Prupe.3G224400_v2.0.a1

F-box FBD LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
OG0000467
Physical Location & Seq
Forward (+)
22386884 .. 22388508
1625 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G224400.1

Sequence Viewer

Length: 768 bp
ATGAGACTAGAGACCTTCAAATTCACCCAGTGTTTCGGAGAATGCTGTTTTAACATTTTTGCTCCCAATCTACAGAGTTTTTATTGGGCAAGTAACAACTTTGCTGGGAAATGTTTGATCCAGAGCTTTCTGATCCTCCGGAAAGCTGACATATATTATCCGTTCACTGTCAAAGGAATTAAGATTCATAGTACAGTAAATCTTTTTTCCGCAATCTCCCAAGTTCAAAACCTTAGGCTATCCTTTGAAATTTTTGAGATTTTATCAAAAAGATATTTTGAATTCGGTGGTCTGCCACCATGTTCATTTATAAACCTCAAGAGCTTACAAATTGATACAAGTTGGAGCAAATCTTACATCCCAGGTATAGCATGCTTATTCAAGAGTTCTCCAGTAGTCCACACTCTTGGAATTGAGATAAAGTCTTATTGCGCGCCAGACAATAAATGGAACAACAATTTGTTGGACAATGGCCACTGCACTAAAGAGCAATTCTGGGATGCTGAAGCTCAAACTCTGAGTCCCTTCCTATGCCACCTGAAGGTGGTGAAGATTAGGGTTTTCCAAAAGATGGGGCATGAGGGTGTGATTAGCATAGCAAGTTTCTTGCTTGAACATGGAAAGAACTTGCAGGAAATGATTATCATTACTCCGAAGTACTACAAAGCCTCTGATGTAGCAGCTTGGAAGGATAAGATTGGTATAATAGAGGGACTCTCTCGGGGATCAACTGATGTCAAAACCTCATACTTAACTGCTGATATGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBD

Protein Analysis

256

Amino Acids

29.02

Weight (kDa)

8.77

Isoelectric Point (pI)

41.49

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000467)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g02550 FvH4_6g26921 FvH4_6g45630
malus_domestica MD01G1113200.v1.1 MD09G1101600.v1.1 MD17G1084600.v1.1
prunus_persica Prupe.3G224400_v2.0.a1 Prupe.3G224500_v2.0.a1 Prupe.3G224600_v2.0.a1
pyrus_communis pycom02g19930 pycom09g00760 pycom09g00770 pycom17g08170
rosa_chinensis RchiOBHm_Chr1g0350511 RchiOBHm_Chr2g0086171 RchiOBHm_Chr2g0117831 RchiOBHm_Chr3g0450391 RchiOBHm_Chr4g0409631 RchiOBHm_Chr5g0039731
rosa_laevigata RLG00000008538 RLG00000018375 RLG00000021415 RLG00000028481 RLG00000033926 RLG00000033937 RLG00000033938 RLG00000033939 RLG00000033941
rosa_multiflora Rmu_sc0000103.1_g000011 Rmu_sc0000330.1_g000009 Rmu_sc0000652.1_g000002 Rmu_sc0001507.1_g000017 Rmu_sc0004020.1_g000010 Rmu_sc0026676.1_g000001 Rmu_ssc0000083.1_g000022 Rmu_ssc0000400.1_g000021
rosa_roxburghii Rroxscaffold_1G00040760 Rroxscaffold_1G00041490 Rroxscaffold_1G00041500 Rroxscaffold_1G00041630 Rroxscaffold_2G00087990 Rroxscaffold_2G00126200 Rroxscaffold_4G00304800 Rroxscaffold_5G00354160 Rroxscaffold_5G00354170
rosa_rugosa Rorug01G0211500 Rorug02G0214300 Rorug02G0496800 Rorug02G0627700 Rorug04G0095600 Rorug05G0181700
rosa_samantha Rh1AG226300 Rh1BG194700 Rh1CG211100 Rh1DG222900 Rh2AG270500 Rh2AG270600 Rh2AG562900 Rh2AG563000 Rh2BG281900 Rh2BG282000 Rh2BG575700 Rh2CG269300 Rh2CG269400 Rh2DG278300 Rh2DG296200 Rh2DG585900 Rh3AG028000 Rh3AG028100 Rh3BG028500 Rh3BG028600 Rh3CG027300 Rh3CG027400 Rh3DG028400 Rh3DG028500 Rh4BG156800 Rh4CG167300 Rh4CG167400 Rh4DG151100 Rh5AG268000 Rh5BG272400 Rh5BG272500 Rh5CG304000 Rh5CG305000 Rh5CG305100 Rh5DG280500
rosa_wichuraiana Rw1G019530 Rw2G021370 Rw4G012860 Rw4G012970 Rw5G025070

