Rroxscaffold_2G00087990

F-box FBD LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0000467
Physical Location & Seq
Reverse (-)
10069862 .. 10071910
2049 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00087990.1

Sequence Viewer

Length: 597 bp
ATGTTTCGACTTATTTTAAACTTAGCCCTGGGAAACAGATTTTCCAACTGTTTCACTCAAAAACAAAAAGCTTCAGATCGGCGGAGGGAGGAGGAAGAAGACAAGCACCGTGACAGAATCAGCGATCTCTCAGATGATATATTGCATCTCATACTCTCATTCTTGCCTTTGAAATCGGTTGGGCAAACCAGTGTCCTATCTCGAAGATGGAGTCATGTATGGTCTTCCTATCCTATCATCGACTTCTACGAGATCTTTACTGGTGATGAAGCTTTTCATCACCAGACAAAGGAAAGGATCATCAACACAGTGTTGGCTCCCCGCAACGAAAACTATAGTATAAGGATTTCTCCAATTCCGGGGGATCCGAACCGGTCTTGTTCTTTGTCTAGGGTTGAACACCTTGTACTCGACGTCTCGTTAAGCAGTGAAAACAGATCATTTGAATTGCCGCGATGTCAACTTAAGTGCCACTCATTACGGAGGCTTGAGTCTAATAACAGTAGATGTGGGAGTTCATGGCTAGGGTTTCCCTCTTCTTACGTTGTTGGGTCTTATCTCCGTTCACTTCACACATTGTCTCTAACGTGTGGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBD

Protein Analysis

198

Amino Acids

22.86

Weight (kDa)

8.81

Isoelectric Point (pI)

59.13

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 40 - 78 1.1e-08 F-box domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000467)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g02550 FvH4_6g26921 FvH4_6g45630
malus_domestica MD01G1113200.v1.1 MD09G1101600.v1.1 MD17G1084600.v1.1
prunus_persica Prupe.3G224400_v2.0.a1 Prupe.3G224500_v2.0.a1 Prupe.3G224600_v2.0.a1
pyrus_communis pycom02g19930 pycom09g00760 pycom09g00770 pycom17g08170
rosa_chinensis RchiOBHm_Chr1g0350511 RchiOBHm_Chr2g0086171 RchiOBHm_Chr2g0117831 RchiOBHm_Chr3g0450391 RchiOBHm_Chr4g0409631 RchiOBHm_Chr5g0039731
rosa_laevigata RLG00000008538 RLG00000018375 RLG00000021415 RLG00000028481 RLG00000033926 RLG00000033937 RLG00000033938 RLG00000033939 RLG00000033941
rosa_multiflora Rmu_sc0000103.1_g000011 Rmu_sc0000330.1_g000009 Rmu_sc0000652.1_g000002 Rmu_sc0001507.1_g000017 Rmu_sc0004020.1_g000010 Rmu_sc0026676.1_g000001 Rmu_ssc0000083.1_g000022 Rmu_ssc0000400.1_g000021
rosa_roxburghii Rroxscaffold_1G00040760 Rroxscaffold_1G00041490 Rroxscaffold_1G00041500 Rroxscaffold_1G00041630 Rroxscaffold_2G00087990 Rroxscaffold_2G00126200 Rroxscaffold_4G00304800 Rroxscaffold_5G00354160 Rroxscaffold_5G00354170
rosa_rugosa Rorug01G0211500 Rorug02G0214300 Rorug02G0496800 Rorug02G0627700 Rorug04G0095600 Rorug05G0181700
rosa_samantha Rh1AG226300 Rh1BG194700 Rh1CG211100 Rh1DG222900 Rh2AG270500 Rh2AG270600 Rh2AG562900 Rh2AG563000 Rh2BG281900 Rh2BG282000 Rh2BG575700 Rh2CG269300 Rh2CG269400 Rh2DG278300 Rh2DG296200 Rh2DG585900 Rh3AG028000 Rh3AG028100 Rh3BG028500 Rh3BG028600 Rh3CG027300 Rh3CG027400 Rh3DG028400 Rh3DG028500 Rh4BG156800 Rh4CG167300 Rh4CG167400 Rh4DG151100 Rh5AG268000 Rh5BG272400 Rh5BG272500 Rh5CG304000 Rh5CG305000 Rh5CG305100 Rh5DG280500
rosa_wichuraiana Rw1G019530 Rw2G021370 Rw4G012860 Rw4G012970 Rw5G025070

