RchiOBHm_Chr5g0039731

F-box FBD LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0000467
Physical Location & Seq
Reverse (-)
34424491 .. 34425918
1428 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ31829

Sequence Viewer

Length: 1428 bp
ATGTTGCATCTCATACTCTCATTCTTGCCTTTCAAATACGTTGGGCAAACTAGTGTCTTATCTCGAAGATGGAGTCATGTATGGTCTTCCTATCCCATCTTTGACTTCTACGAGATTTTTACTGGTATTGAAGCTGAACATCACCAGACAAGAGCAAGCATCATCAACACAGTATTGGCACGCGATCGTCACAACGAAAACTATAACATGATGTACCCATGCCAAAAAATTCCCTTGCCAAGCGGTAGACTAGGTCAATTTCGTATAGTTGGGGAGAATCCAAACAATTCTTGTTTGGCTAGGGTTGAGGAACTTGTACTCGATATCTCGTTGAGTAGTGCAAATACATCTAATTTGCCTCGATGTCAACTTAAGTGCCACTCATTAACGAGTAGTAGCTGTGGGAGTTCAAAGGCATGGCTAGGGTTTTCCTCTACTTATGTTGTCTGGTCTTTTCTCCTTTCACTCCAAGATTTGTCTCTAGCTCATGTGGATTTCTCGGATAGTGCTTTGGGTGTGGATTTATTTTCTGGTTCTTCATTCCCTTTTCTCAAAAAATTGAATATAGAGCGGTGTAGAGGAATGACTGCTCTCAAAATTTGCTGTCCGAACCTAAAAGTTGTATATGTTTTCAGAATGGATCTATATAGCATGGACATCTCTGGAATGAGACTAGAGAAGTTGTCTTGTGTTGAAAATTGCATCGATGGTTGGGTCAACATTTTTTCCCCCAATCTACAATACTTATATTGGGGCAATGCAATTACTGAGAAGTGTTCCATCCAGAGCTTTCCAAAGCCCAAAAGATCTTCCCTGAGTTATTCTTTTCGGTTAGGCATTACAACAACAAAGATTTTTCATAAAAGTGTTATCAATCTTCTTTGCCATTCATCCCAAGCAGAGATACTTGGTATATTTGATGACTACCTCGAGATTCTATCAGACATTTATACTGAATTTGGTGGTGTACCTTTCTCATTTTTCAAACTTGAAACCTTGAGAATTGGGTCCACAATGAAGCAAAGATATATCCCGGGAATAGCATGCCTGTTGAAGAGCTCTCCCTTACTTAACACCCTCTACTTTGAATTTTACTATTTCGAAGAAAATGGTAAGTGGAATAACATTATGTTGGATAATGGCAATTGCACTCAAGAGCAATACTGGGAAACTCAGGCTCAACATTTGCTCCCCTTTCTTAGTCACCTAAAGGTGGTCGACATTGGCCTTGGTAACATGATCTCTGAGAGTGCAATCACTTTTGCAAAGTTTTTGCTTAAATATGGAAGAGGCCTGCGAAAAATGACTCTTAGCTTTTGGAGGAGCGGAAGTTCACTTTCTCCGAATTCGCTAAATGATACCATTGATTTATTAAAGGGTTTTCCCCGGGCATCTGCAGATGTTGAGTTCTCAAGATTCTGCTATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBD

Protein Analysis

475

Amino Acids

54.16

Weight (kDa)

8.4

Isoelectric Point (pI)

