Prupe.3G224600_v2.0.a1

F-box FBD LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
OG0000467
Physical Location & Seq
Forward (+)
22400618 .. 22402273
1656 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G224600.1

Sequence Viewer

Length: 873 bp
ATGGAAACCAAAGCTGCAAAGAAGAGAAGGCTGATAGAGGAAGAAAACGAACGCAATGGGCGAGGCAGGGACAGATTCAGTGATCTTCCAAAAGAAATATCGAACCATATATTCTCCTTCTTACCCATGAAAGCCATCGCACAAGTAAGTTTTACATTGAAAAGGTGGAGATCGCTGTGGGATTCCTTTCCTATTCTCGACTTCTCCGAGGTCTGTCCTTTCACATCCCAGAAACTGACTATAGAGTCTTGTAGAAGCATGAATCAGCTCGGAATTTTCTGTGAAGACCTCAAGGATCTACAAGTTTGCGGAATGGAAAAAATTTGCCTGGACATATCTGGAATGGGACTAGAGAGGTTGGCTGCTGTCAAACTTCATTTAACAAGTGTCATCAGCAATAGCTGCGTTAACATTTTCGTTCCCAATACACAAACTTTTCAATGGGGGCCTGATGAGGTTGCTGAGAAAGGTTTGGTACACTTCTGGCTTCCAGTGAATGATGCCAAAGTGAAGACTCATACTGTAGTCGTTCTTTCCGCATTATCCCAAGCTGAAAAACTTACTATATCCTTTCAGATTCTTGAGAGTTTATCGAAAATATATTTCGAAGGTGGTCTACCATTTTCATTTGTGAACCTCAAGACTTTGGAAATTATTACTGCTGGTTTGAGAAAATCGGATTTCCTGGGTATAGCATGCTTATTCAAGAGCTCTCCCATAGTCGAAGGGCTAAAAATTGTGATTAGTCCTATTCATAGACCACAGGATGATAAATGGAACGACATCTTGTTGGACAATGCCCTCTGGAGTGAAGAGCAATTCTGGGAATCTCAAGCTCAAACTTTGAACTCCTTCCTTTGTCACATTAAGAAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBD

Protein Analysis

291

Amino Acids

33.11

Weight (kDa)

6.61

Isoelectric Point (pI)

54.21

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000467)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g02550 FvH4_6g26921 FvH4_6g45630
malus_domestica MD01G1113200.v1.1 MD09G1101600.v1.1 MD17G1084600.v1.1
prunus_persica Prupe.3G224400_v2.0.a1 Prupe.3G224500_v2.0.a1 Prupe.3G224600_v2.0.a1
pyrus_communis pycom02g19930 pycom09g00760 pycom09g00770 pycom17g08170
rosa_chinensis RchiOBHm_Chr1g0350511 RchiOBHm_Chr2g0086171 RchiOBHm_Chr2g0117831 RchiOBHm_Chr3g0450391 RchiOBHm_Chr4g0409631 RchiOBHm_Chr5g0039731
rosa_laevigata RLG00000008538 RLG00000018375 RLG00000021415 RLG00000028481 RLG00000033926 RLG00000033937 RLG00000033938 RLG00000033939 RLG00000033941
rosa_multiflora Rmu_sc0000103.1_g000011 Rmu_sc0000330.1_g000009 Rmu_sc0000652.1_g000002 Rmu_sc0001507.1_g000017 Rmu_sc0004020.1_g000010 Rmu_sc0026676.1_g000001 Rmu_ssc0000083.1_g000022 Rmu_ssc0000400.1_g000021
rosa_roxburghii Rroxscaffold_1G00040760 Rroxscaffold_1G00041490 Rroxscaffold_1G00041500 Rroxscaffold_1G00041630 Rroxscaffold_2G00087990 Rroxscaffold_2G00126200 Rroxscaffold_4G00304800 Rroxscaffold_5G00354160 Rroxscaffold_5G00354170
rosa_rugosa Rorug01G0211500 Rorug02G0214300 Rorug02G0496800 Rorug02G0627700 Rorug04G0095600 Rorug05G0181700
rosa_samantha Rh1AG226300 Rh1BG194700 Rh1CG211100 Rh1DG222900 Rh2AG270500 Rh2AG270600 Rh2AG562900 Rh2AG563000 Rh2BG281900 Rh2BG282000 Rh2BG575700 Rh2CG269300 Rh2CG269400 Rh2DG278300 Rh2DG296200 Rh2DG585900 Rh3AG028000 Rh3AG028100 Rh3BG028500 Rh3BG028600 Rh3CG027300 Rh3CG027400 Rh3DG028400 Rh3DG028500 Rh4BG156800 Rh4CG167300 Rh4CG167400 Rh4DG151100 Rh5AG268000 Rh5BG272400 Rh5BG272500 Rh5CG304000 Rh5CG305000 Rh5CG305100 Rh5DG280500
rosa_wichuraiana Rw1G019530 Rw2G021370 Rw4G012860 Rw4G012970 Rw5G025070