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 311
AccB7I CCANNNNNTGG 1 cut(s) 571
AccII CGCG 1 cut(s) 434
AccIII TCCGGA 1 cut(s) 138
AciI CCGC 1 cut(s) 210
AclWI GGATC 3 cut(s) 112, 127, 733
AcoI YGGCCR 1 cut(s) 472
AcsI RAATTY 3 cut(s) 20, 249, 281
AcuI CTGAAG 2 cut(s) 525, 560
AdeI CACNNNGTG 1 cut(s) 30
AfaI GTAC 2 cut(s) 193, 659
AfiI CCNNNNNNNGG 3 cut(s) 541, 544, 571
AgsI TTSAA 6 cut(s) 19, 227, 248, 281, 382, 614
AjnI CCWGG 1 cut(s) 361
AluBI AGCT 5 cut(s) 126, 146, 324, 509, 683
AluI AGCT 5 cut(s) 126, 146, 324, 509, 683
Alw26I GTCTC 1 cut(s) 5
AlwI GGATC 3 cut(s) 112, 127, 733
Ama87I CYCGRG 1 cut(s) 720
Aor13HI TCCGGA 1 cut(s) 138
AoxI GGCC 1 cut(s) 472
ApeKI GCWGC 1 cut(s) 680
ApoI RAATTY 3 cut(s) 20, 249, 281
ArsI GACNNNNNNTTYG 2 cut(s) 505, 537
AspLEI GCGC 2 cut(s) 434, 436
AsuHPI GGTGA 2 cut(s) 16, 559
AvaI CYCGRG 1 cut(s) 720
AxyI CCTNAGG 1 cut(s) 233
BalI TGGCCA 1 cut(s) 474
BbvI GCAGC 1 cut(s) 692
BccI CCATC 1 cut(s) 565
BciT130I CCWGG 1 cut(s) 363
BcoDI GTCTC 1 cut(s) 5
BfaI CTAG 1 cut(s) 8
BfmI CTRYAG 1 cut(s) 71
BisI GCNGC 1 cut(s) 681
BlsI GCNGC 1 cut(s) 682
BmcAI AGTACT 1 cut(s) 659
Bme1390I CCNGG 1 cut(s) 363
BmeT110I CYCGRG 1 cut(s) 720
BmrFI CCNGG 1 cut(s) 363
BmrI ACTGGG 1 cut(s) 22
BmsI GCATC 1 cut(s) 490
BmuI ACTGGG 1 cut(s) 22
BplI GAGNNNNNCTC 2 cut(s) 701, 733
BpmI CTGGAG 1 cut(s) 375
BpuEI CTTGAG 1 cut(s) 302
BsaI GGTCTC 1 cut(s) 5
BsaJI CCNNGG 1 cut(s) 361
BsaWI WCCGGW 1 cut(s) 138
Bsc4I CCNNNNNNNGG 3 cut(s) 541, 544, 571
Bse1I ACTGG 2 cut(s) 28, 392
Bse21I CCTNAGG 1 cut(s) 233
BseAI TCCGGA 1 cut(s) 138
BseBI CCWGG 1 cut(s) 363
BseDI CCNNGG 1 cut(s) 361
BseGI GGATG 2 cut(s) 357, 505
BseLI CCNNNNNNNGG 3 cut(s) 541, 544, 571
BseMII CTCAG 1 cut(s) 509
BseNI ACTGG 2 cut(s) 28, 392
BsePI GCGCGC 1 cut(s) 432
BseXI GCAGC 1 cut(s) 692
BseYI CCCAGC 1 cut(s) 104
BsgI GTGCAG 1 cut(s) 463
Bsh1236I CGCG 1 cut(s) 434
BshFI GGCC 1 cut(s) 474
BsiHKCI CYCGRG 1 cut(s) 720
BsiSI CCGG 1 cut(s) 139
BslFI GGGAC 2 cut(s) 507, 726
BslI CCNNNNNNNGG 3 cut(s) 541, 544, 571
BsmAI GTCTC 1 cut(s) 5
BsmFI GGGAC 2 cut(s) 507, 726
BsmI GAATGC 1 cut(s) 47
BsnI GGCC 1 cut(s) 474
Bso31I GGTCTC 1 cut(s) 5
BsoBI CYCGRG 1 cut(s) 720
Bsp13I TCCGGA 1 cut(s) 138
Bsp143I GATC 3 cut(s) 117, 132, 725
BspACI CCGC 1 cut(s) 210
BspANI GGCC 1 cut(s) 474
BspCNI CTCAG 1 cut(s) 510
BspEI TCCGGA 1 cut(s) 138