42.77

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000467)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g02550 FvH4_6g26921 FvH4_6g45630
malus_domestica MD01G1113200.v1.1 MD09G1101600.v1.1 MD17G1084600.v1.1
prunus_persica Prupe.3G224400_v2.0.a1 Prupe.3G224500_v2.0.a1 Prupe.3G224600_v2.0.a1
pyrus_communis pycom02g19930 pycom09g00760 pycom09g00770 pycom17g08170
rosa_chinensis RchiOBHm_Chr1g0350511 RchiOBHm_Chr2g0086171 RchiOBHm_Chr2g0117831 RchiOBHm_Chr3g0450391 RchiOBHm_Chr4g0409631 RchiOBHm_Chr5g0039731
rosa_laevigata RLG00000008538 RLG00000018375 RLG00000021415 RLG00000028481 RLG00000033926 RLG00000033937 RLG00000033938 RLG00000033939 RLG00000033941
rosa_multiflora Rmu_sc0000103.1_g000011 Rmu_sc0000330.1_g000009 Rmu_sc0000652.1_g000002 Rmu_sc0001507.1_g000017 Rmu_sc0004020.1_g000010 Rmu_sc0026676.1_g000001 Rmu_ssc0000083.1_g000022 Rmu_ssc0000400.1_g000021
rosa_roxburghii Rroxscaffold_1G00040760 Rroxscaffold_1G00041490 Rroxscaffold_1G00041500 Rroxscaffold_1G00041630 Rroxscaffold_2G00087990 Rroxscaffold_2G00126200 Rroxscaffold_4G00304800 Rroxscaffold_5G00354160 Rroxscaffold_5G00354170
rosa_rugosa Rorug01G0211500 Rorug02G0214300 Rorug02G0496800 Rorug02G0627700 Rorug04G0095600 Rorug05G0181700
rosa_samantha Rh1AG226300 Rh1BG194700 Rh1CG211100 Rh1DG222900 Rh2AG270500 Rh2AG270600 Rh2AG562900 Rh2AG563000 Rh2BG281900 Rh2BG282000 Rh2BG575700 Rh2CG269300 Rh2CG269400 Rh2DG278300 Rh2DG296200 Rh2DG585900 Rh3AG028000 Rh3AG028100 Rh3BG028500 Rh3BG028600 Rh3CG027300 Rh3CG027400 Rh3DG028400 Rh3DG028500 Rh4BG156800 Rh4CG167300 Rh4CG167400 Rh4DG151100 Rh5AG268000 Rh5BG272400 Rh5BG272500 Rh5CG304000 Rh5CG305000 Rh5CG305100 Rh5DG280500
rosa_wichuraiana Rw1G019530 Rw2G021370 Rw4G012860 Rw4G012970 Rw5G025070

