Rh2BG282000

F-box FBD LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0000467
Physical Location & Seq
Forward (+)
30958236 .. 30958943
708 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG282000.1

Sequence Viewer

Length: 708 bp
ATGGAATTAAATAGTCTGGACATCTCCGGAATGAGACTGGAGGAGTTGCGAGTCTGGTTTTGTTTTCAAGAGTATATCAATGGAAGTTGGGTCAACATTTTTGCACCGAATCTACAATCATTCTCTTGGGGTTATTCAGGCATTACTGAAAGGTGTTCGATCCAGAGCTTTCCTATGCTCAAAAGATCTTTCATAAAGTCCCCCCTTACAACGAAGAAGATTAATAATAACAGTGTTGTCGATCTTCTTTCTGCTTCATCCCAAGTTGAAGACTTTATAATATCCGATCACTACCTCCAGATTCTATCAGAAATATATTCTGAATTATGCGGTCTACCATTCTCATTTATGAAACTGAAAACCTTGAGAATTGGGAGTCCAATGAAGCAAAGATATATCCCTGGTATGGTATGCCTGTTCAAGAGCTCTCCCGTGGTCCACAACCTCGAGATTTGTTTTTACTCTTACGAAGAAGATGGCAAGTGGAACAACCAATCCTTGGATGATGCCAATTGCAGCCAAGAACAATACTGGGAGACTCAGGGTCAATATTTGAGCCCCTCTCTTAGTCACCTAAAGGTGGTCAGAATTCGCCTTGGTGAAATGATCCCCGAGAGTGCAATCAAATTTGCAAAGTTTGTGCTCAAATATGGAAGAAACCTGCAAAAAATGAGTGTTAGCTTTGATATGAACAAAAGTTGTCTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBD

Protein Analysis

235

Amino Acids

27.17

Weight (kDa)

7.54

Isoelectric Point (pI)

57.58

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000467)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g02550 FvH4_6g26921 FvH4_6g45630
malus_domestica MD01G1113200.v1.1 MD09G1101600.v1.1 MD17G1084600.v1.1
prunus_persica Prupe.3G224400_v2.0.a1 Prupe.3G224500_v2.0.a1 Prupe.3G224600_v2.0.a1
pyrus_communis pycom02g19930 pycom09g00760 pycom09g00770 pycom17g08170
rosa_chinensis RchiOBHm_Chr1g0350511 RchiOBHm_Chr2g0086171 RchiOBHm_Chr2g0117831 RchiOBHm_Chr3g0450391 RchiOBHm_Chr4g0409631 RchiOBHm_Chr5g0039731
rosa_laevigata RLG00000008538 RLG00000018375 RLG00000021415 RLG00000028481 RLG00000033926 RLG00000033937 RLG00000033938 RLG00000033939 RLG00000033941
rosa_multiflora Rmu_sc0000103.1_g000011 Rmu_sc0000330.1_g000009 Rmu_sc0000652.1_g000002 Rmu_sc0001507.1_g000017 Rmu_sc0004020.1_g000010 Rmu_sc0026676.1_g000001 Rmu_ssc0000083.1_g000022 Rmu_ssc0000400.1_g000021
rosa_roxburghii Rroxscaffold_1G00040760 Rroxscaffold_1G00041490 Rroxscaffold_1G00041500 Rroxscaffold_1G00041630 Rroxscaffold_2G00087990 Rroxscaffold_2G00126200 Rroxscaffold_4G00304800 Rroxscaffold_5G00354160 Rroxscaffold_5G00354170
rosa_rugosa Rorug01G0211500 Rorug02G0214300 Rorug02G0496800 Rorug02G0627700 Rorug04G0095600 Rorug05G0181700
rosa_samantha Rh1AG226300 Rh1BG194700 Rh1CG211100 Rh1DG222900 Rh2AG270500 Rh2AG270600 Rh2AG562900 Rh2AG563000 Rh2BG281900 Rh2BG282000 Rh2BG575700 Rh2CG269300 Rh2CG269400 Rh2DG278300 Rh2DG296200 Rh2DG585900 Rh3AG028000 Rh3AG028100 Rh3BG028500 Rh3BG028600 Rh3CG027300 Rh3CG027400 Rh3DG028400 Rh3DG028500 Rh4BG156800 Rh4CG167300 Rh4CG167400 Rh4DG151100 Rh5AG268000 Rh5BG272400 Rh5BG272500 Rh5CG304000 Rh5CG305000 Rh5CG305100 Rh5DG280500
rosa_wichuraiana Rw1G019530 Rw2G021370 Rw4G012860 Rw4G012970 Rw5G025070