BspFNI CGCG 1 cut(s) 434
BspPI GGATC 3 cut(s) 112, 127, 733
BspTNI GGTCTC 1 cut(s) 5
BsrI ACTGG 2 cut(s) 28, 392
BssECI CCNNGG 1 cut(s) 361
BssHII GCGCGC 1 cut(s) 432
BssMI GATC 3 cut(s) 117, 132, 725
Bst2UI CCWGG 1 cut(s) 363
Bst4CI ACNGT 2 cut(s) 169, 196
BstC8I GCNNGC 2 cut(s) 373, 434
BstDEI CTNAG 2 cut(s) 233, 518
BstF5I GGATG 2 cut(s) 357, 505
BstFNI CGCG 1 cut(s) 434
BstHHI GCGC 2 cut(s) 434, 436
BstKTI GATC 3 cut(s) 120, 135, 728
BstMAI GTCTC 1 cut(s) 5
BstMBI GATC 3 cut(s) 117, 132, 725
BstNI CCWGG 1 cut(s) 363
BstNSI RCATGY 1 cut(s) 375
BstSCI CCNGG 1 cut(s) 361
BstSFI CTRYAG 1 cut(s) 71
BstUI CGCG 1 cut(s) 434
BstV1I GCAGC 1 cut(s) 692
BstXI CCANNNNNNTGG 1 cut(s) 407
Bsu36I CCTNAGG 1 cut(s) 233
BsuRI GGCC 1 cut(s) 474
BtsCI GGATG 2 cut(s) 357, 505
BtsI GCAGTG 1 cut(s) 475
BtsIMutI CAGTG 3 cut(s) 35, 165, 475
Cac8I GCNNGC 2 cut(s) 373, 434
CfoI GCGC 2 cut(s) 434, 436
Csp6I GTAC 2 cut(s) 192, 658
CviAII CATG 4 cut(s) 300, 372, 578, 617
CviJI RGCY 8 cut(s) 126, 146, 238, 324, 474, 509, 668, 683
CviKI_1 RGCY 8 cut(s) 126, 146, 238, 324, 474, 509, 668, 683
CviQI GTAC 2 cut(s) 192, 658
DdeI CTNAG 2 cut(s) 233, 518
DpnI GATC 3 cut(s) 119, 134, 727
DpnII GATC 3 cut(s) 117, 132, 725
DraIII CACNNNGTG 1 cut(s) 30
EaeI YGGCCR 1 cut(s) 472
Eco31I GGTCTC 1 cut(s) 5
Eco57I CTGAAG 2 cut(s) 525, 560
Eco81I CCTNAGG 1 cut(s) 233
Eco88I CYCGRG 1 cut(s) 720
EcoRI GAATTC 1 cut(s) 281
EcoRII CCWGG 1 cut(s) 361
FaeI CATG 4 cut(s) 303, 375, 581, 620
FaqI GGGAC 2 cut(s) 507, 726
FatI CATG 4 cut(s) 299, 371, 577, 616
Fnu4HI GCNGC 1 cut(s) 681
FokI GGATG 2 cut(s) 344, 512
Fsp4HI GCNGC 1 cut(s) 681
FspBI CTAG 1 cut(s) 8
GlaI GCGC 2 cut(s) 433, 435
GluI GCNGC 1 cut(s) 681
GsaI CCCAGC 1 cut(s) 108
GsuI CTGGAG 1 cut(s) 375
HaeIII GGCC 1 cut(s) 474
HapII CCGG 1 cut(s) 139
HhaI GCGC 2 cut(s) 434, 436
Hin1II CATG 4 cut(s) 303, 375, 581, 620
Hin6I GCGC 2 cut(s) 432, 434
HinP1I GCGC 2 cut(s) 432, 434
HinfI GANTC 3 cut(s) 184, 520, 714
HpaII CCGG 1 cut(s) 139
HphI GGTGA 2 cut(s) 16, 559
Hpy166II GTNNAC 2 cut(s) 165, 400
Hpy188I TCNGA 5 cut(s) 38, 132, 519, 654, 673
Hpy188III TCNNGA 4 cut(s) 121, 139, 319, 382
Hpy8I GTNNAC 2 cut(s) 165, 400
HpyAV CCTTC 4 cut(s) 25, 535, 535, 682
HpyCH4III ACNGT 2 cut(s) 169, 196
HpyCH4V TGCA 2 cut(s) 480, 631
HpyF3I CTNAG 2 cut(s) 233, 518
Hsp92II CATG 4 cut(s) 303, 375, 581, 620
HspAI GCGC 2 cut(s) 432, 434