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 2 cut(s) 571, 1326
AccI GTMKAC 2 cut(s) 247, 1218
AccII CGCG 1 cut(s) 183
AciI CCGC 3 cut(s) 243, 571, 1326
AclWI GGATC 1 cut(s) 648
AcsI RAATTY 5 cut(s) 228, 597, 956, 1088, 1345
AfaI GTAC 3 cut(s) 215, 318, 969
AfiI CCNNNNNNNGG 1 cut(s) 1213
AflII CTTAAG 1 cut(s) 371
AgsI TTSAA 9 cut(s) 34, 131, 411, 562, 695, 985, 992, 1054, 1088
AhlI ACTAGT 1 cut(s) 50
AloI GAACNNNNNNTCC 2 cut(s) 1315, 1347
AluBI AGCT 6 cut(s) 134, 399, 485, 789, 1059, 1314
AluI AGCT 6 cut(s) 134, 399, 485, 789, 1059, 1314
Alw21I GWGCWC 1 cut(s) 1061
Alw26I GTCTC 2 cut(s) 483, 664
AlwI GGATC 1 cut(s) 648
Ama87I CYCGRG 3 cut(s) 929, 1033, 1386
AoxI GGCC 2 cut(s) 1225, 1291
ApoI RAATTY 5 cut(s) 228, 597, 956, 1088, 1345
ArsI GACNNNNNNTTYG 2 cut(s) 58, 90
AspS9I GGNCC 1 cut(s) 1008
AsuC2I CCSGG 4 cut(s) 1034, 1035, 1387, 1388
AsuHPI GGTGA 2 cut(s) 134, 1196
AsuII TTCGAA 1 cut(s) 1101
AvaI CYCGRG 3 cut(s) 929, 1033, 1386
AvaII GGWCC 1 cut(s) 1008
BanII GRGCYC 1 cut(s) 1061
BbsI GAAGAC 1 cut(s) 78
Bbv12I GWGCWC 1 cut(s) 1061
BccI CCATC 4 cut(s) 63, 104, 701, 788
BcnI CCSGG 4 cut(s) 1034, 1035, 1387, 1388
BcoDI GTCTC 2 cut(s) 483, 664
BcuI ACTAGT 1 cut(s) 50
BfaI CTAG 6 cut(s) 51, 251, 300, 422, 482, 674
BfmI CTRYAG 1 cut(s) 1395
BfrI CTTAAG 1 cut(s) 371
BglII AGATCT 1 cut(s) 806
Bme1390I CCNGG 4 cut(s) 1034, 1035, 1387, 1388
Bme18I GGWCC 1 cut(s) 1008
BmeT110I CYCGRG 3 cut(s) 929, 1033, 1386
BmgT120I GGNCC 1 cut(s) 1008
BmiI GGNNCC 1 cut(s) 1009
BmrFI CCNGG 4 cut(s) 1034, 1035, 1387, 1388
BmrI ACTGGG 1 cut(s) 1174
BmsI GCATC 4 cut(s) 16, 168, 711, 1400
BmuI ACTGGG 1 cut(s) 1174
BpiI GAAGAC 1 cut(s) 78
Bpu14I TTCGAA 1 cut(s) 1101
BpuEI CTTGAG 3 cut(s) 1018, 1137, 1396
BpuMI CCSGG 4 cut(s) 1034, 1035, 1387, 1388
Bsa29I ATCGAT 1 cut(s) 705
BsaJI CCNNGG 4 cut(s) 1033, 1228, 1385, 1386
BsaXI ACNNNNNCTCC 4 cut(s) 1173, 1203, 1315, 1345
Bsc4I CCNNNNNNNGG 1 cut(s) 1213
Bse1I ACTGG 2 cut(s) 127, 1169
Bse3DI GCAATG 1 cut(s) 763
BseCI ATCGAT 1 cut(s) 705
BseDI CCNNGG 4 cut(s) 1033, 1228, 1385, 1386
BseGI GGATG 2 cut(s) 780, 890
BseLI CCNNNNNNNGG 1 cut(s) 1213
BseMI GCAATG 1 cut(s) 763
BseMII CTCAG 4 cut(s) 759, 806, 1187, 1236
BseNI ACTGG 2 cut(s) 127, 1169
BseRI GAGGAG 1 cut(s) 1336
Bsh1236I CGCG 1 cut(s) 183
Bsh1285I CGRYCG 1 cut(s) 187
