Rw1G019530

F-box FBD LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
OG0000467
Physical Location & Seq
Reverse (-)
42642103 .. 42645355
3253 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G019530.1

Sequence Viewer

Length: 1185 bp
ATGAGTTCTTGTTTGCATGATTGTGTGAATTGGCTAGTGAATCAAAAAGTTGAAGAACTAGTACTCAAAGTTGGGTCAAGTGGTGGATTTGATTTGCCTCTTTGTGTATTTCAATGTGATTCATTGAGATGTCTAAAGTTGGATGCCCACATTTCATGGTTTGTATCTCCATCATTTTTGTCGGGAGCTACCAATGGTCTCGGTTCACTTCACACCTTGTCTCTAGCTCATGTGGATTTCTTGTTTAATTGTTTGTGTAAGGATTTGTTTACTGGTTCTTCATTCCCTTGTCTCGAGAGTTTGACCATTCAGAGTTGTAATGGAATGACTCATCTGAAAATTAGCTGTCCCAACCTGAAAGTTGTGCACGTGAATTCGATGAATATAAACAGCCTGGACATCTCCGGAATGAGACTGGAGAGTTTGCGAGTCTCGTTTTCTTTCTTCAGGTGTGACAGTGAAAGCTGGGTCAGCGTTTTCGCTCCAAATCTGAAAACTTTCTCTTGCTTGGCTAATTGCATTACTGAGAAATGTTTGATCCACGGCTTTCCTGCCCTGAAAACATCTCACATAAACTGTCGGTGTCCAGACGATCTTAGCATGGCGAAGATTCATAGTGCAGTAAATCTTGTTTGGGCATCATCCCAAGTTCAAAGCCTTGTCATATCCCGCGACTTTCTCCGGGTTTTATCAAAAATCTATCTTGAAGGTGGTGGTCAACTACATCCATTTGTTCAGCTTCAGACCTTGAAAATTCAGACTACTAGTCTGAACAGACATGATATTCCAGGTATAACTTGTCTATTCAAGAGCTCTCCAACTGTCCAGACCATCATAATTGAGATACTTGGTGATAGAGCAAGAGATAATGTTCAGAAATGGTTCGATGATTCGTTGGACAAGACTTATTGCACGGAAGTGCAATACTGGAAAAGTCAAGCTCAGGCTTTAAGTGACTTCCTATATCACCTGAAGGTAGCAATGATTCACGTCAAGGGATCCACGATCCATCAGTGTGTGGTTACTCTCGCCAGGTTTTTGCTTGAACATGGAAAAGGCTTGCAAGAAATGGTTCTAAGTTCCCAGCAGCTCAACTCCGACAATCTCTCTCTTTGGGAGAATCAAATAAGGTTACTAGATGGATTCCCTAGGGCATCTGCTGATGTCAGACTTGCAGTTGCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBD

Protein Analysis

394

Amino Acids

43.91

Weight (kDa)

7.18

Isoelectric Point (pI)

39.84

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000467)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g02550 FvH4_6g26921 FvH4_6g45630
malus_domestica MD01G1113200.v1.1 MD09G1101600.v1.1 MD17G1084600.v1.1
prunus_persica Prupe.3G224400_v2.0.a1 Prupe.3G224500_v2.0.a1 Prupe.3G224600_v2.0.a1
pyrus_communis pycom02g19930 pycom09g00760 pycom09g00770 pycom17g08170
rosa_chinensis RchiOBHm_Chr1g0350511 RchiOBHm_Chr2g0086171 RchiOBHm_Chr2g0117831 RchiOBHm_Chr3g0450391 RchiOBHm_Chr4g0409631 RchiOBHm_Chr5g0039731
rosa_laevigata RLG00000008538 RLG00000018375 RLG00000021415 RLG00000028481 RLG00000033926 RLG00000033937 RLG00000033938 RLG00000033939 RLG00000033941
rosa_multiflora Rmu_sc0000103.1_g000011 Rmu_sc0000330.1_g000009 Rmu_sc0000652.1_g000002 Rmu_sc0001507.1_g000017 Rmu_sc0004020.1_g000010 Rmu_sc0026676.1_g000001 Rmu_ssc0000083.1_g000022 Rmu_ssc0000400.1_g000021
rosa_roxburghii Rroxscaffold_1G00040760 Rroxscaffold_1G00041490 Rroxscaffold_1G00041500 Rroxscaffold_1G00041630 Rroxscaffold_2G00087990 Rroxscaffold_2G00126200 Rroxscaffold_4G00304800 Rroxscaffold_5G00354160 Rroxscaffold_5G00354170
rosa_rugosa Rorug01G0211500 Rorug02G0214300 Rorug02G0496800 Rorug02G0627700 Rorug04G0095600 Rorug05G0181700
rosa_samantha Rh1AG226300 Rh1BG194700 Rh1CG211100 Rh1DG222900 Rh2AG270500 Rh2AG270600 Rh2AG562900 Rh2AG563000 Rh2BG281900 Rh2BG282000 Rh2BG575700 Rh2CG269300 Rh2CG269400 Rh2DG278300 Rh2DG296200 Rh2DG585900 Rh3AG028000 Rh3AG028100 Rh3BG028500 Rh3BG028600 Rh3CG027300 Rh3CG027400 Rh3DG028400 Rh3DG028500 Rh4BG156800 Rh4CG167300 Rh4CG167400 Rh4DG151100 Rh5AG268000 Rh5BG272400 Rh5BG272500 Rh5CG304000 Rh5CG305000 Rh5CG305100 Rh5DG280500
rosa_wichuraiana Rw1G019530 Rw2G021370 Rw4G012860 Rw4G012970 Rw5G025070

