Rh5BG272500

F-box FBD LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
OG0000467
Physical Location & Seq
Reverse (-)
34207752 .. 34208572
821 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG272500.1

Sequence Viewer

Length: 678 bp
ATGGGAAACTGTTTCACTCATAAAGAAAAAGCTTCAGATCGGTGGATCCGGGAGGAGGAGGAAGAAAACAAACACCATGAGCAGCGAAACAGAATCAGCGATCCCTCAGATCAGTGCACTGATGCTCCGGCTGACAGAATCAGCGGTGATCTTTCAGATCGGTGGAGTGAGGAGGAAGAAAACAAGCATGAGAAGAGAAACAGTACTGGTTCATCTGACAGAATCAGTGATCTCCCAGATGATATGTTGCATCTCATACTCTCATTCTTGCCTTTCAAATACGTTGGGCAAACTAGTGTCTTATCTCGAAGATGGAGTCATGTATGGTCTTCCTATCCCATCTTTGACTTCTACGAGATTTTTACTGGTATTGAAGCTGAACATCACCAGACAAGAGCAAGCATCATCAACACGGTATTGGCACGCGATCGTCACAACGAAAACTATAACATGATGTACCCATGCCAAAAAATTCCCTTGCCAAGCGGCAGACTAGGTCAATTTCGTATAGTTGGGGAGAATCCAAACAATTCTTGTTTGGCTAGGGTTGAGGAACTTGTACTCGATATCTCGTTGAGTAGTGCAAATACATCTAATTTGCCTCGATGTCAACTTAAGTGCCACTCATTAACGAGTAGTAGCTGTGGGAGTTCAAAGGCATGGCTAGGAGCGGTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBD

Protein Analysis

225

Amino Acids

25.77

Weight (kDa)

5.8

Isoelectric Point (pI)

58.31

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 75 - 114 4.3e-10 F-box domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000467)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g02550 FvH4_6g26921 FvH4_6g45630
malus_domestica MD01G1113200.v1.1 MD09G1101600.v1.1 MD17G1084600.v1.1
prunus_persica Prupe.3G224400_v2.0.a1 Prupe.3G224500_v2.0.a1 Prupe.3G224600_v2.0.a1
pyrus_communis pycom02g19930 pycom09g00760 pycom09g00770 pycom17g08170
rosa_chinensis RchiOBHm_Chr1g0350511 RchiOBHm_Chr2g0086171 RchiOBHm_Chr2g0117831 RchiOBHm_Chr3g0450391 RchiOBHm_Chr4g0409631 RchiOBHm_Chr5g0039731
rosa_laevigata RLG00000008538 RLG00000018375 RLG00000021415 RLG00000028481 RLG00000033926 RLG00000033937 RLG00000033938 RLG00000033939 RLG00000033941
rosa_multiflora Rmu_sc0000103.1_g000011 Rmu_sc0000330.1_g000009 Rmu_sc0000652.1_g000002 Rmu_sc0001507.1_g000017 Rmu_sc0004020.1_g000010 Rmu_sc0026676.1_g000001 Rmu_ssc0000083.1_g000022 Rmu_ssc0000400.1_g000021
rosa_roxburghii Rroxscaffold_1G00040760 Rroxscaffold_1G00041490 Rroxscaffold_1G00041500 Rroxscaffold_1G00041630 Rroxscaffold_2G00087990 Rroxscaffold_2G00126200 Rroxscaffold_4G00304800 Rroxscaffold_5G00354160 Rroxscaffold_5G00354170
rosa_rugosa Rorug01G0211500 Rorug02G0214300 Rorug02G0496800 Rorug02G0627700 Rorug04G0095600 Rorug05G0181700
rosa_samantha Rh1AG226300 Rh1BG194700 Rh1CG211100 Rh1DG222900 Rh2AG270500 Rh2AG270600 Rh2AG562900 Rh2AG563000 Rh2BG281900 Rh2BG282000 Rh2BG575700 Rh2CG269300 Rh2CG269400 Rh2DG278300 Rh2DG296200 Rh2DG585900 Rh3AG028000 Rh3AG028100 Rh3BG028500 Rh3BG028600 Rh3CG027300 Rh3CG027400 Rh3DG028400 Rh3DG028500 Rh4BG156800 Rh4CG167300 Rh4CG167400 Rh4DG151100 Rh5AG268000 Rh5BG272400 Rh5BG272500 Rh5CG304000 Rh5CG305000 Rh5CG305100 Rh5DG280500
rosa_wichuraiana Rw1G019530 Rw2G021370 Rw4G012860 Rw4G012970 Rw5G025070