Kpn2I TCCGGA 1 cut(s) 138
Kzo9I GATC 3 cut(s) 117, 132, 725
LmnI GCTCC 2 cut(s) 67, 345
Lsp1109I GCAGC 1 cut(s) 692
LweI GCATC 1 cut(s) 490
MaeI CTAG 1 cut(s) 8
MaeIII GTNAC 1 cut(s) 92
MalI GATC 3 cut(s) 119, 134, 727
MboI GATC 3 cut(s) 117, 132, 725
MboII GAAGA 1 cut(s) 562
MlsI TGGCCA 1 cut(s) 474
MluCI AATT 8 cut(s) 20, 177, 249, 281, 330, 411, 457, 491
MluNI TGGCCA 1 cut(s) 474
MlyI GAGTC 2 cut(s) 529, 708
MmeI TCCRAC 2 cut(s) 323, 444
MnlI CCTC 6 cut(s) 146, 326, 574, 679, 703, 754
Mox20I TGGCCA 1 cut(s) 474
MroI TCCGGA 1 cut(s) 138
MscI TGGCCA 1 cut(s) 474
MseI TTAA 3 cut(s) 51, 180, 752
MslI CAYNNNNRTG 1 cut(s) 582
Msp20I TGGCCA 1 cut(s) 474
MspI CCGG 1 cut(s) 139
MspR9I CCNGG 1 cut(s) 363
Mva1269I GAATGC 1 cut(s) 47
MvaI CCWGG 1 cut(s) 363
MvnI CGCG 1 cut(s) 434
NdeII GATC 3 cut(s) 117, 132, 725
NlaIII CATG 4 cut(s) 303, 375, 581, 620
NspI RCATGY 1 cut(s) 375
PaeI GCATGC 1 cut(s) 375
PauI GCGCGC 1 cut(s) 432
PctI GAATGC 1 cut(s) 47
PfeI GAWTC 1 cut(s) 184
PflMI CCANNNNNTGG 1 cut(s) 571
PkrI GCNGC 1 cut(s) 682
PleI GAGTC 2 cut(s) 528, 708
PpsI GAGTC 2 cut(s) 528, 708
PsiI TTATAA 1 cut(s) 311
Psp6I CCWGG 1 cut(s) 361
PspFI CCCAGC 1 cut(s) 104
PspGI CCWGG 1 cut(s) 361
PteI GCGCGC 1 cut(s) 432
RsaI GTAC 2 cut(s) 193, 659
RsaNI GTAC 2 cut(s) 192, 658
RseI CAYNNNNRTG 1 cut(s) 582
SaqAI TTAA 3 cut(s) 51, 180, 752
SatI GCNGC 1 cut(s) 681
Sau3AI GATC 3 cut(s) 117, 132, 725
ScaI AGTACT 1 cut(s) 659
SchI GAGTC 2 cut(s) 529, 708
ScrFI CCNGG 1 cut(s) 363
SfaNI GCATC 1 cut(s) 490
SfcI CTRYAG 1 cut(s) 71
SmiMI CAYNNNNRTG 1 cut(s) 582
SmlI CTYRAG 1 cut(s) 317
SmoI CTYRAG 1 cut(s) 317
SphI GCATGC 1 cut(s) 375
Sse9I AATT 8 cut(s) 20, 177, 249, 281, 330, 411, 457, 491
SsiI CCGC 1 cut(s) 210
SspMI CTAG 1 cut(s) 8
StyD4I CCNGG 1 cut(s) 361
TaaI ACNGT 2 cut(s) 169, 196
TasI AATT 8 cut(s) 20, 177, 249, 281, 330, 411, 457, 491
TatI WGTACW 2 cut(s) 191, 657
TfiI GAWTC 1 cut(s) 184
Tru1I TTAA 3 cut(s) 51, 180, 752
Tru9I TTAA 3 cut(s) 51, 180, 752
TscAI CASTG 3 cut(s) 35, 172, 482
TseI GCWGC 1 cut(s) 680
TspDTI ATGAA 2 cut(s) 176, 294
TspGWI ACGGA 1 cut(s) 150
TspRI CASTG 3 cut(s) 35, 172, 482
Van91I CCANNNNNTGG 1 cut(s) 571
XapI RAATTY 3 cut(s) 20, 249, 281
XceI RCATGY 1 cut(s) 375
XcmI CCANNNNNNNNNTGG 1 cut(s) 444
XspI CTAG 1 cut(s) 8
ZrmI AGTACT 1 cut(s) 659
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.