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 672
AccIII TCCGGA 1 cut(s) 404
AciI CCGC 1 cut(s) 670
AclWI GGATC 4 cut(s) 532, 993, 1000, 1006
AcsI RAATTY 2 cut(s) 373, 753
AcuI CTGAAG 3 cut(s) 430, 725, 992
AcvI CACGTG 1 cut(s) 370
AfaI GTAC 1 cut(s) 63
AgsI TTSAA 7 cut(s) 53, 113, 653, 707, 751, 808, 1046
AhdI GACNNNNNGTC 1 cut(s) 765
AhlI ACTAGT 2 cut(s) 58, 764
AjiI CACGTC 1 cut(s) 991
AjnI CCWGG 3 cut(s) 393, 787, 1031
AleI CACNNNNGTG 1 cut(s) 917
AluBI AGCT 8 cut(s) 188, 227, 345, 465, 739, 813, 941, 1090
AluI AGCT 8 cut(s) 188, 227, 345, 465, 739, 813, 941, 1090
Alw21I GWGCWC 2 cut(s) 369, 815
Alw26I GTCTC 5 cut(s) 203, 225, 296, 406, 436
Alw44I GTGCAC 1 cut(s) 365
AlwI GGATC 4 cut(s) 532, 993, 1000, 1006
Ama87I CYCGRG 1 cut(s) 293
Aor13HI TCCGGA 1 cut(s) 404
ApaLI GTGCAC 1 cut(s) 365
ApeKI GCWGC 1 cut(s) 1087
ApoI RAATTY 2 cut(s) 373, 753
Asp700I GAANNNNTTC 3 cut(s) 497, 881, 1071
AspA2I CCTAGG 1 cut(s) 1148
AsuC2I CCSGG 1 cut(s) 683
AsuHPI GGTGA 2 cut(s) 863, 959
AvaI CYCGRG 1 cut(s) 293
AvrII CCTAGG 1 cut(s) 1148
BaeGI GKGCMC 1 cut(s) 369
BamHI GGATCC 1 cut(s) 998
BanII GRGCYC 1 cut(s) 815
BarI GAAGNNNNNNTAC 2 cut(s) 45, 77
BbrPI CACGTG 1 cut(s) 370
Bbv12I GWGCWC 2 cut(s) 369, 815
BbvI GCAGC 1 cut(s) 1099
BccI CCATC 4 cut(s) 178, 839, 1017, 1133
BceAI ACGGC 1 cut(s) 559
BciT130I CCWGG 3 cut(s) 395, 789, 1033
BcnI CCSGG 1 cut(s) 683
BcoDI GTCTC 5 cut(s) 203, 225, 296, 406, 436
BcuI ACTAGT 2 cut(s) 58, 764
BfaI CTAG 6 cut(s) 35, 59, 224, 765, 1136, 1149
BisI GCNGC 1 cut(s) 1088
BlnI CCTAGG 1 cut(s) 1148
BlsI GCNGC 1 cut(s) 1089
BmcAI AGTACT 1 cut(s) 63
Bme1390I CCNGG 4 cut(s) 395, 683, 789, 1033
BmeRI GACNNNNNGTC 1 cut(s) 765
BmeT110I CYCGRG 1 cut(s) 293
BmgBI CACGTC 1 cut(s) 991
BmiI GGNNCC 1 cut(s) 1000
BmrFI CCNGG 4 cut(s) 395, 683, 789, 1033
BmsI GCATC 3 cut(s) 133, 647, 1163
BpmI CTGGAG 1 cut(s) 437
Bpu10I CCTNAGC 1 cut(s) 942
BpuMI CCSGG 1 cut(s) 683
BsaAI YACGTR 1 cut(s) 370
BsaI GGTCTC 1 cut(s) 203
BsaJI CCNNGG 2 cut(s) 541, 1148
BsaWI WCCGGW 1 cut(s) 404
Bse1I ACTGG 3 cut(s) 277, 420, 932
Bse3DI GCAATG 1 cut(s) 987
BseAI TCCGGA 1 cut(s) 404
BseBI CCWGG 3 cut(s) 395, 789, 1033
BseDI CCNNGG 2 cut(s) 541, 1148
BseGI GGATG 3 cut(s) 148, 641, 724
BseMI GCAATG 1 cut(s) 987
