Rroxscaffold_1G00041490

F-box FBD LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0000467
Physical Location & Seq
Forward (+)
59383801 .. 59384982
1182 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00041490.1

Sequence Viewer

Length: 771 bp
ATGAGTTTGCTTCTTGTTACTATGAAGGGGAGCCAGTCGAGAAATGCTGGAAACTTATCCTCACCAATATTTGGTCAACCTCTATTGAAAAAAGAAAAAAACTTGGTCAACCATAACGAATACTTGACCTCAAAATACAACGATAACACGGAGATCAATGTTGCTTTGCCACATAATCGGCGATCCCCCGCATCGGTGCACCGATGCTCCGTCGACGAGACCGGCGGTGATCTTTCGGATCGGTGGAGTGAGGTGGAAGAAAACAAGCATGAGAAGAGAAACAAGACGGGTTCATCCGACGTAATCGGTGATCTCCCGCATGATATGTTGCATTTCATACTCTCATTCTTGCCTTTCAAATACGTTGTGCAAACTAGTGTCTTATCTCGAAGATGGAGTCATGTATGGTCTTCCTATCCCATCTTTGACTTCTACGAAATTTTTACCGGTAATGAAGTCGAACATCACCGTACAAGAGCAAGCATCATCAACACGGTATTGGCTCGCTATCGTCACAACGAAAACTATAACATGATGTACCCATGCCAAAAAATTCCCTTGCCAAGCGGTAGACTAGGTCAATTTTGTATAGTTGGGGAGAATCCAAACAATTCTTGTTTGGCTAGGGTTGAGGAACTTGTGCTCGATGTCTCGTTGAGTAGTGCAAATACATCTAATTTGCCTCGATGTCAACTTAAGTGCCACTCATTAAGGAGTAGTAGCTGTGGGAGTTCAAAGGCATGGCTAGGGTTTTCCTCTACTTATGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBD

Protein Analysis

256

Amino Acids

29.02

Weight (kDa)

8.65

Isoelectric Point (pI)

57.32

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 104 - 141 7.7e-09 F-box domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000467)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g02550 FvH4_6g26921 FvH4_6g45630
malus_domestica MD01G1113200.v1.1 MD09G1101600.v1.1 MD17G1084600.v1.1
prunus_persica Prupe.3G224400_v2.0.a1 Prupe.3G224500_v2.0.a1 Prupe.3G224600_v2.0.a1
pyrus_communis pycom02g19930 pycom09g00760 pycom09g00770 pycom17g08170
rosa_chinensis RchiOBHm_Chr1g0350511 RchiOBHm_Chr2g0086171 RchiOBHm_Chr2g0117831 RchiOBHm_Chr3g0450391 RchiOBHm_Chr4g0409631 RchiOBHm_Chr5g0039731
rosa_laevigata RLG00000008538 RLG00000018375 RLG00000021415 RLG00000028481 RLG00000033926 RLG00000033937 RLG00000033938 RLG00000033939 RLG00000033941
rosa_multiflora Rmu_sc0000103.1_g000011 Rmu_sc0000330.1_g000009 Rmu_sc0000652.1_g000002 Rmu_sc0001507.1_g000017 Rmu_sc0004020.1_g000010 Rmu_sc0026676.1_g000001 Rmu_ssc0000083.1_g000022 Rmu_ssc0000400.1_g000021
rosa_roxburghii Rroxscaffold_1G00040760 Rroxscaffold_1G00041490 Rroxscaffold_1G00041500 Rroxscaffold_1G00041630 Rroxscaffold_2G00087990 Rroxscaffold_2G00126200 Rroxscaffold_4G00304800 Rroxscaffold_5G00354160 Rroxscaffold_5G00354170
rosa_rugosa Rorug01G0211500 Rorug02G0214300 Rorug02G0496800 Rorug02G0627700 Rorug04G0095600 Rorug05G0181700
rosa_samantha Rh1AG226300 Rh1BG194700 Rh1CG211100 Rh1DG222900 Rh2AG270500 Rh2AG270600 Rh2AG562900 Rh2AG563000 Rh2BG281900 Rh2BG282000 Rh2BG575700 Rh2CG269300 Rh2CG269400 Rh2DG278300 Rh2DG296200 Rh2DG585900 Rh3AG028000 Rh3AG028100 Rh3BG028500 Rh3BG028600 Rh3CG027300 Rh3CG027400 Rh3DG028400 Rh3DG028500 Rh4BG156800 Rh4CG167300 Rh4CG167400 Rh4DG151100 Rh5AG268000 Rh5BG272400 Rh5BG272500 Rh5CG304000 Rh5CG305000 Rh5CG305100 Rh5DG280500
rosa_wichuraiana Rw1G019530 Rw2G021370 Rw4G012860 Rw4G012970 Rw5G025070