BshFI GGCC 2 cut(s) 1227, 1293
BshVI ATCGAT 1 cut(s) 705
BsiEI CGRYCG 1 cut(s) 187
BsiHKAI GWGCWC 1 cut(s) 1061
BsiHKCI CYCGRG 3 cut(s) 929, 1033, 1386
BsiSI CCGG 2 cut(s) 1034, 1387
BslI CCNNNNNNNGG 1 cut(s) 1213
BsmAI GTCTC 2 cut(s) 483, 664
BsnI GGCC 2 cut(s) 1227, 1293
BsoBI CYCGRG 3 cut(s) 929, 1033, 1386
Bsp119I TTCGAA 1 cut(s) 1101
Bsp1286I GDGCHC 1 cut(s) 1061
Bsp143I GATC 4 cut(s) 184, 640, 806, 1239
BspACI CCGC 3 cut(s) 243, 571, 1326
BspANI GGCC 2 cut(s) 1227, 1293
BspCNI CTCAG 4 cut(s) 760, 807, 1186, 1237
BspDI ATCGAT 1 cut(s) 705
BspFNI CGCG 1 cut(s) 183
BspLI GGNNCC 1 cut(s) 1009
BspMAI CTGCAG 1 cut(s) 1399
BspPI GGATC 1 cut(s) 648
BspQI GCTCTTC 1 cut(s) 1049
BspT104I TTCGAA 1 cut(s) 1101
BspTI CTTAAG 1 cut(s) 371
BsrBI CCGCTC 2 cut(s) 571, 1326
BsrDI GCAATG 1 cut(s) 763
BsrI ACTGG 2 cut(s) 127, 1169
BssECI CCNNGG 4 cut(s) 1033, 1228, 1385, 1386
BssMI GATC 4 cut(s) 184, 640, 806, 1239
BssT1I CCWWGG 1 cut(s) 1228
Bst4CI ACNGT 1 cut(s) 172
Bst6I CTCTTC 2 cut(s) 1049, 1282
BstAFI CTTAAG 1 cut(s) 371
BstBI TTCGAA 1 cut(s) 1101
BstC8I GCNNGC 4 cut(s) 157, 181, 1045, 1295
BstDEI CTNAG 6 cut(s) 768, 815, 1173, 1199, 1245, 1310
BstF5I GGATG 2 cut(s) 780, 890
BstFNI CGCG 1 cut(s) 183
BstKTI GATC 4 cut(s) 187, 643, 809, 1242
BstMAI GTCTC 2 cut(s) 483, 664
BstMBI GATC 4 cut(s) 184, 640, 806, 1239
BstMCI CGRYCG 1 cut(s) 187
BstNSI RCATGY 1 cut(s) 1047
BstSCI CCNGG 4 cut(s) 1032, 1033, 1385, 1386
BstSFI CTRYAG 1 cut(s) 1395
BstUI CGCG 1 cut(s) 183
BstV2I GAAGAC 1 cut(s) 78
BstX2I RGATCY 2 cut(s) 640, 806
BstYI RGATCY 2 cut(s) 640, 806
Bsu15I ATCGAT 1 cut(s) 705
BsuRI GGCC 2 cut(s) 1227, 1293
BsuTUI ATCGAT 1 cut(s) 705
BtsCI GGATG 2 cut(s) 780, 890
Cac8I GCNNGC 4 cut(s) 157, 181, 1045, 1295
Cfr13I GGNCC 1 cut(s) 1008
Cfr9I CCCGGG 2 cut(s) 1033, 1386
ClaI ATCGAT 1 cut(s) 705
Csp6I GTAC 3 cut(s) 214, 317, 968
CviAII CATG 8 cut(s) 77, 208, 219, 417, 488, 652, 1044, 1237
CviQI GTAC 3 cut(s) 214, 317, 968
DdeI CTNAG 6 cut(s) 768, 815, 1173, 1199, 1245, 1310
DpnI GATC 4 cut(s) 186, 642, 808, 1241
DpnII GATC 4 cut(s) 184, 640, 806, 1239
Eam1104I CTCTTC 2 cut(s) 1049, 1282
EarI CTCTTC 2 cut(s) 1049, 1282
Ecl136II GAGCTC 1 cut(s) 1059
Eco130I CCWWGG 1 cut(s) 1228
Eco147I AGGCCT 1 cut(s) 1293
Eco24I GRGCYC 1 cut(s) 1061
Eco32I GATATC 1 cut(s) 325
Eco47I GGWCC 1 cut(s) 1008
