Rh2AG563000

F-box FBD LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0000467
Physical Location & Seq
Forward (+)
79233793 .. 79234260
468 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG563000.1

Sequence Viewer

Length: 468 bp
ATGATTTTTCAGAAGTGGAACAACATTTTGTTGGATGATTCCAATTGCACGGAAGAGCAGTTCTGGGAAACTCAGGCTCAAAATTTTAGTCCCTTTCTTAGTCACTTAAAGGTGGCCAACATTGAAGTTGGTAAGAACGCGATCAATTTTGCAAAGTTTTTGCTTAAATATGGAAGAGGCCTACAAGAAGTGATTCTCAGTTTTAGGGAAGGCAGAAGTACCCTGCTTCCCAATTCGTTGAATGATACCATTGATTTATTAAAGGGATTCCCCCGAGCATCTGCATATGTCAAATTCTCAACTTCTTGCTCTTCACCGTATCAGATAATTTGCTTAATTTCAGGTACCATCTTATTAAGGAATACATTCAAGTTAATTTGTCAGCCAATGTATTGCAACTTTCTTCAACCCTTTTGCCTACTTCTGTCATCTATCAGAAATGAGAAGGGTGCCATCATAGACATATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBD

Protein Analysis

155

Amino Acids

17.67

Weight (kDa)

8.55

Isoelectric Point (pI)

49.22

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000467)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g02550 FvH4_6g26921 FvH4_6g45630
malus_domestica MD01G1113200.v1.1 MD09G1101600.v1.1 MD17G1084600.v1.1
prunus_persica Prupe.3G224400_v2.0.a1 Prupe.3G224500_v2.0.a1 Prupe.3G224600_v2.0.a1
pyrus_communis pycom02g19930 pycom09g00760 pycom09g00770 pycom17g08170
rosa_chinensis RchiOBHm_Chr1g0350511 RchiOBHm_Chr2g0086171 RchiOBHm_Chr2g0117831 RchiOBHm_Chr3g0450391 RchiOBHm_Chr4g0409631 RchiOBHm_Chr5g0039731
rosa_laevigata RLG00000008538 RLG00000018375 RLG00000021415 RLG00000028481 RLG00000033926 RLG00000033937 RLG00000033938 RLG00000033939 RLG00000033941
rosa_multiflora Rmu_sc0000103.1_g000011 Rmu_sc0000330.1_g000009 Rmu_sc0000652.1_g000002 Rmu_sc0001507.1_g000017 Rmu_sc0004020.1_g000010 Rmu_sc0026676.1_g000001 Rmu_ssc0000083.1_g000022 Rmu_ssc0000400.1_g000021
rosa_roxburghii Rroxscaffold_1G00040760 Rroxscaffold_1G00041490 Rroxscaffold_1G00041500 Rroxscaffold_1G00041630 Rroxscaffold_2G00087990 Rroxscaffold_2G00126200 Rroxscaffold_4G00304800 Rroxscaffold_5G00354160 Rroxscaffold_5G00354170
rosa_rugosa Rorug01G0211500 Rorug02G0214300 Rorug02G0496800 Rorug02G0627700 Rorug04G0095600 Rorug05G0181700
rosa_samantha Rh1AG226300 Rh1BG194700 Rh1CG211100 Rh1DG222900 Rh2AG270500 Rh2AG270600 Rh2AG562900 Rh2AG563000 Rh2BG281900 Rh2BG282000 Rh2BG575700 Rh2CG269300 Rh2CG269400 Rh2DG278300 Rh2DG296200 Rh2DG585900 Rh3AG028000 Rh3AG028100 Rh3BG028500 Rh3BG028600 Rh3CG027300 Rh3CG027400 Rh3DG028400 Rh3DG028500 Rh4BG156800 Rh4CG167300 Rh4CG167400 Rh4DG151100 Rh5AG268000 Rh5BG272400 Rh5BG272500 Rh5CG304000 Rh5CG305000 Rh5CG305100 Rh5DG280500
rosa_wichuraiana Rw1G019530 Rw2G021370 Rw4G012860 Rw4G012970 Rw5G025070