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 71
AccI GTMKAC 2 cut(s) 213, 571
AciI CCGC 4 cut(s) 189, 225, 317, 567
AclWI GGATC 2 cut(s) 177, 246
AcsI RAATTY 2 cut(s) 438, 552
AfaI GTAC 2 cut(s) 472, 539
AfiI CCNNNNNNNGG 2 cut(s) 71, 193
AflII CTTAAG 1 cut(s) 695
AgeI ACCGGT 1 cut(s) 446
AgsI TTSAA 3 cut(s) 88, 358, 735
AhlI ACTAGT 1 cut(s) 374
AluBI AGCT 1 cut(s) 723
AluI AGCT 1 cut(s) 723
Alw21I GWGCWC 2 cut(s) 201, 645
Alw26I GTCTC 2 cut(s) 212, 655
Alw44I GTGCAC 1 cut(s) 197
AlwI GGATC 2 cut(s) 177, 246
ApaLI GTGCAC 1 cut(s) 197
ApoI RAATTY 2 cut(s) 438, 552
ArsI GACNNNNNNTTYG 2 cut(s) 382, 414
AsiGI ACCGGT 1 cut(s) 446
AsuHPI GGTGA 4 cut(s) 54, 239, 320, 458
BaeGI GKGCMC 1 cut(s) 201
BbsI GAAGAC 1 cut(s) 402
Bbv12I GWGCWC 2 cut(s) 201, 645
BccI CCATC 2 cut(s) 387, 428
BcoDI GTCTC 2 cut(s) 212, 655
BcuI ACTAGT 1 cut(s) 374
BfaI CTAG 4 cut(s) 375, 575, 624, 746
BfrI CTTAAG 1 cut(s) 695
BmiI GGNNCC 1 cut(s) 32
BmsI GCATC 3 cut(s) 194, 200, 492
BpiI GAAGAC 1 cut(s) 402
BsaI GGTCTC 1 cut(s) 212
BsaWI WCCGGW 1 cut(s) 446
BsaXI ACNNNNNCTCC 2 cut(s) 191, 221
Bsc4I CCNNNNNNNGG 2 cut(s) 71, 193
Bse118I RCCGGY 2 cut(s) 221, 446
Bse1I ACTGG 1 cut(s) 34
BseGI GGATG 1 cut(s) 293
BseLI CCNNNNNNNGG 2 cut(s) 71, 193
BseNI ACTGG 1 cut(s) 34
BseSI GKGCMC 1 cut(s) 201
BshTI ACCGGT 1 cut(s) 446
BsiHKAI GWGCWC 2 cut(s) 201, 645
BsiSI CCGG 2 cut(s) 222, 447
BslI CCNNNNNNNGG 2 cut(s) 71, 193
BsmAI GTCTC 2 cut(s) 212, 655
Bso31I GGTCTC 1 cut(s) 212
Bsp1286I GDGCHC 2 cut(s) 201, 645
Bsp143I GATC 5 cut(s) 153, 182, 229, 238, 310
BspACI CCGC 4 cut(s) 189, 225, 317, 567
BspLI GGNNCC 1 cut(s) 32
BspPI GGATC 2 cut(s) 177, 246
BspTI CTTAAG 1 cut(s) 695
BspTNI GGTCTC 1 cut(s) 212
BsrFI RCCGGY 2 cut(s) 221, 446
BsrI ACTGG 1 cut(s) 34
BssAI RCCGGY 2 cut(s) 221, 446
BssMI GATC 5 cut(s) 153, 182, 229, 238, 310
Bst4CI ACNGT 2 cut(s) 470, 496
Bst6I CTCTTC 1 cut(s) 269
