Rmu_sc0000103.1_g000011

F-box FBD LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000103.1
OG0000467
Physical Location & Seq
Reverse (-)
52855 .. 54525
1671 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000103.1_g000011.1.cds

Sequence Viewer

Length: 1671 bp
atgggaaactgtttcactcataaagaaaaagcttcagatcggtggatccgggaggaggaggaagaaaacaaacaccatgagcagcgaaacagaatcagcgatccctcagatcagtgcactgatgctccggctgacagaatcagcggtgatctttcagatcggtggagtgaggaggaagaaaacaagcatgagaagagaaacagtactggttcatctgacagaatcagtgatctcccagatgatatgttgcatctcatactctcattcttgcctttcaaatacgttgggcaaactagtgtcttatctcgaagatggagtcatgtatggtcttcctatcccatctttgacttctacgagatttttactggtattgaagctgaacatcaccagacaagagcaagcatcatcaacacggtattggcacgcgatcgtcacaacgaaaactataacatgatgtacccatgccaaaaaattcccttgccaagcggcagactaggtcaatttcgtatagttggggagaatccaaacaattcttgtttggctagggttgaggaacttgtactcgatatctcgttgagtagtgcaaatacatctaatttgcctcgatgtcaacttaagtgccactcattaacgagtagtagctgtgggagttcaaaggcatggctagggttttcctctccttatgttgtctggtcttttctcctttcactccaagatttgtctctagctcatgtggatttctcggatagtgctttgggtgtggatttattttctggttcttcattcccttttctcaaaaaattgaatatagagcggtgtagaggaatgactgctctcaaaatttgctgtccgaacctaaaagttgtatatgttttcagaatggatctatatagcatggacatctctggaatgagactagagaagttgtcttgtgttgaaaattgcatcgatggttgggtcaacattttttcccctaatctacaatacttatattggggcaatgcaattactgagaagtgttccatccagagctttccaaagcccaaaagatcttccctgagttattcttttcggttaggcattacaacaacaaagatttttcataaaagtgttatcaatcttctttgccattcatcccaagcagagatacttggtatatttgatgactacctcgagattctatcagacatttatactgaatttggtggtgtacctttctcatttttcaaacttgaaaccttgagaattgggtccacaatgaagcaaagatatatcccgggaatagcatgcctgttgaagagctctcccttacttaacaccctctactttgaattttactatttcgaagaaaatggtaagtggaataacattatgttggataatggcaattgcactcaagagcaatactgggaaactcaggctcaacatttgctcccctttcttagtcacctaaaggtggtcgacattggccttggtaacatgatctctgaaagtgcaatcacttttgcaaagtttttgcttaaatatggaagaggcctgcaaaaaatgactcttagcttttggaggagcggaagttcactttctccaaattcgctaaatgataccattgatttattaaagggttttccccgggcatctgcagatgttgagttctcaagattctgctattga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBD

Protein Analysis

556

Amino Acids

63.59

Weight (kDa)

6.23

Isoelectric Point (pI)