Eco53kI GAGCTC 1 cut(s) 1059
Eco88I CYCGRG 3 cut(s) 929, 1033, 1386
EcoICRI GAGCTC 1 cut(s) 1059
EcoRI GAATTC 1 cut(s) 1345
EcoRV GATATC 1 cut(s) 325
EcoT14I CCWWGG 1 cut(s) 1228
EcoT38I GRGCYC 1 cut(s) 1061
ErhI CCWWGG 1 cut(s) 1228
FaeI CATG 8 cut(s) 80, 211, 222, 420, 491, 655, 1047, 1240
FatI CATG 8 cut(s) 76, 207, 218, 416, 487, 651, 1043, 1236
FblI GTMKAC 2 cut(s) 247, 1218
FokI GGATG 2 cut(s) 767, 877
FriOI GRGCYC 1 cut(s) 1061
FspBI CTAG 6 cut(s) 51, 251, 300, 422, 482, 674
HaeIII GGCC 2 cut(s) 1227, 1293
HapII CCGG 2 cut(s) 1034, 1387
Hin1II CATG 8 cut(s) 80, 211, 222, 420, 491, 655, 1047, 1240
HincII GTYRAC 3 cut(s) 368, 718, 1219
HindII GTYRAC 3 cut(s) 368, 718, 1219
HinfI GANTC 5 cut(s) 73, 277, 934, 1306, 1416
HpaII CCGG 2 cut(s) 1034, 1387
HphI GGTGA 2 cut(s) 134, 1196
Hpy166II GTNNAC 7 cut(s) 248, 368, 718, 968, 1011, 1219, 1334
Hpy188I TCNGA 6 cut(s) 502, 609, 635, 943, 1246, 1344
Hpy188III TCNNGA 6 cut(s) 63, 663, 784, 931, 1154, 1413
Hpy8I GTNNAC 7 cut(s) 248, 368, 718, 968, 1011, 1219, 1334
HpyCH4III ACNGT 1 cut(s) 172
HpyCH4IV ACGT 1 cut(s) 39
HpyCH4V TGCA 8 cut(s) 7, 341, 702, 761, 1149, 1253, 1265, 1397
HpyF3I CTNAG 6 cut(s) 768, 815, 1173, 1199, 1245, 1310
HpySE526I ACGT 1 cut(s) 39
Hsp92II CATG 8 cut(s) 80, 211, 222, 420, 491, 655, 1047, 1240
Kzo9I GATC 4 cut(s) 184, 640, 806, 1239
LguI GCTCTTC 1 cut(s) 1049
LmnI GCTCC 2 cut(s) 1194, 1323
LweI GCATC 4 cut(s) 16, 168, 711, 1400
MaeI CTAG 6 cut(s) 51, 251, 300, 422, 482, 674
MaeII ACGT 1 cut(s) 39
MaeIII GTNAC 3 cut(s) 188, 1202, 1232
MalI GATC 4 cut(s) 186, 642, 808, 1241
MbiI CCGCTC 2 cut(s) 571, 1326
MboI GATC 4 cut(s) 184, 640, 806, 1239
MboII GAAGA 8 cut(s) 78, 78, 528, 801, 869, 1066, 1115, 1299
MfeI CAATTG 1 cut(s) 1144
MflI RGATCY 2 cut(s) 640, 806
MhlI GDGCHC 1 cut(s) 1061
MlyI GAGTC 2 cut(s) 82, 1300
MmeI TCCRAC 1 cut(s) 1113
MnlI CCTC 8 cut(s) 301, 369, 442, 572, 938, 1088, 1283, 1314
MseI TTAA 5 cut(s) 372, 386, 1071, 1278, 1373
MslI CAYNNNNRTG 1 cut(s) 864
MspCI CTTAAG 1 cut(s) 371
MspI CCGG 2 cut(s) 1034, 1387
MspR9I CCNGG 4 cut(s) 1034, 1035, 1387, 1388
MunI CAATTG 1 cut(s) 1144
MvnI CGCG 1 cut(s) 183
NciI CCSGG 4 cut(s) 1034, 1035, 1387, 1388
NdeII GATC 4 cut(s) 184, 640, 806, 1239
NlaIII CATG 8 cut(s) 80, 211, 222, 420, 491, 655, 1047, 1240