BstAFI CTTAAG 1 cut(s) 695
BstC8I GCNNGC 2 cut(s) 481, 505
BstF5I GGATG 1 cut(s) 293
BstKTI GATC 5 cut(s) 156, 185, 232, 241, 313
BstMAI GTCTC 2 cut(s) 212, 655
BstMBI GATC 5 cut(s) 153, 182, 229, 238, 310
BstSLI GKGCMC 1 cut(s) 201
BstV2I GAAGAC 1 cut(s) 402
BtsCI GGATG 1 cut(s) 293
Cac8I GCNNGC 2 cut(s) 481, 505
Cfr10I RCCGGY 2 cut(s) 221, 446
Csp6I GTAC 2 cut(s) 471, 538
CspAI ACCGGT 1 cut(s) 446
CviAII CATG 6 cut(s) 269, 320, 401, 532, 543, 741
CviJI RGCY 5 cut(s) 33, 503, 623, 723, 745
CviKI_1 RGCY 5 cut(s) 33, 503, 623, 723, 745
CviQI GTAC 2 cut(s) 471, 538
DpnI GATC 5 cut(s) 155, 184, 231, 240, 312
DpnII GATC 5 cut(s) 153, 182, 229, 238, 310
Eam1104I CTCTTC 1 cut(s) 269
EarI CTCTTC 1 cut(s) 269
Eco31I GGTCTC 1 cut(s) 212
FaeI CATG 6 cut(s) 272, 323, 404, 535, 546, 744
FatI CATG 6 cut(s) 268, 319, 400, 531, 542, 740
FauI CCCGC 2 cut(s) 196, 324
FblI GTMKAC 2 cut(s) 213, 571
FokI GGATG 1 cut(s) 280
FspBI CTAG 4 cut(s) 375, 575, 624, 746
HapII CCGG 2 cut(s) 222, 447
Hin1II CATG 6 cut(s) 272, 323, 404, 535, 546, 744
HincII GTYRAC 4 cut(s) 77, 109, 214, 692
HindII GTYRAC 4 cut(s) 77, 109, 214, 692
HinfI GANTC 2 cut(s) 397, 601
HpaII CCGG 2 cut(s) 222, 447
HphI GGTGA 4 cut(s) 54, 239, 320, 458
Hpy166II GTNNAC 6 cut(s) 77, 109, 199, 214, 572, 692
Hpy188I TCNGA 2 cut(s) 238, 298
Hpy188III TCNNGA 2 cut(s) 39, 387
Hpy8I GTNNAC 6 cut(s) 77, 109, 199, 214, 572, 692
Hpy99I CGWCG 3 cut(s) 215, 218, 302
HpyAV CCTTC 1 cut(s) 19
HpyCH4III ACNGT 2 cut(s) 470, 496
HpyCH4IV ACGT 2 cut(s) 300, 363
HpyCH4V TGCA 4 cut(s) 199, 331, 370, 665
HpySE526I ACGT 2 cut(s) 300, 363
Hsp92II CATG 6 cut(s) 272, 323, 404, 535, 546, 744
Kzo9I GATC 5 cut(s) 153, 182, 229, 238, 310
LmnI GCTCC 2 cut(s) 30, 212
LpnPI CCDG 4 cut(s) 33, 47, 235, 460
LweI GCATC 3 cut(s) 194, 200, 492
MaeI CTAG 4 cut(s) 375, 575, 624, 746
MaeII ACGT 2 cut(s) 300, 363
MaeIII GTNAC 2 cut(s) 16, 512