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 244
AccI GTMKAC 1 cut(s) 616
AciI CCGC 2 cut(s) 309, 537
AclWI GGATC 1 cut(s) 303
AcsI RAATTY 2 cut(s) 273, 321
AfaI GTAC 1 cut(s) 477
AgsI TTSAA 4 cut(s) 160, 440, 706, 847
AjnI CCWGG 2 cut(s) 327, 684
AluBI AGCT 6 cut(s) 14, 268, 402, 551, 711, 836
AluI AGCT 6 cut(s) 14, 268, 402, 551, 711, 836
Alw21I GWGCWC 1 cut(s) 713
AlwI GGATC 1 cut(s) 303
AlwNI CAGNNNCTG 1 cut(s) 235
AoxI GGCC 1 cut(s) 446
ApeKI GCWGC 3 cut(s) 14, 362, 402
ApoI RAATTY 2 cut(s) 273, 321
Asp700I GAANNNNTTC 1 cut(s) 851
AspS9I GGNCC 1 cut(s) 446
AsuII TTCGAA 1 cut(s) 606
BanII GRGCYC 1 cut(s) 713
BarI GAAGNNNNNNTAC 2 cut(s) 600, 632
BbsI GAAGAC 2 cut(s) 291, 518
Bbv12I GWGCWC 1 cut(s) 713
BbvI GCAGC 2 cut(s) 349, 389
BccI CCATC 1 cut(s) 143
BciT130I CCWGG 2 cut(s) 329, 686
BfaI CTAG 1 cut(s) 350
BfmI CTRYAG 2 cut(s) 240, 522
BisI GCNGC 3 cut(s) 15, 363, 403
BlsI GCNGC 3 cut(s) 16, 364, 404
Bme1390I CCNGG 2 cut(s) 329, 686
BmgT120I GGNCC 1 cut(s) 446
BmiI GGNNCC 1 cut(s) 447
BmrFI CCNGG 2 cut(s) 329, 686
BmsI GCATC 1 cut(s) 490
BpiI GAAGAC 2 cut(s) 291, 518
BpmI CTGGAG 1 cut(s) 826
Bpu14I TTCGAA 1 cut(s) 606
BpuEI CTTGAG 4 cut(s) 275, 602, 623, 816
BsaJI CCNNGG 2 cut(s) 207, 685
Bse1I ACTGG 1 cut(s) 491
Bse3DI GCAATG 1 cut(s) 61
BseBI CCWGG 2 cut(s) 329, 686
BseDI CCNNGG 2 cut(s) 207, 685
BseGI GGATG 2 cut(s) 224, 772
BseMI GCAATG 1 cut(s) 61
BseMII CTCAG 1 cut(s) 453
BseNI ACTGG 1 cut(s) 491
BseXI GCAGC 2 cut(s) 349, 389
BshFI GGCC 1 cut(s) 448
BsiHKAI GWGCWC 1 cut(s) 713
BslFI GGGAC 2 cut(s) 83, 360
BsmFI GGGAC 2 cut(s) 83, 360
BsnI GGCC 1 cut(s) 448
Bsp119I TTCGAA 1 cut(s) 606
Bsp1286I GDGCHC 1 cut(s) 713
Bsp143I GATC 3 cut(s) 82, 170, 295
BspACI CCGC 2 cut(s) 309, 537
BspANI GGCC 1 cut(s) 448
BspCNI CTCAG 1 cut(s) 454
BspLI GGNNCC 1 cut(s) 447
BspPI GGATC 1 cut(s) 303
BspQI GCTCTTC 1 cut(s) 807
BspT104I TTCGAA 1 cut(s) 606
BsrDI GCAATG 1 cut(s) 61
BsrI ACTGG 1 cut(s) 491
BssECI CCNNGG 2 cut(s) 207, 685
BssMI GATC 3 cut(s) 82, 170, 295
Bst2UI CCWGG 2 cut(s) 329, 686
Bst4CI ACNGT 1 cut(s) 523
Bst6I CTCTTC 2 cut(s) 17, 807
BstAPI GCANNNNNTGC 1 cut(s) 402
BstBI TTCGAA 1 cut(s) 606
BstC8I GCNNGC 1 cut(s) 697
BstDEI CTNAG 1 cut(s) 462
BstF5I GGATG 2 cut(s) 224, 772