49.19

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000467)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g02550 FvH4_6g26921 FvH4_6g45630
malus_domestica MD01G1113200.v1.1 MD09G1101600.v1.1 MD17G1084600.v1.1
prunus_persica Prupe.3G224400_v2.0.a1 Prupe.3G224500_v2.0.a1 Prupe.3G224600_v2.0.a1
pyrus_communis pycom02g19930 pycom09g00760 pycom09g00770 pycom17g08170
rosa_chinensis RchiOBHm_Chr1g0350511 RchiOBHm_Chr2g0086171 RchiOBHm_Chr2g0117831 RchiOBHm_Chr3g0450391 RchiOBHm_Chr4g0409631 RchiOBHm_Chr5g0039731
rosa_laevigata RLG00000008538 RLG00000018375 RLG00000021415 RLG00000028481 RLG00000033926 RLG00000033937 RLG00000033938 RLG00000033939 RLG00000033941
rosa_multiflora Rmu_sc0000103.1_g000011 Rmu_sc0000330.1_g000009 Rmu_sc0000652.1_g000002 Rmu_sc0001507.1_g000017 Rmu_sc0004020.1_g000010 Rmu_sc0026676.1_g000001 Rmu_ssc0000083.1_g000022 Rmu_ssc0000400.1_g000021
rosa_roxburghii Rroxscaffold_1G00040760 Rroxscaffold_1G00041490 Rroxscaffold_1G00041500 Rroxscaffold_1G00041630 Rroxscaffold_2G00087990 Rroxscaffold_2G00126200 Rroxscaffold_4G00304800 Rroxscaffold_5G00354160 Rroxscaffold_5G00354170
rosa_rugosa Rorug01G0211500 Rorug02G0214300 Rorug02G0496800 Rorug02G0627700 Rorug04G0095600 Rorug05G0181700
rosa_samantha Rh1AG226300 Rh1BG194700 Rh1CG211100 Rh1DG222900 Rh2AG270500 Rh2AG270600 Rh2AG562900 Rh2AG563000 Rh2BG281900 Rh2BG282000 Rh2BG575700 Rh2CG269300 Rh2CG269400 Rh2DG278300 Rh2DG296200 Rh2DG585900 Rh3AG028000 Rh3AG028100 Rh3BG028500 Rh3BG028600 Rh3CG027300 Rh3CG027400 Rh3DG028400 Rh3DG028500 Rh4BG156800 Rh4CG167300 Rh4CG167400 Rh4DG151100 Rh5AG268000 Rh5BG272400 Rh5BG272500 Rh5CG304000 Rh5CG305000 Rh5CG305100 Rh5DG280500
rosa_wichuraiana Rw1G019530 Rw2G021370 Rw4G012860 Rw4G012970 Rw5G025070