BseMII CTCAG 2 cut(s) 516, 956
BseNI ACTGG 3 cut(s) 277, 420, 932
BseSI GKGCMC 1 cut(s) 369
BseXI GCAGC 1 cut(s) 1099
BseYI CCCAGC 2 cut(s) 465, 1083
BsgI GTGCAG 1 cut(s) 639
Bsh1236I CGCG 1 cut(s) 672
BsiHKAI GWGCWC 2 cut(s) 369, 815
BsiHKCI CYCGRG 1 cut(s) 293
BsiSI CCGG 2 cut(s) 405, 682
BslFI GGGAC 1 cut(s) 333
BsmAI GTCTC 5 cut(s) 203, 225, 296, 406, 436
BsmFI GGGAC 1 cut(s) 333
Bso31I GGTCTC 1 cut(s) 203
BsoBI CYCGRG 1 cut(s) 293
Bsp1286I GDGCHC 2 cut(s) 369, 815
Bsp13I TCCGGA 1 cut(s) 404
Bsp143I GATC 4 cut(s) 537, 592, 998, 1005
BspACI CCGC 1 cut(s) 670
BspCNI CTCAG 2 cut(s) 517, 955
BspEI TCCGGA 1 cut(s) 404
BspFNI CGCG 1 cut(s) 672
BspLI GGNNCC 1 cut(s) 1000
BspPI GGATC 4 cut(s) 532, 993, 1000, 1006
BspTNI GGTCTC 1 cut(s) 203
BsrDI GCAATG 1 cut(s) 987
BsrI ACTGG 3 cut(s) 277, 420, 932
BssECI CCNNGG 2 cut(s) 541, 1148
BssMI GATC 4 cut(s) 537, 592, 998, 1005
BssT1I CCWWGG 1 cut(s) 1148
Bst2UI CCWGG 3 cut(s) 395, 789, 1033
Bst4CI ACNGT 3 cut(s) 458, 578, 823
BstBAI YACGTR 1 cut(s) 370
BstC8I GCNNGC 1 cut(s) 1061
BstDEI CTNAG 4 cut(s) 525, 596, 942, 1076
BstDSI CCRYGG 1 cut(s) 541
BstF5I GGATG 3 cut(s) 148, 641, 724
BstFNI CGCG 1 cut(s) 672
BstKTI GATC 4 cut(s) 540, 595, 1001, 1008
BstMAI GTCTC 5 cut(s) 203, 225, 296, 406, 436
BstMBI GATC 4 cut(s) 537, 592, 998, 1005
BstMWI GCNNNNNNNGC 1 cut(s) 471
BstNI CCWGG 3 cut(s) 395, 789, 1033
BstSCI CCNGG 4 cut(s) 393, 681, 787, 1031
BstSLI GKGCMC 1 cut(s) 369
BstUI CGCG 1 cut(s) 672
BstV1I GCAGC 1 cut(s) 1099
BstX2I RGATCY 1 cut(s) 998
BstYI RGATCY 1 cut(s) 998
BtgI CCRYGG 1 cut(s) 541
BtrI CACGTC 1 cut(s) 991
BtsCI GGATG 3 cut(s) 148, 641, 724
BtsIMutI CAGTG 2 cut(s) 463, 1019
Cac8I GCNNGC 1 cut(s) 1061
Csp6I GTAC 1 cut(s) 62
CviAII CATG 6 cut(s) 17, 156, 230, 601, 779, 1049
CviQI GTAC 1 cut(s) 62
DdeI CTNAG 4 cut(s) 525, 596, 942, 1076
DpnI GATC 4 cut(s) 539, 594, 1000, 1007
DpnII GATC 4 cut(s) 537, 592, 998, 1005
DriI GACNNNNNGTC 1 cut(s) 765
Eam1105I GACNNNNNGTC 1 cut(s) 765
Ecl136II GAGCTC 1 cut(s) 813
Eco130I CCWWGG 1 cut(s) 1148
Eco24I GRGCYC 1 cut(s) 815
Eco31I GGTCTC 1 cut(s) 203
Eco53kI GAGCTC 1 cut(s) 813
Eco57I CTGAAG 3 cut(s) 430, 725, 992
Eco72I CACGTG 1 cut(s) 370
Eco88I CYCGRG 1 cut(s) 293
EcoICRI GAGCTC 1 cut(s) 813
EcoRI GAATTC 1 cut(s) 373