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 671
AccII CGCG 1 cut(s) 426
AciI CCGC 3 cut(s) 144, 486, 671
AclWI GGATC 3 cut(s) 40, 53, 95
AcsI RAATTY 1 cut(s) 471
AcuI CTGAAG 1 cut(s) 18
AfaI GTAC 3 cut(s) 205, 458, 561
AfiI CCNNNNNNNGG 1 cut(s) 55
AflII CTTAAG 1 cut(s) 614
AgsI TTSAA 3 cut(s) 277, 374, 654
AhlI ACTAGT 1 cut(s) 293
AluBI AGCT 3 cut(s) 32, 377, 642
AluI AGCT 3 cut(s) 32, 377, 642
Alw21I GWGCWC 1 cut(s) 119
Alw44I GTGCAC 1 cut(s) 115
AlwI GGATC 3 cut(s) 40, 53, 95
ApaLI GTGCAC 1 cut(s) 115
ApeKI GCWGC 1 cut(s) 82
ApoI RAATTY 1 cut(s) 471
ArsI GACNNNNNNTTYG 2 cut(s) 301, 333
AsuC2I CCSGG 1 cut(s) 50
AsuHPI GGTGA 2 cut(s) 158, 377
BaeGI GKGCMC 1 cut(s) 119
BamHI GGATCC 1 cut(s) 45
BbsI GAAGAC 1 cut(s) 321
Bbv12I GWGCWC 1 cut(s) 119
BbvI GCAGC 1 cut(s) 94
BccI CCATC 2 cut(s) 306, 347
BcnI CCSGG 1 cut(s) 50
BcuI ACTAGT 1 cut(s) 293
BfaI CTAG 4 cut(s) 294, 494, 543, 665
BfrI CTTAAG 1 cut(s) 614
BisI GCNGC 2 cut(s) 83, 487
BlsI GCNGC 2 cut(s) 84, 488
BmcAI AGTACT 1 cut(s) 205
Bme1390I CCNGG 1 cut(s) 50
BmiI GGNNCC 1 cut(s) 47
BmrFI CCNGG 1 cut(s) 50
BmsI GCATC 3 cut(s) 112, 259, 411
BpiI GAAGAC 1 cut(s) 321
BpuMI CCSGG 1 cut(s) 50
BsaXI ACNNNNNCTCC 2 cut(s) 109, 139
Bsc4I CCNNNNNNNGG 1 cut(s) 55
Bse1I ACTGG 2 cut(s) 211, 370
BseLI CCNNNNNNNGG 1 cut(s) 55
BseMII CTCAG 1 cut(s) 120
BseNI ACTGG 2 cut(s) 211, 370
BseRI GAGGAG 3 cut(s) 68, 71, 185
BseSI GKGCMC 1 cut(s) 119
BseXI GCAGC 1 cut(s) 94
Bsh1236I CGCG 1 cut(s) 426
Bsh1285I CGRYCG 1 cut(s) 430
BsiEI CGRYCG 1 cut(s) 430
BsiHKAI GWGCWC 1 cut(s) 119
BsiSI CCGG 2 cut(s) 49, 128
BslI CCNNNNNNNGG 1 cut(s) 55
Bsp1286I GDGCHC 1 cut(s) 119
Bsp143I GATC 8 cut(s) 37, 45, 100, 109, 148, 157, 229, 427
BspACI CCGC 3 cut(s) 144, 486, 671
BspCNI CTCAG 1 cut(s) 119
BspFNI CGCG 1 cut(s) 426
BspLI GGNNCC 1 cut(s) 47
BspPI GGATC 3 cut(s) 40, 53, 95
BspTI CTTAAG 1 cut(s) 614
BsrBI CCGCTC 1 cut(s) 671
BsrI ACTGG 2 cut(s) 211, 370
BssMI GATC 8 cut(s) 37, 45, 100, 109, 148, 157, 229, 427
Bst4CI ACNGT 3 cut(s) 11, 203, 415
Bst6I CTCTTC 1 cut(s) 188
BstAFI CTTAAG 1 cut(s) 614
BstC8I GCNNGC 2 cut(s) 400, 424
BstDEI CTNAG 1 cut(s) 106