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 2 cut(s) 814, 1569
AccI GTMKAC 1 cut(s) 1461
AccII CGCG 1 cut(s) 426
AciI CCGC 4 cut(s) 144, 486, 814, 1569
AclWI GGATC 4 cut(s) 40, 53, 95, 891
AcsI RAATTY 5 cut(s) 471, 840, 1199, 1331, 1588
AcuI CTGAAG 1 cut(s) 18
AfaI GTAC 4 cut(s) 205, 458, 561, 1212
AfiI CCNNNNNNNGG 2 cut(s) 55, 1456
AflII CTTAAG 1 cut(s) 614
AgsI TTSAA 9 cut(s) 277, 374, 654, 805, 938, 1228, 1235, 1297, 1331
AhlI ACTAGT 1 cut(s) 293
AloI GAACNNNNNNTCC 2 cut(s) 1558, 1590
AluBI AGCT 7 cut(s) 32, 377, 642, 728, 1032, 1302, 1557
AluI AGCT 7 cut(s) 32, 377, 642, 728, 1032, 1302, 1557
Alw21I GWGCWC 2 cut(s) 119, 1304
Alw26I GTCTC 2 cut(s) 726, 907
Alw44I GTGCAC 1 cut(s) 115
AlwI GGATC 4 cut(s) 40, 53, 95, 891
Ama87I CYCGRG 3 cut(s) 1172, 1276, 1629
AoxI GGCC 2 cut(s) 1468, 1534
ApaLI GTGCAC 1 cut(s) 115
ApeKI GCWGC 1 cut(s) 82
ApoI RAATTY 5 cut(s) 471, 840, 1199, 1331, 1588
ArsI GACNNNNNNTTYG 2 cut(s) 301, 333
AspS9I GGNCC 1 cut(s) 1251
AsuC2I CCSGG 5 cut(s) 50, 1277, 1278, 1630, 1631
AsuHPI GGTGA 3 cut(s) 158, 377, 1439
AsuII TTCGAA 1 cut(s) 1344
AvaI CYCGRG 3 cut(s) 1172, 1276, 1629
AvaII GGWCC 1 cut(s) 1251
BaeGI GKGCMC 1 cut(s) 119
BamHI GGATCC 1 cut(s) 45
BanII GRGCYC 1 cut(s) 1304
BbsI GAAGAC 1 cut(s) 321
Bbv12I GWGCWC 2 cut(s) 119, 1304
BbvI GCAGC 1 cut(s) 94
BccI CCATC 4 cut(s) 306, 347, 944, 1031
BcnI CCSGG 5 cut(s) 50, 1277, 1278, 1630, 1631
BcoDI GTCTC 2 cut(s) 726, 907
BcuI ACTAGT 1 cut(s) 293
BfaI CTAG 6 cut(s) 294, 494, 543, 665, 725, 917
BfmI CTRYAG 1 cut(s) 1638
BfrI CTTAAG 1 cut(s) 614
BglII AGATCT 1 cut(s) 1049
BisI GCNGC 2 cut(s) 83, 487
BlsI GCNGC 2 cut(s) 84, 488
BmcAI AGTACT 1 cut(s) 205
Bme1390I CCNGG 5 cut(s) 50, 1277, 1278, 1630, 1631
Bme18I GGWCC 1 cut(s) 1251
BmeT110I CYCGRG 3 cut(s) 1172, 1276, 1629
BmgT120I GGNCC 1 cut(s) 1251
BmiI GGNNCC 2 cut(s) 47, 1252
BmrFI CCNGG 5 cut(s) 50, 1277, 1278, 1630, 1631
BmrI ACTGGG 1 cut(s) 1417
BmsI GCATC 5 cut(s) 112, 259, 411, 954, 1643
BmuI ACTGGG 1 cut(s) 1417
BpiI GAAGAC 1 cut(s) 321
Bpu14I TTCGAA 1 cut(s) 1344
BpuEI CTTGAG 3 cut(s) 1261, 1380, 1639
BpuMI CCSGG 5 cut(s) 50, 1277, 1278, 1630, 1631
Bsa29I ATCGAT 1 cut(s) 948
BsaJI CCNNGG 4 cut(s) 1276, 1471, 1628, 1629
BsaXI ACNNNNNCTCC 6 cut(s) 109, 139, 1416, 1446, 1558, 1588
Bsc4I CCNNNNNNNGG 2 cut(s) 55, 1456
Bse1I ACTGG 3 cut(s) 211, 370, 1412
Bse3DI GCAATG 1 cut(s) 1006
BseCI ATCGAT 1 cut(s) 948