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 417
AccII CGCG 1 cut(s) 454
AciI CCGC 3 cut(s) 82, 322, 452
AclWI GGATC 3 cut(s) 305, 359, 372
AcuI CTGAAG 1 cut(s) 57
AcyI GRCGYC 1 cut(s) 414
AfaI GTAC 1 cut(s) 408
AfiI CCNNNNNNNGG 2 cut(s) 289, 359
AflII CTTAAG 1 cut(s) 464
AflIII ACRYGT 1 cut(s) 587
AgeI ACCGGT 1 cut(s) 372
AgsI TTSAA 3 cut(s) 172, 398, 446
AjnI CCWGG 1 cut(s) 27
AluBI AGCT 2 cut(s) 71, 272
AluI AGCT 2 cut(s) 71, 272
Alw26I GTCTC 2 cut(s) 421, 585
AlwI GGATC 3 cut(s) 305, 359, 372
ArsI GACNNNNNNTTYG 2 cut(s) 196, 228
AsiGI ACCGGT 1 cut(s) 372
Asp700I GAANNNNTTC 1 cut(s) 273
AsuC2I CCSGG 1 cut(s) 360
AsuHPI GGTGA 2 cut(s) 272, 275
BamHI GGATCC 1 cut(s) 364
BbsI GAAGAC 2 cut(s) 105, 216
BccI CCATC 1 cut(s) 201
BciT130I CCWGG 1 cut(s) 29
BcnI CCSGG 1 cut(s) 360
BcoDI GTCTC 2 cut(s) 421, 585
BfaI CTAG 2 cut(s) 390, 524
BfmI CTRYAG 1 cut(s) 334
BfrI CTTAAG 1 cut(s) 464
BglII AGATCT 1 cut(s) 252
BisI GCNGC 1 cut(s) 452
BlsI GCNGC 1 cut(s) 453
Bme1390I CCNGG 2 cut(s) 29, 360
BmiI GGNNCC 2 cut(s) 318, 366
BmrFI CCNGG 2 cut(s) 29, 360
BmsI GCATC 1 cut(s) 154
BpiI GAAGAC 2 cut(s) 105, 216
BpuEI CTTGAG 1 cut(s) 509
BpuMI CCSGG 1 cut(s) 360
BsaHI GRCGYC 1 cut(s) 414
BsaJI CCNNGG 3 cut(s) 27, 28, 359
BsaWI WCCGGW 1 cut(s) 372
Bsc4I CCNNNNNNNGG 2 cut(s) 289, 359
Bse118I RCCGGY 1 cut(s) 372
Bse1I ACTGG 2 cut(s) 189, 265
BseBI CCWGG 1 cut(s) 29
BseDI CCNNGG 3 cut(s) 27, 28, 359
BseLI CCNNNNNNNGG 2 cut(s) 289, 359
BseMII CTCAG 1 cut(s) 144
BseNI ACTGG 2 cut(s) 189, 265
BseRI GAGGAG 1 cut(s) 104
Bsh1236I CGCG 1 cut(s) 454
BshTI ACCGGT 1 cut(s) 372
BsiSI CCGG 2 cut(s) 359, 373
BslI CCNNNNNNNGG 2 cut(s) 289, 359
BsmAI GTCTC 2 cut(s) 421, 585
BsmBI CGTCTC 1 cut(s) 421
Bsp143I GATC 6 cut(s) 76, 124, 252, 297, 364, 437
BspACI CCGC 3 cut(s) 82, 322, 452
BspCNI CTCAG 1 cut(s) 143
BspFNI CGCG 1 cut(s) 454
BspLI GGNNCC 2 cut(s) 318, 366
BspPI GGATC 3 cut(s) 305, 359, 372
BspTI CTTAAG 1 cut(s) 464
BsrFI RCCGGY 1 cut(s) 372
BsrI ACTGG 2 cut(s) 189, 265
BssAI RCCGGY 1 cut(s) 372
BssECI CCNNGG 3 cut(s) 27, 28, 359
BssMI GATC 6 cut(s) 76, 124, 252, 297, 364, 437
BssNI GRCGYC 1 cut(s) 414
Bst2UI CCWGG 1 cut(s) 29
Bst4CI ACNGT 4 cut(s) 50, 110, 310, 503