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 344
AccB1I GGYRCC 2 cut(s) 344, 449
AccII CGCG 1 cut(s) 140
AcoI YGGCCR 1 cut(s) 114
AcsI RAATTY 2 cut(s) 82, 293
AfaI GTAC 2 cut(s) 220, 346
AgsI TTSAA 4 cut(s) 125, 241, 370, 407
AloI GAACNNNNNNTCC 2 cut(s) 44, 76
Ama87I CYCGRG 1 cut(s) 273
AoxI GGCC 2 cut(s) 114, 178
ApoI RAATTY 2 cut(s) 82, 293
ArsI GACNNNNNNTTYG 2 cut(s) 73, 105
Asp700I GAANNNNTTC 2 cut(s) 192, 365
Asp718I GGTACC 1 cut(s) 344
AsuHPI GGTGA 1 cut(s) 306
AvaI CYCGRG 1 cut(s) 273
BalI TGGCCA 1 cut(s) 116
BanI GGYRCC 2 cut(s) 344, 449
BccI CCATC 2 cut(s) 356, 461
BmeT110I CYCGRG 1 cut(s) 273
BmiI GGNNCC 2 cut(s) 346, 451
BmsI GCATC 1 cut(s) 287
BseGI GGATG 1 cut(s) 40
BseMII CTCAG 2 cut(s) 86, 211
Bsh1236I CGCG 1 cut(s) 140
BshFI GGCC 2 cut(s) 116, 180
BshNI GGYRCC 2 cut(s) 344, 449
BsiHKCI CYCGRG 1 cut(s) 273
BslFI GGGAC 1 cut(s) 75
BsmFI GGGAC 1 cut(s) 75
BsnI GGCC 2 cut(s) 116, 180
BsoBI CYCGRG 1 cut(s) 273
Bsp143I GATC 1 cut(s) 141
BspANI GGCC 2 cut(s) 116, 180
BspCNI CTCAG 2 cut(s) 85, 210
BspFNI CGCG 1 cut(s) 140
BspLI GGNNCC 2 cut(s) 346, 451
BspQI GCTCTTC 2 cut(s) 48, 316
BspT107I GGYRCC 2 cut(s) 344, 449
BssMI GATC 1 cut(s) 141
Bst4CI ACNGT 1 cut(s) 318
Bst6I CTCTTC 3 cut(s) 48, 169, 316
BstDEI CTNAG 3 cut(s) 72, 98, 197
BstF5I GGATG 1 cut(s) 40
BstFNI CGCG 1 cut(s) 140
BstKTI GATC 1 cut(s) 144
BstMBI GATC 1 cut(s) 141
BstUI CGCG 1 cut(s) 140
BsuRI GGCC 2 cut(s) 116, 180
BtsCI GGATG 1 cut(s) 40
Csp6I GTAC 2 cut(s) 219, 345
CviJI RGCY 4 cut(s) 77, 116, 180, 385
CviKI_1 RGCY 4 cut(s) 77, 116, 180, 385
CviQI GTAC 2 cut(s) 219, 345
DdeI CTNAG 3 cut(s) 72, 98, 197
DpnI GATC 1 cut(s) 143
DpnII GATC 1 cut(s) 141
EaeI YGGCCR 1 cut(s) 114
Eam1104I CTCTTC 3 cut(s) 48, 169, 316
EarI CTCTTC 3 cut(s) 48, 169, 316
Eco147I AGGCCT 1 cut(s) 180
Eco88I CYCGRG 1 cut(s) 273
FaiI YATR 6 cut(s) 171, 286, 288, 458, 464, 466
FaqI GGGAC 1 cut(s) 75
FauNDI CATATG 2 cut(s) 286, 464
FokI GGATG 1 cut(s) 47
HaeIII GGCC 2 cut(s) 116, 180
HinfI GANTC 3 cut(s) 38, 193, 267
HphI GGTGA 1 cut(s) 306
Hpy188I TCNGA 3 cut(s) 12, 324, 437
HpyAV CCTTC 2 cut(s) 203, 439
HpyCH4III ACNGT 1 cut(s) 318
HpyCH4V TGCA 4 cut(s) 48, 152, 284, 396
HpyF3I CTNAG 3 cut(s) 72, 98, 197
KpnI GGTACC 1 cut(s) 348
Kzo9I GATC 1 cut(s) 141
LguI GCTCTTC 2 cut(s) 48, 316
LpnPI CCDG 4 cut(s) 49, 59, 236, 327
LweI GCATC 1 cut(s) 287
MaeIII GTNAC 1 cut(s) 101
MalI GATC 1 cut(s) 143
MboI GATC 1 cut(s) 141
MboII GAAGA 4 cut(s) 65, 186, 303, 395
MfeI CAATTG 1 cut(s) 43
MlsI TGGCCA 1 cut(s) 116
MluCI AATT 8 cut(s) 43, 82, 145, 232, 293, 327, 336, 375
MluNI TGGCCA 1 cut(s) 116
MmeI TCCRAC 1 cut(s) 12
MnlI CCTC 1 cut(s) 170
Mox20I TGGCCA 1 cut(s) 116
MroXI GAANNNNTTC 2 cut(s) 192, 365
MscI TGGCCA 1 cut(s) 116
MseI TTAA 6 cut(s) 107, 165, 260, 335, 356, 374
Msp20I TGGCCA 1 cut(s) 116
MunI CAATTG 1 cut(s) 43
MvnI CGCG 1 cut(s) 140
NdeI CATATG 2 cut(s) 286, 464
NdeII GATC 1 cut(s) 141
NlaIV GGNNCC 2 cut(s) 346, 451
NmuCI GTSAC 1 cut(s) 101
PceI AGGCCT 1 cut(s) 180
PciSI GCTCTTC 2 cut(s) 48, 316
PdmI GAANNNNTTC 2 cut(s) 192, 365
PfeI GAWTC 3 cut(s) 38, 193, 267
PspN4I GGNNCC 2 cut(s) 346, 451
RsaI GTAC 2 cut(s) 220, 346
RsaNI GTAC 2 cut(s) 219, 345
SapI GCTCTTC 2 cut(s) 48, 316
SaqAI TTAA 6 cut(s) 107, 165, 260, 335, 356, 374
Sau3AI GATC 1 cut(s) 141
SetI ASST 2 cut(s) 114, 346
SfaNI GCATC 1 cut(s) 287
Sse9I AATT 8 cut(s) 43, 82, 145, 232, 293, 327, 336, 375
SseBI AGGCCT 1 cut(s) 180
StuI AGGCCT 1 cut(s) 180
TaaI ACNGT 1 cut(s) 318
TasI AATT 8 cut(s) 43, 82, 145, 232, 293, 327, 336, 375
TfiI GAWTC 3 cut(s) 38, 193, 267
Tru1I TTAA 6 cut(s) 107, 165, 260, 335, 356, 374
Tru9I TTAA 6 cut(s) 107, 165, 260, 335, 356, 374
TseFI GTSAC 1 cut(s) 101
Tsp45I GTSAC 1 cut(s) 101
TspGWI ACGGA 1 cut(s) 65
XapI RAATTY 2 cut(s) 82, 293
XmnI GAANNNNTTC 2 cut(s) 192, 365
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.