BstFNI CGCG 1 cut(s) 426
BstKTI GATC 8 cut(s) 40, 48, 103, 112, 151, 160, 232, 430
BstMBI GATC 8 cut(s) 37, 45, 100, 109, 148, 157, 229, 427
BstMCI CGRYCG 1 cut(s) 430
BstSCI CCNGG 1 cut(s) 48
BstSLI GKGCMC 1 cut(s) 119
BstUI CGCG 1 cut(s) 426
BstV1I GCAGC 1 cut(s) 94
BstV2I GAAGAC 1 cut(s) 321
BstX2I RGATCY 1 cut(s) 45
BstYI RGATCY 1 cut(s) 45
BtsIMutI CAGTG 3 cut(s) 117, 119, 232
Cac8I GCNNGC 2 cut(s) 400, 424
Csp6I GTAC 3 cut(s) 204, 457, 560
CviAII CATG 6 cut(s) 77, 188, 320, 451, 462, 660
CviJI RGCY 6 cut(s) 32, 131, 377, 542, 642, 664
CviKI_1 RGCY 6 cut(s) 32, 131, 377, 542, 642, 664
CviQI GTAC 3 cut(s) 204, 457, 560
DdeI CTNAG 1 cut(s) 106
DpnI GATC 8 cut(s) 39, 47, 102, 111, 150, 159, 231, 429
DpnII GATC 8 cut(s) 37, 45, 100, 109, 148, 157, 229, 427
Eam1104I CTCTTC 1 cut(s) 188
EarI CTCTTC 1 cut(s) 188
Eco32I GATATC 1 cut(s) 568
Eco57I CTGAAG 1 cut(s) 18
EcoRV GATATC 1 cut(s) 568
FaeI CATG 6 cut(s) 80, 191, 323, 454, 465, 663
FatI CATG 6 cut(s) 76, 187, 319, 450, 461, 659
Fnu4HI GCNGC 2 cut(s) 83, 487
Fsp4HI GCNGC 2 cut(s) 83, 487
FspBI CTAG 4 cut(s) 294, 494, 543, 665
GluI GCNGC 2 cut(s) 83, 487
HapII CCGG 2 cut(s) 49, 128
Hin1II CATG 6 cut(s) 80, 191, 323, 454, 465, 663
HincII GTYRAC 1 cut(s) 611
HindII GTYRAC 1 cut(s) 611
HindIII AAGCTT 1 cut(s) 30
HinfI GANTC 5 cut(s) 93, 138, 222, 316, 520
HpaII CCGG 2 cut(s) 49, 128
HphI GGTGA 2 cut(s) 158, 377
Hpy166II GTNNAC 2 cut(s) 117, 611
Hpy188I TCNGA 4 cut(s) 37, 109, 157, 217
Hpy188III TCNNGA 1 cut(s) 306
Hpy8I GTNNAC 2 cut(s) 117, 611
HpyCH4III ACNGT 3 cut(s) 11, 203, 415
HpyCH4IV ACGT 1 cut(s) 282
HpyCH4V TGCA 3 cut(s) 117, 250, 584
HpyF3I CTNAG 1 cut(s) 106
HpySE526I ACGT 1 cut(s) 282
Hsp92II CATG 6 cut(s) 80, 191, 323, 454, 465, 663
Kzo9I GATC 8 cut(s) 37, 45, 100, 109, 148, 157, 229, 427
LmnI GCTCC 2 cut(s) 130, 668
LpnPI CCDG 6 cut(s) 62, 141, 192, 249, 351, 401
Lsp1109I GCAGC 1 cut(s) 94
LweI GCATC 3 cut(s) 112, 259, 411
MaeI CTAG 4 cut(s) 294, 494, 543, 665
MaeII ACGT 1 cut(s) 282
MaeIII GTNAC 1 cut(s) 431
MalI GATC 8 cut(s) 39, 47, 102, 111, 150, 159, 231, 429
MbiI CCGCTC 1 cut(s) 671