BseDI CCNNGG 4 cut(s) 1276, 1471, 1628, 1629
BseGI GGATG 2 cut(s) 1023, 1133
BseLI CCNNNNNNNGG 2 cut(s) 55, 1456
BseMI GCAATG 1 cut(s) 1006
BseMII CTCAG 4 cut(s) 120, 1002, 1049, 1430
BseNI ACTGG 3 cut(s) 211, 370, 1412
BseRI GAGGAG 4 cut(s) 68, 71, 185, 1579
BseSI GKGCMC 1 cut(s) 119
BseXI GCAGC 1 cut(s) 94
Bsh1236I CGCG 1 cut(s) 426
Bsh1285I CGRYCG 1 cut(s) 430
BshFI GGCC 2 cut(s) 1470, 1536
BshVI ATCGAT 1 cut(s) 948
BsiEI CGRYCG 1 cut(s) 430
BsiHKAI GWGCWC 2 cut(s) 119, 1304
BsiHKCI CYCGRG 3 cut(s) 1172, 1276, 1629
BsiSI CCGG 4 cut(s) 49, 128, 1277, 1630
BslI CCNNNNNNNGG 2 cut(s) 55, 1456
BsmAI GTCTC 2 cut(s) 726, 907
BsnI GGCC 2 cut(s) 1470, 1536
BsoBI CYCGRG 3 cut(s) 1172, 1276, 1629
Bsp119I TTCGAA 1 cut(s) 1344
Bsp1286I GDGCHC 2 cut(s) 119, 1304
BspACI CCGC 4 cut(s) 144, 486, 814, 1569
BspANI GGCC 2 cut(s) 1470, 1536
BspCNI CTCAG 4 cut(s) 119, 1003, 1050, 1429
BspDI ATCGAT 1 cut(s) 948
BspFNI CGCG 1 cut(s) 426
BspLI GGNNCC 2 cut(s) 47, 1252
BspMAI CTGCAG 1 cut(s) 1642
BspPI GGATC 4 cut(s) 40, 53, 95, 891
BspQI GCTCTTC 1 cut(s) 1292
BspT104I TTCGAA 1 cut(s) 1344
BspTI CTTAAG 1 cut(s) 614
BsrBI CCGCTC 2 cut(s) 814, 1569
BsrDI GCAATG 1 cut(s) 1006
BsrI ACTGG 3 cut(s) 211, 370, 1412
BssECI CCNNGG 4 cut(s) 1276, 1471, 1628, 1629
BssT1I CCWWGG 1 cut(s) 1471
Bst4CI ACNGT 3 cut(s) 11, 203, 415
Bst6I CTCTTC 3 cut(s) 188, 1292, 1525
BstAFI CTTAAG 1 cut(s) 614
BstBI TTCGAA 1 cut(s) 1344
BstC8I GCNNGC 4 cut(s) 400, 424, 1288, 1538
BstDEI CTNAG 6 cut(s) 106, 1011, 1058, 1416, 1442, 1553
BstF5I GGATG 2 cut(s) 1023, 1133
BstFNI CGCG 1 cut(s) 426
BstMAI GTCTC 2 cut(s) 726, 907
BstMCI CGRYCG 1 cut(s) 430
BstNSI RCATGY 1 cut(s) 1290
BstSCI CCNGG 5 cut(s) 48, 1275, 1276, 1628, 1629
BstSFI CTRYAG 1 cut(s) 1638
BstSLI GKGCMC 1 cut(s) 119
BstUI CGCG 1 cut(s) 426
BstV1I GCAGC 1 cut(s) 94
BstV2I GAAGAC 1 cut(s) 321
BstX2I RGATCY 3 cut(s) 45, 883, 1049
BstYI RGATCY 3 cut(s) 45, 883, 1049
Bsu15I ATCGAT 1 cut(s) 948
BsuRI GGCC 2 cut(s) 1470, 1536
BsuTUI ATCGAT 1 cut(s) 948
BtsCI GGATG 2 cut(s) 1023, 1133
BtsIMutI CAGTG 3 cut(s) 117, 119, 232
Cac8I GCNNGC 4 cut(s) 400, 424, 1288, 1538
Cfr13I GGNCC 1 cut(s) 1251
Cfr9I CCCGGG 2 cut(s) 1276, 1629
ClaI ATCGAT 1 cut(s) 948
Csp6I GTAC 4 cut(s) 204, 457, 560, 1211
CviQI GTAC 4 cut(s) 204, 457, 560, 1211
DdeI CTNAG 6 cut(s) 106, 1011, 1058, 1416, 1442, 1553
Eam1104I CTCTTC 3 cut(s) 188, 1292, 1525