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 278
Acc36I ACCTGC 1 cut(s) 669
AccB7I CCANNNNNTGG 1 cut(s) 499
AccI GTMKAC 1 cut(s) 334
AccIII TCCGGA 1 cut(s) 26
AciI CCGC 1 cut(s) 330
AclWI GGATC 2 cut(s) 154, 601
AcsI RAATTY 2 cut(s) 588, 626
AfiI CCNNNNNNNGG 3 cut(s) 406, 499, 580
AgsI TTSAA 3 cut(s) 68, 269, 421
AhdI GACNNNNNGTC 1 cut(s) 543
AjnI CCWGG 1 cut(s) 400
AloI GAACNNNNNNTCC 2 cut(s) 479, 511
AluBI AGCT 3 cut(s) 168, 426, 681
AluI AGCT 3 cut(s) 168, 426, 681
Alw21I GWGCWC 2 cut(s) 428, 645
Alw26I GTCTC 2 cut(s) 28, 530
AlwI GGATC 2 cut(s) 154, 601
Ama87I CYCGRG 2 cut(s) 446, 611
Aor13HI TCCGGA 1 cut(s) 26
ApeKI GCWGC 1 cut(s) 516
ApoI RAATTY 2 cut(s) 588, 626
AseI ATTAAT 1 cut(s) 222
AspS9I GGNCC 1 cut(s) 436
AsuHPI GGTGA 2 cut(s) 563, 611
AvaI CYCGRG 2 cut(s) 446, 611
AvaII GGWCC 1 cut(s) 436
BanII GRGCYC 2 cut(s) 428, 560
BbsI GAAGAC 1 cut(s) 276
Bbv12I GWGCWC 2 cut(s) 428, 645
BbvI GCAGC 1 cut(s) 528
BccI CCATC 1 cut(s) 470
BciT130I CCWGG 1 cut(s) 402
BcoDI GTCTC 2 cut(s) 28, 530
BfuAI ACCTGC 1 cut(s) 669
BglII AGATCT 1 cut(s) 185
BisI GCNGC 1 cut(s) 517
BlsI GCNGC 1 cut(s) 518
Bme1390I CCNGG 1 cut(s) 402
Bme18I GGWCC 1 cut(s) 436
BmeRI GACNNNNNGTC 1 cut(s) 543
BmeT110I CYCGRG 2 cut(s) 446, 611
BmgT120I GGNCC 1 cut(s) 436
BmrFI CCNGG 1 cut(s) 402
BmrI ACTGGG 1 cut(s) 541
BmsI GCATC 1 cut(s) 496
BmuI ACTGGG 1 cut(s) 541
BpiI GAAGAC 1 cut(s) 276
BplI GAGNNNNNCTC 2 cut(s) 547, 579
BpmI CTGGAG 2 cut(s) 59, 281
BpuEI CTTGAG 1 cut(s) 385
BsaJI CCNNGG 4 cut(s) 400, 432, 498, 595
BsaWI WCCGGW 1 cut(s) 26
Bsc4I CCNNNNNNNGG 3 cut(s) 406, 499, 580
Bse1I ACTGG 2 cut(s) 42, 536
BseAI TCCGGA 1 cut(s) 26
BseBI CCWGG 1 cut(s) 402
BseDI CCNNGG 4 cut(s) 400, 432, 498, 595
BseGI GGATG 2 cut(s) 257, 508
BseLI CCNNNNNNNGG 3 cut(s) 406, 499, 580
BseMII CTCAG 1 cut(s) 554
BseNI ACTGG 2 cut(s) 42, 536
BseRI GAGGAG 1 cut(s) 56
BseXI GCAGC 1 cut(s) 528
BsiHKAI GWGCWC 2 cut(s) 428, 645
BsiHKCI CYCGRG 2 cut(s) 446, 611
BsiSI CCGG 1 cut(s) 27
BslFI GGGAC 1 cut(s) 184
BslI CCNNNNNNNGG 3 cut(s) 406, 499, 580
BsmAI GTCTC 2 cut(s) 28, 530
BsmFI GGGAC 1 cut(s) 184
BsoBI CYCGRG 2 cut(s) 446, 611
Bsp1286I GDGCHC 3 cut(s) 428, 560, 645
Bsp13I TCCGGA 1 cut(s) 26