MboI GATC 8 cut(s) 37, 45, 100, 109, 148, 157, 229, 427
MboII GAAGA 5 cut(s) 74, 188, 205, 321, 321
MflI RGATCY 1 cut(s) 45
MhlI GDGCHC 1 cut(s) 119
MluCI AATT 4 cut(s) 471, 500, 529, 595
MlyI GAGTC 1 cut(s) 325
MnlI CCTC 8 cut(s) 46, 49, 52, 115, 163, 166, 544, 612
MseI TTAA 2 cut(s) 615, 629
MspA1I CMGCKG 1 cut(s) 144
MspCI CTTAAG 1 cut(s) 614
MspI CCGG 2 cut(s) 49, 128
MspR9I CCNGG 1 cut(s) 50
MvnI CGCG 1 cut(s) 426
NciI CCSGG 1 cut(s) 50
NdeII GATC 8 cut(s) 37, 45, 100, 109, 148, 157, 229, 427
NlaIII CATG 6 cut(s) 80, 191, 323, 454, 465, 663
NlaIV GGNNCC 1 cut(s) 47
NmuCI GTSAC 1 cut(s) 431
PfeI GAWTC 4 cut(s) 93, 138, 222, 520
PflFI GACNNNGTC 1 cut(s) 495
PfoI TCCNGGA 1 cut(s) 48
PkrI GCNGC 2 cut(s) 84, 488
Ple19I CGATCG 1 cut(s) 430
PleI GAGTC 1 cut(s) 324
PpsI GAGTC 1 cut(s) 324
PspN4I GGNNCC 1 cut(s) 47
PsuI RGATCY 1 cut(s) 45
PsyI GACNNNGTC 1 cut(s) 495
PvuI CGATCG 1 cut(s) 430
RsaI GTAC 3 cut(s) 205, 458, 561
RsaNI GTAC 3 cut(s) 204, 457, 560
SaqAI TTAA 2 cut(s) 615, 629
SatI GCNGC 2 cut(s) 83, 487
Sau3AI GATC 8 cut(s) 37, 45, 100, 109, 148, 157, 229, 427
ScaI AGTACT 1 cut(s) 205
SchI GAGTC 1 cut(s) 325
ScrFI CCNGG 1 cut(s) 50
SduI GDGCHC 1 cut(s) 119
SetI ASST 5 cut(s) 34, 285, 379, 499, 644
SfaNI GCATC 3 cut(s) 112, 259, 411
SmlI CTYRAG 1 cut(s) 614
SmoI CTYRAG 1 cut(s) 614
SpeI ACTAGT 1 cut(s) 293
Sse9I AATT 4 cut(s) 471, 500, 529, 595
SsiI CCGC 3 cut(s) 144, 486, 671
SspMI CTAG 4 cut(s) 294, 494, 543, 665
StyD4I CCNGG 1 cut(s) 48
TaaI ACNGT 3 cut(s) 11, 203, 415
TaiI ACGT 1 cut(s) 285
TaqI TCGA 3 cut(s) 307, 564, 604
TasI AATT 4 cut(s) 471, 500, 529, 595
TatI WGTACW 2 cut(s) 203, 559
TauI GCSGC 1 cut(s) 489
TfiI GAWTC 4 cut(s) 93, 138, 222, 520
Tru1I TTAA 2 cut(s) 615, 629
Tru9I TTAA 2 cut(s) 615, 629
TscAI CASTG 3 cut(s) 119, 124, 232
TseFI GTSAC 1 cut(s) 431
TseI GCWGC 1 cut(s) 82
Tsp45I GTSAC 1 cut(s) 431
TspDTI ATGAA 1 cut(s) 201
TspRI CASTG 3 cut(s) 119, 124, 232
Tth111I GACNNNGTC 1 cut(s) 495
Vha464I CTTAAG 1 cut(s) 614
VneI GTGCAC 1 cut(s) 115
XapI RAATTY 1 cut(s) 471
XspI CTAG 4 cut(s) 294, 494, 543, 665
ZrmI AGTACT 1 cut(s) 205
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.