BstKTI GATC 3 cut(s) 85, 173, 298
BstMBI GATC 3 cut(s) 82, 170, 295
BstMWI GCNNNNNNNGC 1 cut(s) 402
BstNI CCWGG 2 cut(s) 329, 686
BstNSI RCATGY 1 cut(s) 699
BstSCI CCNGG 2 cut(s) 327, 684
BstSFI CTRYAG 2 cut(s) 240, 522
BstV1I GCAGC 2 cut(s) 349, 389
BstV2I GAAGAC 2 cut(s) 291, 518
BstX2I RGATCY 1 cut(s) 295
BstYI RGATCY 1 cut(s) 295
BsuRI GGCC 1 cut(s) 448
BtgZI GCGATG 1 cut(s) 121
BtsCI GGATG 2 cut(s) 224, 772
BtsIMutI CAGTG 2 cut(s) 85, 498
Cac8I GCNNGC 1 cut(s) 697
CaiI CAGNNNCTG 1 cut(s) 235
Cfr13I GGNCC 1 cut(s) 446
Csp6I GTAC 1 cut(s) 476
CviAII CATG 3 cut(s) 127, 259, 696
CviQI GTAC 1 cut(s) 476
DdeI CTNAG 1 cut(s) 462
DpnI GATC 3 cut(s) 84, 172, 297
DpnII GATC 3 cut(s) 82, 170, 295
DrdI GACNNNNNNGTC 1 cut(s) 244
DseDI GACNNNNNNGTC 1 cut(s) 244
Eam1104I CTCTTC 2 cut(s) 17, 807
EarI CTCTTC 2 cut(s) 17, 807
Ecl136II GAGCTC 1 cut(s) 711
Eco24I GRGCYC 1 cut(s) 713
Eco53kI GAGCTC 1 cut(s) 711
EcoICRI GAGCTC 1 cut(s) 711
EcoO109I RGGNCCY 1 cut(s) 446
EcoRII CCWGG 2 cut(s) 327, 684
EcoT38I GRGCYC 1 cut(s) 713
FaeI CATG 3 cut(s) 130, 262, 699
FaqI GGGAC 2 cut(s) 83, 360
FatI CATG 3 cut(s) 126, 258, 695
FblI GTMKAC 1 cut(s) 616
Fnu4HI GCNGC 3 cut(s) 15, 363, 403
FokI GGATG 2 cut(s) 211, 779
FriOI GRGCYC 1 cut(s) 713
Fsp4HI GCNGC 3 cut(s) 15, 363, 403
FspBI CTAG 1 cut(s) 350
GluI GCNGC 3 cut(s) 15, 363, 403
GsuI CTGGAG 1 cut(s) 826
HaeIII GGCC 1 cut(s) 448
Hin1II CATG 3 cut(s) 130, 262, 699
HincII GTYRAC 1 cut(s) 409
HindII GTYRAC 1 cut(s) 409
HinfI GANTC 7 cut(s) 75, 182, 245, 262, 514, 577, 827
HpaI GTTAAC 1 cut(s) 409
Hpy166II GTNNAC 4 cut(s) 409, 478, 617, 634
Hpy188I TCNGA 4 cut(s) 208, 272, 576, 679
Hpy188III TCNNGA 6 cut(s) 197, 339, 581, 640, 706, 805
Hpy8I GTNNAC 4 cut(s) 409, 478, 617, 634
HpyAV CCTTC 5 cut(s) 21, 127, 602, 719, 862
HpyCH4III ACNGT 1 cut(s) 523
HpyCH4V TGCA 1 cut(s) 17
HpyF10VI GCNNNNNNNGC 1 cut(s) 402
HpyF3I CTNAG 1 cut(s) 462
Hsp92II CATG 3 cut(s) 130, 262, 699
KspAI GTTAAC 1 cut(s) 409
Kzo9I GATC 3 cut(s) 82, 170, 295
LguI GCTCTTC 1 cut(s) 807
Lsp1109I GCAGC 2 cut(s) 349, 389
LweI GCATC 1 cut(s) 490
MaeI CTAG 1 cut(s) 350
MaeIII GTNAC 1 cut(s) 860
MalI GATC 3 cut(s) 84, 172, 297
MboI GATC 3 cut(s) 82, 170, 295
MboII GAAGA 6 cut(s) 34, 53, 77, 296, 523, 824