NlaIV GGNNCC 1 cut(s) 1009
NmuCI GTSAC 2 cut(s) 188, 1202
NspI RCATGY 1 cut(s) 1047
NspV TTCGAA 1 cut(s) 1101
PaeI GCATGC 1 cut(s) 1047
PaeR7I CTCGAG 1 cut(s) 929
PceI AGGCCT 1 cut(s) 1293
PciSI GCTCTTC 1 cut(s) 1049
PfeI GAWTC 3 cut(s) 277, 934, 1416
PflFI GACNNNGTC 1 cut(s) 252
Ple19I CGATCG 1 cut(s) 187
PleI GAGTC 2 cut(s) 81, 1300
PpsI GAGTC 2 cut(s) 81, 1300
Psp124BI GAGCTC 1 cut(s) 1061
PspN4I GGNNCC 1 cut(s) 1009
PspPI GGNCC 1 cut(s) 1008
PstI CTGCAG 1 cut(s) 1399
PsuI RGATCY 2 cut(s) 640, 806
PsyI GACNNNGTC 1 cut(s) 252
PvuI CGATCG 1 cut(s) 187
RsaI GTAC 3 cut(s) 215, 318, 969
RsaNI GTAC 3 cut(s) 214, 317, 968
RseI CAYNNNNRTG 1 cut(s) 864
SacI GAGCTC 1 cut(s) 1061
SalI GTCGAC 1 cut(s) 1217
SapI GCTCTTC 1 cut(s) 1049
SaqAI TTAA 5 cut(s) 372, 386, 1071, 1278, 1373
Sau3AI GATC 4 cut(s) 184, 640, 806, 1239
Sau96I GGNCC 1 cut(s) 1008
SchI GAGTC 2 cut(s) 82, 1300
ScrFI CCNGG 4 cut(s) 1034, 1035, 1387, 1388
SduI GDGCHC 1 cut(s) 1061
SfaNI GCATC 4 cut(s) 16, 168, 711, 1400
SfcI CTRYAG 1 cut(s) 1395
Sfr274I CTCGAG 1 cut(s) 929
SfuI TTCGAA 1 cut(s) 1101
SinI GGWCC 1 cut(s) 1008
SlaI CTCGAG 1 cut(s) 929
SmaI CCCGGG 2 cut(s) 1035, 1388
SmiMI CAYNNNNRTG 1 cut(s) 864
SmlI CTYRAG 5 cut(s) 371, 929, 997, 1152, 1411
SmoI CTYRAG 5 cut(s) 371, 929, 997, 1152, 1411
SpeI ACTAGT 1 cut(s) 50
SphI GCATGC 1 cut(s) 1047
SseBI AGGCCT 1 cut(s) 1293
SsiI CCGC 3 cut(s) 243, 571, 1326
SspMI CTAG 6 cut(s) 51, 251, 300, 422, 482, 674
SstI GAGCTC 1 cut(s) 1061
StuI AGGCCT 1 cut(s) 1293
StyD4I CCNGG 4 cut(s) 1032, 1033, 1385, 1386
StyI CCWWGG 1 cut(s) 1228
TaaI ACNGT 1 cut(s) 172
TaiI ACGT 1 cut(s) 42
TaqI TCGA 7 cut(s) 64, 321, 361, 705, 930, 1101, 1218
TatI WGTACW 1 cut(s) 316
TfiI GAWTC 3 cut(s) 277, 934, 1416
Tru1I TTAA 5 cut(s) 372, 386, 1071, 1278, 1373
Tru9I TTAA 5 cut(s) 372, 386, 1071, 1278, 1373
TseFI GTSAC 2 cut(s) 188, 1202
Tsp45I GTSAC 2 cut(s) 188, 1202
TspDTI ATGAA 4 cut(s) 528, 848, 879, 1031
TspMI CCCGGG 2 cut(s) 1033, 1386
Tth111I GACNNNGTC 1 cut(s) 252
Vha464I CTTAAG 1 cut(s) 371
VpaK11BI GGWCC 1 cut(s) 1008
XapI RAATTY 5 cut(s) 228, 597, 956, 1088, 1345
XceI RCATGY 1 cut(s) 1047
XhoI CTCGAG 1 cut(s) 929
XmaI CCCGGG 2 cut(s) 1033, 1386
XmiI GTMKAC 2 cut(s) 247, 1218
XspI CTAG 6 cut(s) 51, 251, 300, 422, 482, 674
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.