EarI CTCTTC 3 cut(s) 188, 1292, 1525
Ecl136II GAGCTC 1 cut(s) 1302
Eco130I CCWWGG 1 cut(s) 1471
Eco147I AGGCCT 1 cut(s) 1536
Eco24I GRGCYC 1 cut(s) 1304
Eco32I GATATC 1 cut(s) 568
Eco47I GGWCC 1 cut(s) 1251
Eco53kI GAGCTC 1 cut(s) 1302
Eco57I CTGAAG 1 cut(s) 18
Eco88I CYCGRG 3 cut(s) 1172, 1276, 1629
EcoICRI GAGCTC 1 cut(s) 1302
EcoRV GATATC 1 cut(s) 568
EcoT14I CCWWGG 1 cut(s) 1471
EcoT38I GRGCYC 1 cut(s) 1304
ErhI CCWWGG 1 cut(s) 1471
FblI GTMKAC 1 cut(s) 1461
Fnu4HI GCNGC 2 cut(s) 83, 487
FokI GGATG 2 cut(s) 1010, 1120
FriOI GRGCYC 1 cut(s) 1304
Fsp4HI GCNGC 2 cut(s) 83, 487
FspBI CTAG 6 cut(s) 294, 494, 543, 665, 725, 917
GluI GCNGC 2 cut(s) 83, 487
HaeIII GGCC 2 cut(s) 1470, 1536
HapII CCGG 4 cut(s) 49, 128, 1277, 1630
HincII GTYRAC 3 cut(s) 611, 961, 1462
HindII GTYRAC 3 cut(s) 611, 961, 1462
HindIII AAGCTT 1 cut(s) 30
HinfI GANTC 8 cut(s) 93, 138, 222, 316, 520, 1177, 1549, 1659
HpaII CCGG 4 cut(s) 49, 128, 1277, 1630
HphI GGTGA 3 cut(s) 158, 377, 1439
Hpy166II GTNNAC 7 cut(s) 117, 611, 961, 1211, 1254, 1462, 1577
Hpy188I TCNGA 9 cut(s) 37, 109, 157, 217, 745, 852, 878, 1186, 1489
Hpy188III TCNNGA 6 cut(s) 306, 906, 1027, 1174, 1397, 1656
Hpy8I GTNNAC 7 cut(s) 117, 611, 961, 1211, 1254, 1462, 1577
HpyCH4III ACNGT 3 cut(s) 11, 203, 415
HpyCH4IV ACGT 1 cut(s) 282
HpyF3I CTNAG 6 cut(s) 106, 1011, 1058, 1416, 1442, 1553
HpySE526I ACGT 1 cut(s) 282
LguI GCTCTTC 1 cut(s) 1292
LmnI GCTCC 3 cut(s) 130, 1437, 1566
Lsp1109I GCAGC 1 cut(s) 94
LweI GCATC 5 cut(s) 112, 259, 411, 954, 1643
MaeI CTAG 6 cut(s) 294, 494, 543, 665, 725, 917
MaeII ACGT 1 cut(s) 282
MaeIII GTNAC 3 cut(s) 431, 1445, 1475
MbiI CCGCTC 2 cut(s) 814, 1569
MfeI CAATTG 1 cut(s) 1387
MflI RGATCY 3 cut(s) 45, 883, 1049
MhlI GDGCHC 2 cut(s) 119, 1304
MlyI GAGTC 2 cut(s) 325, 1543
MmeI TCCRAC 1 cut(s) 1356
MseI TTAA 5 cut(s) 615, 629, 1314, 1521, 1616
MslI CAYNNNNRTG 1 cut(s) 1107
MspA1I CMGCKG 1 cut(s) 144
MspCI CTTAAG 1 cut(s) 614
MspI CCGG 4 cut(s) 49, 128, 1277, 1630
MspR9I CCNGG 5 cut(s) 50, 1277, 1278, 1630, 1631
MunI CAATTG 1 cut(s) 1387
MvnI CGCG 1 cut(s) 426
NciI CCSGG 5 cut(s) 50, 1277, 1278, 1630, 1631
NlaIV GGNNCC 2 cut(s) 47, 1252
NmuCI GTSAC 2 cut(s) 431, 1445
NspI RCATGY 1 cut(s) 1290
NspV TTCGAA 1 cut(s) 1344
PaeI GCATGC 1 cut(s) 1290
PaeR7I CTCGAG 1 cut(s) 1172
PceI AGGCCT 1 cut(s) 1536
PciSI GCTCTTC 1 cut(s) 1292
PfeI GAWTC 6 cut(s) 93, 138, 222, 520, 1177, 1659