EcoRII CCWGG 3 cut(s) 393, 787, 1031
EcoT14I CCWWGG 1 cut(s) 1148
EcoT38I GRGCYC 1 cut(s) 815
ErhI CCWWGG 1 cut(s) 1148
FaeI CATG 6 cut(s) 20, 159, 233, 604, 782, 1052
FaqI GGGAC 1 cut(s) 333
FatI CATG 6 cut(s) 16, 155, 229, 600, 778, 1048
FauI CCCGC 1 cut(s) 677
Fnu4HI GCNGC 1 cut(s) 1088
FokI GGATG 3 cut(s) 155, 628, 711
FriOI GRGCYC 1 cut(s) 815
Fsp4HI GCNGC 1 cut(s) 1088
FspBI CTAG 6 cut(s) 35, 59, 224, 765, 1136, 1149
GluI GCNGC 1 cut(s) 1088
GsaI CCCAGC 2 cut(s) 469, 1087
GsuI CTGGAG 1 cut(s) 437
HapII CCGG 2 cut(s) 405, 682
Hin1II CATG 6 cut(s) 20, 159, 233, 604, 782, 1052
HincII GTYRAC 1 cut(s) 719
HindII GTYRAC 1 cut(s) 719
HinfI GANTC 9 cut(s) 40, 119, 328, 429, 610, 890, 985, 1120, 1143
HpaII CCGG 2 cut(s) 405, 682
HphI GGTGA 2 cut(s) 863, 959
Hpy166II GTNNAC 4 cut(s) 206, 270, 367, 719
Hpy188I TCNGA 9 cut(s) 312, 336, 492, 744, 759, 771, 876, 1099, 1169
Hpy188III TCNNGA 8 cut(s) 183, 293, 295, 405, 587, 704, 808, 826
Hpy8I GTNNAC 4 cut(s) 206, 270, 367, 719
HpyAV CCTTC 2 cut(s) 701, 967
HpyCH4III ACNGT 3 cut(s) 458, 578, 823
HpyCH4IV ACGT 2 cut(s) 369, 990
HpyCH4V TGCA 8 cut(s) 16, 367, 519, 620, 912, 922, 1063, 1175
HpyF10VI GCNNNNNNNGC 1 cut(s) 471
HpyF3I CTNAG 4 cut(s) 525, 596, 942, 1076
HpySE526I ACGT 2 cut(s) 369, 990
Hsp92II CATG 6 cut(s) 20, 159, 233, 604, 782, 1052
Kpn2I TCCGGA 1 cut(s) 404
Kzo9I GATC 4 cut(s) 537, 592, 998, 1005
LmnI GCTCC 2 cut(s) 185, 487
Lsp1109I GCAGC 1 cut(s) 1099
LweI GCATC 3 cut(s) 133, 647, 1163
MaeI CTAG 6 cut(s) 35, 59, 224, 765, 1136, 1149
MaeII ACGT 2 cut(s) 369, 990
MaeIII GTNAC 4 cut(s) 452, 953, 1021, 1131
MalI GATC 4 cut(s) 539, 594, 1000, 1007
MboI GATC 4 cut(s) 537, 592, 998, 1005
MboII GAAGA 4 cut(s) 65, 270, 436, 619
MflI RGATCY 1 cut(s) 998
MhlI GDGCHC 2 cut(s) 369, 815
MluCI AATT 7 cut(s) 28, 247, 339, 373, 514, 753, 837
MlyI GAGTC 2 cut(s) 322, 438
MmeI TCCRAC 4 cut(s) 120, 842, 876, 1122
MnlI CCTC 1 cut(s) 108
MroI TCCGGA 1 cut(s) 404
MroXI GAANNNNTTC 3 cut(s) 497, 881, 1071
MseI TTAA 3 cut(s) 246, 950, 1183
MslI CAYNNNNRTG 4 cut(s) 21, 127, 917, 1014
MspI CCGG 2 cut(s) 405, 682
MspR9I CCNGG 4 cut(s) 395, 683, 789, 1033
MvaI CCWGG 3 cut(s) 395, 789, 1033
MvnI CGCG 1 cut(s) 672
MwoI GCNNNNNNNGC 1 cut(s) 471
NciI CCSGG 1 cut(s) 683