MalI GATC 5 cut(s) 155, 184, 231, 240, 312
MboI GATC 5 cut(s) 153, 182, 229, 238, 310
MboII GAAGA 4 cut(s) 269, 286, 402, 402
MhlI GDGCHC 2 cut(s) 201, 645
MluCI AATT 5 cut(s) 438, 552, 581, 610, 676
MlyI GAGTC 1 cut(s) 406
MmeI TCCRAC 1 cut(s) 321
MnlI CCTC 7 cut(s) 70, 90, 139, 244, 625, 693, 766
MseI TTAA 2 cut(s) 696, 710
MspCI CTTAAG 1 cut(s) 695
MspI CCGG 2 cut(s) 222, 447
NdeII GATC 5 cut(s) 153, 182, 229, 238, 310
NlaIII CATG 6 cut(s) 272, 323, 404, 535, 546, 744
NlaIV GGNNCC 1 cut(s) 32
NmuCI GTSAC 1 cut(s) 512
PfeI GAWTC 1 cut(s) 601
PflFI GACNNNGTC 1 cut(s) 576
PflMI CCANNNNNTGG 1 cut(s) 71
PinAI ACCGGT 1 cut(s) 446
PleI GAGTC 1 cut(s) 405
PpsI GAGTC 1 cut(s) 405
PspN4I GGNNCC 1 cut(s) 32
PsyI GACNNNGTC 1 cut(s) 576
RsaI GTAC 2 cut(s) 472, 539
RsaNI GTAC 2 cut(s) 471, 538
SalI GTCGAC 1 cut(s) 212
SaqAI TTAA 2 cut(s) 696, 710
Sau3AI GATC 5 cut(s) 153, 182, 229, 238, 310
SchI GAGTC 1 cut(s) 406
SduI GDGCHC 2 cut(s) 201, 645
SetI ASST 7 cut(s) 82, 131, 255, 303, 366, 580, 725
SfaNI GCATC 3 cut(s) 194, 200, 492
SgrDI CGTCGACG 1 cut(s) 212
SmlI CTYRAG 1 cut(s) 695
SmoI CTYRAG 1 cut(s) 695
SpeI ACTAGT 1 cut(s) 374
Sse9I AATT 5 cut(s) 438, 552, 581, 610, 676
SsiI CCGC 4 cut(s) 189, 225, 317, 567
SspI AATATT 1 cut(s) 69
SspMI CTAG 4 cut(s) 375, 575, 624, 746
TaaI ACNGT 2 cut(s) 470, 496
TaiI ACGT 2 cut(s) 303, 366
TaqI TCGA 6 cut(s) 38, 213, 388, 459, 645, 685
TasI AATT 5 cut(s) 438, 552, 581, 610, 676
TfiI GAWTC 1 cut(s) 601
Tru1I TTAA 2 cut(s) 696, 710
Tru9I TTAA 2 cut(s) 696, 710
TseFI GTSAC 1 cut(s) 512
Tsp45I GTSAC 1 cut(s) 512
TspDTI ATGAA 4 cut(s) 38, 282, 325, 468
TspGWI ACGGA 2 cut(s) 164, 199
Tth111I GACNNNGTC 1 cut(s) 576
Van91I CCANNNNNTGG 1 cut(s) 71
Vha464I CTTAAG 1 cut(s) 695
VneI GTGCAC 1 cut(s) 197
XapI RAATTY 2 cut(s) 438, 552
XmiI GTMKAC 2 cut(s) 213, 571
XspI CTAG 4 cut(s) 375, 575, 624, 746
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.