Bst6I CTCTTC 1 cut(s) 541
BstACI GRCGYC 1 cut(s) 414
BstAFI CTTAAG 1 cut(s) 464
BstDEI CTNAG 2 cut(s) 22, 130
BstFNI CGCG 1 cut(s) 454
BstKTI GATC 6 cut(s) 79, 127, 255, 300, 367, 440
BstMAI GTCTC 2 cut(s) 421, 585
BstMBI GATC 6 cut(s) 76, 124, 252, 297, 364, 437
BstNI CCWGG 1 cut(s) 29
BstSCI CCNGG 2 cut(s) 27, 358
BstSFI CTRYAG 1 cut(s) 334
BstUI CGCG 1 cut(s) 454
BstV2I GAAGAC 2 cut(s) 105, 216
BstX2I RGATCY 2 cut(s) 252, 364
BstYI RGATCY 2 cut(s) 252, 364
BtgZI GCGATG 1 cut(s) 469
BtsI GCAGTG 1 cut(s) 433
BtsIMutI CAGTG 3 cut(s) 196, 315, 433
Cfr10I RCCGGY 1 cut(s) 372
Csp6I GTAC 1 cut(s) 407
CspAI ACCGGT 1 cut(s) 372
CviAII CATG 2 cut(s) 215, 519
CviJI RGCY 6 cut(s) 26, 71, 272, 317, 487, 523
CviKI_1 RGCY 6 cut(s) 26, 71, 272, 317, 487, 523
CviQI GTAC 1 cut(s) 407
DdeI CTNAG 2 cut(s) 22, 130
DpnI GATC 6 cut(s) 78, 126, 254, 299, 366, 439
DpnII GATC 6 cut(s) 76, 124, 252, 297, 364, 437
DraI TTTAAA 1 cut(s) 18
Eam1104I CTCTTC 1 cut(s) 541
EarI CTCTTC 1 cut(s) 541
EciI GGCGGA 1 cut(s) 97
Eco57I CTGAAG 1 cut(s) 57
EcoRII CCWGG 1 cut(s) 27
Esp3I CGTCTC 1 cut(s) 421
FaeI CATG 2 cut(s) 218, 522
FaiI YATR 7 cut(s) 140, 152, 216, 220, 336, 341, 520
FatI CATG 2 cut(s) 214, 518
FauI CCCGC 1 cut(s) 329
Fnu4HI GCNGC 1 cut(s) 452
Fsp4HI GCNGC 1 cut(s) 452
FspBI CTAG 2 cut(s) 390, 524
GluI GCNGC 1 cut(s) 452
HapII CCGG 2 cut(s) 359, 373
Hin1I GRCGYC 1 cut(s) 414
Hin1II CATG 2 cut(s) 218, 522
HincII GTYRAC 1 cut(s) 461
HindII GTYRAC 1 cut(s) 461
HindIII AAGCTT 2 cut(s) 69, 270
HinfI GANTC 3 cut(s) 117, 211, 491
HpaII CCGG 2 cut(s) 359, 373
HphI GGTGA 2 cut(s) 272, 275
Hpy166II GTNNAC 2 cut(s) 461, 566
Hpy188I TCNGA 3 cut(s) 76, 133, 369
Hpy188III TCNNGA 1 cut(s) 201
Hpy8I GTNNAC 2 cut(s) 461, 566
Hpy99I CGWCG 1 cut(s) 416
HpyCH4III ACNGT 4 cut(s) 50, 110, 310, 503
HpyCH4IV ACGT 3 cut(s) 414, 543, 587
HpyCH4V TGCA 1 cut(s) 145
HpyF3I CTNAG 2 cut(s) 22, 130
HpySE526I ACGT 3 cut(s) 414, 543, 587
Hsp92I GRCGYC 1 cut(s) 414
Hsp92II CATG 2 cut(s) 218, 522
Kzo9I GATC 6 cut(s) 76, 124, 252, 297, 364, 437
LmnI GCTCC 1 cut(s) 322
LpnPI CCDG 7 cut(s) 14, 41, 202, 246, 296, 372, 386
LweI GCATC 1 cut(s) 154
MaeI CTAG 2 cut(s) 390, 524