NdeII GATC 4 cut(s) 537, 592, 998, 1005
NlaIII CATG 6 cut(s) 20, 159, 233, 604, 782, 1052
NlaIV GGNNCC 1 cut(s) 1000
NmuCI GTSAC 2 cut(s) 452, 953
OliI CACNNNNGTG 1 cut(s) 917
PaeR7I CTCGAG 1 cut(s) 293
PdmI GAANNNNTTC 3 cut(s) 497, 881, 1071
PfeI GAWTC 7 cut(s) 40, 119, 610, 890, 985, 1120, 1143
PkrI GCNGC 1 cut(s) 1089
PleI GAGTC 2 cut(s) 322, 437
PmaCI CACGTG 1 cut(s) 370
PmlI CACGTG 1 cut(s) 370
PpsI GAGTC 2 cut(s) 322, 437
Ppu21I YACGTR 1 cut(s) 370
Psp124BI GAGCTC 1 cut(s) 815
Psp6I CCWGG 3 cut(s) 393, 787, 1031
PspCI CACGTG 1 cut(s) 370
PspFI CCCAGC 2 cut(s) 465, 1083
PspGI CCWGG 3 cut(s) 393, 787, 1031
PspN4I GGNNCC 1 cut(s) 1000
PsuI RGATCY 1 cut(s) 998
RsaI GTAC 1 cut(s) 63
RsaNI GTAC 1 cut(s) 62
RseI CAYNNNNRTG 4 cut(s) 21, 127, 917, 1014
SacI GAGCTC 1 cut(s) 815
SaqAI TTAA 3 cut(s) 246, 950, 1183
SatI GCNGC 1 cut(s) 1088
Sau3AI GATC 4 cut(s) 537, 592, 998, 1005
ScaI AGTACT 1 cut(s) 63
SchI GAGTC 2 cut(s) 322, 438
ScrFI CCNGG 4 cut(s) 395, 683, 789, 1033
SduI GDGCHC 2 cut(s) 369, 815
SfaNI GCATC 3 cut(s) 133, 647, 1163
Sfr274I CTCGAG 1 cut(s) 293
SlaI CTCGAG 1 cut(s) 293
SmiMI CAYNNNNRTG 4 cut(s) 21, 127, 917, 1014
SmlI CTYRAG 1 cut(s) 293
SmoI CTYRAG 1 cut(s) 293
SpeI ACTAGT 2 cut(s) 58, 764
Sse9I AATT 7 cut(s) 28, 247, 339, 373, 514, 753, 837
SsiI CCGC 1 cut(s) 670
SspMI CTAG 6 cut(s) 35, 59, 224, 765, 1136, 1149
SstI GAGCTC 1 cut(s) 815
StyD4I CCNGG 4 cut(s) 393, 681, 787, 1031
StyI CCWWGG 1 cut(s) 1148
TaaI ACNGT 3 cut(s) 458, 578, 823
TaiI ACGT 2 cut(s) 372, 993
TaqI TCGA 3 cut(s) 294, 377, 885
TasI AATT 7 cut(s) 28, 247, 339, 373, 514, 753, 837
TatI WGTACW 1 cut(s) 61
TfiI GAWTC 7 cut(s) 40, 119, 610, 890, 985, 1120, 1143
Tru1I TTAA 3 cut(s) 246, 950, 1183
Tru9I TTAA 3 cut(s) 246, 950, 1183
TscAI CASTG 2 cut(s) 463, 1019
TseFI GTSAC 2 cut(s) 452, 953
TseI GCWGC 1 cut(s) 1087
Tsp45I GTSAC 2 cut(s) 452, 953
TspDTI ATGAA 5 cut(s) 111, 144, 270, 395, 602
TspGWI ACGGA 1 cut(s) 929
TspRI CASTG 2 cut(s) 463, 1019
VneI GTGCAC 1 cut(s) 365
XapI RAATTY 2 cut(s) 373, 753
XhoI CTCGAG 1 cut(s) 293
XmaJI CCTAGG 1 cut(s) 1148
XmnI GAANNNNTTC 3 cut(s) 497, 881, 1071
XspI CTAG 6 cut(s) 35, 59, 224, 765, 1136, 1149
ZrmI AGTACT 1 cut(s) 63
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.