Bsp143I GATC 5 cut(s) 159, 185, 241, 286, 606
BspACI CCGC 1 cut(s) 330
BspCNI CTCAG 1 cut(s) 553
BspEI TCCGGA 1 cut(s) 26
BspMI ACCTGC 1 cut(s) 669
BspPI GGATC 2 cut(s) 154, 601
BsrI ACTGG 2 cut(s) 42, 536
BssECI CCNNGG 4 cut(s) 400, 432, 498, 595
BssMI GATC 5 cut(s) 159, 185, 241, 286, 606
BssT1I CCWWGG 2 cut(s) 498, 595
Bst2UI CCWGG 1 cut(s) 402
Bst4CI ACNGT 1 cut(s) 233
BstDEI CTNAG 2 cut(s) 540, 566
BstDSI CCRYGG 1 cut(s) 432
BstF5I GGATG 2 cut(s) 257, 508
BstKTI GATC 5 cut(s) 162, 188, 244, 289, 609
BstMAI GTCTC 2 cut(s) 28, 530
BstMBI GATC 5 cut(s) 159, 185, 241, 286, 606
BstNI CCWGG 1 cut(s) 402
BstSCI CCNGG 1 cut(s) 400
BstV1I GCAGC 1 cut(s) 528
BstV2I GAAGAC 1 cut(s) 276
BstX2I RGATCY 1 cut(s) 185
BstYI RGATCY 1 cut(s) 185
BtgI CCRYGG 1 cut(s) 432
BtsCI GGATG 2 cut(s) 257, 508
BtsIMutI CAGTG 1 cut(s) 238
BveI ACCTGC 1 cut(s) 669
Cfr13I GGNCC 1 cut(s) 436
CviJI RGCY 5 cut(s) 168, 426, 519, 558, 681
CviKI_1 RGCY 5 cut(s) 168, 426, 519, 558, 681
DdeI CTNAG 2 cut(s) 540, 566
DpnI GATC 5 cut(s) 161, 187, 243, 288, 608
DpnII GATC 5 cut(s) 159, 185, 241, 286, 606
DriI GACNNNNNGTC 1 cut(s) 543
Eam1105I GACNNNNNGTC 1 cut(s) 543
Ecl136II GAGCTC 1 cut(s) 426
Eco130I CCWWGG 2 cut(s) 498, 595
Eco24I GRGCYC 2 cut(s) 428, 560
Eco47I GGWCC 1 cut(s) 436
Eco53kI GAGCTC 1 cut(s) 426
Eco88I CYCGRG 2 cut(s) 446, 611
EcoICRI GAGCTC 1 cut(s) 426
EcoRI GAATTC 1 cut(s) 588
EcoRII CCWGG 1 cut(s) 400
EcoT14I CCWWGG 2 cut(s) 498, 595
EcoT38I GRGCYC 2 cut(s) 428, 560
ErhI CCWWGG 2 cut(s) 498, 595
FaqI GGGAC 1 cut(s) 184
FblI GTMKAC 1 cut(s) 334
Fnu4HI GCNGC 1 cut(s) 517
FokI GGATG 2 cut(s) 244, 515
FriOI GRGCYC 2 cut(s) 428, 560
Fsp4HI GCNGC 1 cut(s) 517
GluI GCNGC 1 cut(s) 517
GsuI CTGGAG 2 cut(s) 59, 281
HapII CCGG 1 cut(s) 27
HincII GTYRAC 1 cut(s) 94
HindII GTYRAC 1 cut(s) 94
HinfI GANTC 5 cut(s) 51, 109, 301, 376, 538
HpaII CCGG 1 cut(s) 27
HphI GGTGA 2 cut(s) 563, 611
Hpy166II GTNNAC 3 cut(s) 94, 335, 439
Hpy188I TCNGA 4 cut(s) 286, 310, 322, 587
Hpy188III TCNNGA 7 cut(s) 17, 27, 68, 163, 298, 421, 448
Hpy8I GTNNAC 3 cut(s) 94, 335, 439
HpyCH4III ACNGT 1 cut(s) 233
HpyCH4V TGCA 5 cut(s) 104, 516, 620, 632, 664
HpyF3I CTNAG 2 cut(s) 540, 566
Kpn2I TCCGGA 1 cut(s) 26