PflFI GACNNNGTC 1 cut(s) 495
PfoI TCCNGGA 1 cut(s) 48
PkrI GCNGC 2 cut(s) 84, 488
Ple19I CGATCG 1 cut(s) 430
PleI GAGTC 2 cut(s) 324, 1543
PpsI GAGTC 2 cut(s) 324, 1543
Psp124BI GAGCTC 1 cut(s) 1304
PspN4I GGNNCC 2 cut(s) 47, 1252
PspPI GGNCC 1 cut(s) 1251
PstI CTGCAG 1 cut(s) 1642
PsuI RGATCY 3 cut(s) 45, 883, 1049
PsyI GACNNNGTC 1 cut(s) 495
PvuI CGATCG 1 cut(s) 430
RsaI GTAC 4 cut(s) 205, 458, 561, 1212
RsaNI GTAC 4 cut(s) 204, 457, 560, 1211
RseI CAYNNNNRTG 1 cut(s) 1107
SacI GAGCTC 1 cut(s) 1304
SalI GTCGAC 1 cut(s) 1460
SapI GCTCTTC 1 cut(s) 1292
SaqAI TTAA 5 cut(s) 615, 629, 1314, 1521, 1616
SatI GCNGC 2 cut(s) 83, 487
Sau96I GGNCC 1 cut(s) 1251
ScaI AGTACT 1 cut(s) 205
SchI GAGTC 2 cut(s) 325, 1543
ScrFI CCNGG 5 cut(s) 50, 1277, 1278, 1630, 1631
SduI GDGCHC 2 cut(s) 119, 1304
SfaNI GCATC 5 cut(s) 112, 259, 411, 954, 1643
SfcI CTRYAG 1 cut(s) 1638
Sfr274I CTCGAG 1 cut(s) 1172
SfuI TTCGAA 1 cut(s) 1344
SinI GGWCC 1 cut(s) 1251
SlaI CTCGAG 1 cut(s) 1172
SmaI CCCGGG 2 cut(s) 1278, 1631
SmiMI CAYNNNNRTG 1 cut(s) 1107
SmlI CTYRAG 5 cut(s) 614, 1172, 1240, 1395, 1654
SmoI CTYRAG 5 cut(s) 614, 1172, 1240, 1395, 1654
SpeI ACTAGT 1 cut(s) 293
SphI GCATGC 1 cut(s) 1290
SseBI AGGCCT 1 cut(s) 1536
SsiI CCGC 4 cut(s) 144, 486, 814, 1569
SspMI CTAG 6 cut(s) 294, 494, 543, 665, 725, 917
SstI GAGCTC 1 cut(s) 1304
StuI AGGCCT 1 cut(s) 1536
StyD4I CCNGG 5 cut(s) 48, 1275, 1276, 1628, 1629
StyI CCWWGG 1 cut(s) 1471
TaaI ACNGT 3 cut(s) 11, 203, 415
TaiI ACGT 1 cut(s) 285
TaqI TCGA 7 cut(s) 307, 564, 604, 948, 1173, 1344, 1461
TatI WGTACW 2 cut(s) 203, 559
TauI GCSGC 1 cut(s) 489
TfiI GAWTC 6 cut(s) 93, 138, 222, 520, 1177, 1659
Tru1I TTAA 5 cut(s) 615, 629, 1314, 1521, 1616
Tru9I TTAA 5 cut(s) 615, 629, 1314, 1521, 1616
TscAI CASTG 3 cut(s) 119, 124, 232
TseFI GTSAC 2 cut(s) 431, 1445
TseI GCWGC 1 cut(s) 82
Tsp45I GTSAC 2 cut(s) 431, 1445
TspDTI ATGAA 5 cut(s) 201, 771, 1091, 1122, 1274
TspMI CCCGGG 2 cut(s) 1276, 1629
TspRI CASTG 3 cut(s) 119, 124, 232
Tth111I GACNNNGTC 1 cut(s) 495
Vha464I CTTAAG 1 cut(s) 614
VneI GTGCAC 1 cut(s) 115
VpaK11BI GGWCC 1 cut(s) 1251
XapI RAATTY 5 cut(s) 471, 840, 1199, 1331, 1588
XceI RCATGY 1 cut(s) 1290
XhoI CTCGAG 1 cut(s) 1172
XmaI CCCGGG 2 cut(s) 1276, 1629
XmiI GTMKAC 1 cut(s) 1461
XspI CTAG 6 cut(s) 294, 494, 543, 665, 725, 917
ZrmI AGTACT 1 cut(s) 205
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.