MaeII ACGT 3 cut(s) 414, 543, 587
MaeIII GTNAC 1 cut(s) 110
MalI GATC 6 cut(s) 78, 126, 254, 299, 366, 439
MboI GATC 6 cut(s) 76, 124, 252, 297, 364, 437
MboII GAAGA 5 cut(s) 107, 110, 216, 216, 528
MflI RGATCY 2 cut(s) 252, 364
MluCI AATT 2 cut(s) 354, 446
MlyI GAGTC 2 cut(s) 220, 500
MmeI TCCRAC 1 cut(s) 69
MnlI CCTC 5 cut(s) 78, 82, 85, 477, 544
MroXI GAANNNNTTC 1 cut(s) 273
MseI TTAA 3 cut(s) 17, 422, 465
MspCI CTTAAG 1 cut(s) 464
MspI CCGG 2 cut(s) 359, 373
MspR9I CCNGG 2 cut(s) 29, 360
MvaI CCWGG 1 cut(s) 29
MvnI CGCG 1 cut(s) 454
NciI CCSGG 1 cut(s) 360
NdeII GATC 6 cut(s) 76, 124, 252, 297, 364, 437
NlaIII CATG 2 cut(s) 218, 522
NlaIV GGNNCC 2 cut(s) 318, 366
NmuCI GTSAC 1 cut(s) 110
PasI CCCWGGG 1 cut(s) 28
PcsI WCGNNNNNNNCGW 1 cut(s) 246
PdmI GAANNNNTTC 1 cut(s) 273
PfeI GAWTC 1 cut(s) 117
PinAI ACCGGT 1 cut(s) 372
PkrI GCNGC 1 cut(s) 453
PleI GAGTC 2 cut(s) 219, 499
PpsI GAGTC 2 cut(s) 219, 499
Psp6I CCWGG 1 cut(s) 27
PspGI CCWGG 1 cut(s) 27
PspN4I GGNNCC 2 cut(s) 318, 366
PsrI GAACNNNNNNTAC 2 cut(s) 390, 422
PsuI RGATCY 2 cut(s) 252, 364
RsaI GTAC 1 cut(s) 408
RsaNI GTAC 1 cut(s) 407
SaqAI TTAA 3 cut(s) 17, 422, 465
SatI GCNGC 1 cut(s) 452
Sau3AI GATC 6 cut(s) 76, 124, 252, 297, 364, 437
SchI GAGTC 2 cut(s) 220, 500
ScrFI CCNGG 2 cut(s) 29, 360
SetI ASST 6 cut(s) 73, 274, 405, 417, 546, 590
SfaNI GCATC 1 cut(s) 154
SfcI CTRYAG 1 cut(s) 334
SmlI CTYRAG 2 cut(s) 464, 488
SmoI CTYRAG 2 cut(s) 464, 488
Sse9I AATT 2 cut(s) 354, 446
SsiI CCGC 3 cut(s) 82, 322, 452
SspMI CTAG 2 cut(s) 390, 524
StyD4I CCNGG 2 cut(s) 27, 358
TaaI ACNGT 4 cut(s) 50, 110, 310, 503
TaiI ACGT 3 cut(s) 417, 546, 590
TaqI TCGA 4 cut(s) 7, 202, 240, 411
TasI AATT 2 cut(s) 354, 446
TatI WGTACW 1 cut(s) 406
TauI GCSGC 1 cut(s) 454
TfiI GAWTC 1 cut(s) 117
Tru1I TTAA 3 cut(s) 17, 422, 465
Tru9I TTAA 3 cut(s) 17, 422, 465
TscAI CASTG 3 cut(s) 196, 315, 433
TseFI GTSAC 1 cut(s) 110
Tsp45I GTSAC 1 cut(s) 110
TspDTI ATGAA 3 cut(s) 266, 282, 507
TspGWI ACGGA 2 cut(s) 496, 551
TspRI CASTG 3 cut(s) 196, 315, 433
Vha464I CTTAAG 1 cut(s) 464
XmnI GAANNNNTTC 1 cut(s) 273
XspI CTAG 2 cut(s) 390, 524
ZraI GACGTC 1 cut(s) 415
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.