Kzo9I GATC 5 cut(s) 159, 185, 241, 286, 606
Lsp1109I GCAGC 1 cut(s) 528
LweI GCATC 1 cut(s) 496
MaeIII GTNAC 1 cut(s) 569
MalI GATC 5 cut(s) 161, 187, 243, 288, 608
MboI GATC 5 cut(s) 159, 185, 241, 286, 606
MboII GAAGA 7 cut(s) 226, 229, 236, 281, 482, 485, 666
MfeI CAATTG 1 cut(s) 511
MflI RGATCY 1 cut(s) 185
MhlI GDGCHC 3 cut(s) 428, 560, 645
MluCI AATT 6 cut(s) 5, 323, 369, 511, 588, 626
MlyI GAGTC 3 cut(s) 60, 385, 532
MnlI CCTC 4 cut(s) 34, 305, 455, 571
MroI TCCGGA 1 cut(s) 26
MseI TTAA 2 cut(s) 8, 222
MspI CCGG 1 cut(s) 27
MspR9I CCNGG 1 cut(s) 402
MunI CAATTG 1 cut(s) 511
MvaI CCWGG 1 cut(s) 402
NdeII GATC 5 cut(s) 159, 185, 241, 286, 606
NmuCI GTSAC 1 cut(s) 569
PaeR7I CTCGAG 1 cut(s) 446
PfeI GAWTC 2 cut(s) 109, 301
PflMI CCANNNNNTGG 1 cut(s) 499
PkrI GCNGC 1 cut(s) 518
PleI GAGTC 3 cut(s) 59, 384, 532
PpsI GAGTC 3 cut(s) 59, 384, 532
PshBI ATTAAT 1 cut(s) 222
PsiI TTATAA 1 cut(s) 278
Psp124BI GAGCTC 1 cut(s) 428
Psp6I CCWGG 1 cut(s) 400
PspGI CCWGG 1 cut(s) 400
PspPI GGNCC 1 cut(s) 436
PsuI RGATCY 1 cut(s) 185
SacI GAGCTC 1 cut(s) 428
SaqAI TTAA 2 cut(s) 8, 222
SatI GCNGC 1 cut(s) 517
Sau3AI GATC 5 cut(s) 159, 185, 241, 286, 606
Sau96I GGNCC 1 cut(s) 436
SchI GAGTC 3 cut(s) 60, 385, 532
ScrFI CCNGG 1 cut(s) 402
SduI GDGCHC 3 cut(s) 428, 560, 645
SfaNI GCATC 1 cut(s) 496
Sfr274I CTCGAG 1 cut(s) 446
SinI GGWCC 1 cut(s) 436
SlaI CTCGAG 1 cut(s) 446
SmlI CTYRAG 2 cut(s) 364, 446
SmoI CTYRAG 2 cut(s) 364, 446
Sse9I AATT 6 cut(s) 5, 323, 369, 511, 588, 626
SsiI CCGC 1 cut(s) 330
SspI AATATT 1 cut(s) 551
SstI GAGCTC 1 cut(s) 428
StyD4I CCNGG 1 cut(s) 400
StyI CCWWGG 2 cut(s) 498, 595
TaaI ACNGT 1 cut(s) 233
TaqI TCGA 3 cut(s) 158, 240, 447
TasI AATT 6 cut(s) 5, 323, 369, 511, 588, 626
TfiI GAWTC 2 cut(s) 109, 301
Tru1I TTAA 2 cut(s) 8, 222
Tru9I TTAA 2 cut(s) 8, 222
TscAI CASTG 1 cut(s) 238
TseFI GTSAC 1 cut(s) 569
TseI GCWGC 1 cut(s) 516
Tsp45I GTSAC 1 cut(s) 569
TspDTI ATGAA 5 cut(s) 181, 246, 365, 398, 704
TspRI CASTG 1 cut(s) 238
Van91I CCANNNNNTGG 1 cut(s) 499
VpaK11BI GGWCC 1 cut(s) 436
VspI ATTAAT 1 cut(s) 222
XapI RAATTY 2 cut(s) 588, 626
XhoI CTCGAG 1 cut(s) 446
XmiI GTMKAC 1 cut(s) 334
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.