MflI RGATCY 1 cut(s) 295
MhlI GDGCHC 1 cut(s) 713
MluCI AATT 5 cut(s) 273, 321, 651, 735, 818
MlyI GAGTC 2 cut(s) 254, 508
MmeI TCCRAC 1 cut(s) 771
MnlI CCTC 8 cut(s) 31, 56, 202, 299, 348, 448, 647, 812
MroXI GAANNNNTTC 1 cut(s) 851
MseI TTAA 3 cut(s) 380, 408, 867
MspR9I CCNGG 2 cut(s) 329, 686
MvaI CCWGG 2 cut(s) 329, 686
MwoI GCNNNNNNNGC 1 cut(s) 402
NdeII GATC 3 cut(s) 82, 170, 295
NlaIII CATG 3 cut(s) 130, 262, 699
NlaIV GGNNCC 1 cut(s) 447
NmuCI GTSAC 1 cut(s) 860
NspI RCATGY 1 cut(s) 699
NspV TTCGAA 1 cut(s) 606
PaeI GCATGC 1 cut(s) 699
PciSI GCTCTTC 1 cut(s) 807
PcsI WCGNNNNNNNCGW 2 cut(s) 58, 204
PdmI GAANNNNTTC 1 cut(s) 851
PfeI GAWTC 5 cut(s) 75, 182, 262, 577, 827
PkrI GCNGC 3 cut(s) 16, 364, 404
PleI GAGTC 2 cut(s) 253, 508
PpsI GAGTC 2 cut(s) 253, 508
Psp124BI GAGCTC 1 cut(s) 713
Psp6I CCWGG 2 cut(s) 327, 684
PspGI CCWGG 2 cut(s) 327, 684
PspN4I GGNNCC 1 cut(s) 447
PspPI GGNCC 1 cut(s) 446
PstNI CAGNNNCTG 1 cut(s) 235
PsuI RGATCY 1 cut(s) 295
RsaI GTAC 1 cut(s) 477
RsaNI GTAC 1 cut(s) 476
SacI GAGCTC 1 cut(s) 713
SapI GCTCTTC 1 cut(s) 807
SaqAI TTAA 3 cut(s) 380, 408, 867
SatI GCNGC 3 cut(s) 15, 363, 403
Sau3AI GATC 3 cut(s) 82, 170, 295
Sau96I GGNCC 1 cut(s) 446
SchI GAGTC 2 cut(s) 254, 508
ScrFI CCNGG 2 cut(s) 329, 686
SduI GDGCHC 1 cut(s) 713
SfaNI GCATC 1 cut(s) 490
SfcI CTRYAG 2 cut(s) 240, 522
SfuI TTCGAA 1 cut(s) 606
SmlI CTYRAG 4 cut(s) 290, 581, 638, 831
SmoI CTYRAG 4 cut(s) 290, 581, 638, 831
SphI GCATGC 1 cut(s) 699
Sse9I AATT 5 cut(s) 273, 321, 651, 735, 818
SsiI CCGC 2 cut(s) 309, 537
SspMI CTAG 1 cut(s) 350
SstI GAGCTC 1 cut(s) 713
StyD4I CCNGG 2 cut(s) 327, 684
TaaI ACNGT 1 cut(s) 523
TaqI TCGA 5 cut(s) 101, 198, 593, 606, 723
TasI AATT 5 cut(s) 273, 321, 651, 735, 818
TfiI GAWTC 5 cut(s) 75, 182, 262, 577, 827
Tru1I TTAA 3 cut(s) 380, 408, 867
Tru9I TTAA 3 cut(s) 380, 408, 867
TscAI CASTG 2 cut(s) 85, 498
TseFI GTSAC 1 cut(s) 860
TseI GCWGC 3 cut(s) 14, 362, 402
Tsp45I GTSAC 1 cut(s) 860
TspDTI ATGAA 5 cut(s) 143, 275, 365, 615, 743
TspRI CASTG 2 cut(s) 85, 498
XapI RAATTY 2 cut(s) 273, 321
XceI RCATGY 1 cut(s) 699
XmiI GTMKAC 1 cut(s) 616
XmnI GAANNNNTTC 1 cut(s) 851
XspI CTAG 1 cut(s) 350
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.