY 1 cut(s) 272
XceI RCATGY 1 cut(s) 363
XcmI CCANNNNNNNNNTGG 1 cut(s) 682
XhoI CTCGAG 1 cut(s) 245
XmaI CCCGGG 1 cut(s) 349
XspI CTAG 1 cut(s) 642
ZraI GACGTC 1 cut(s) 487
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.