RLG00000018375

F-box FBD LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0000467
Physical Location & Seq
Forward (+)
28932927 .. 28933595
669 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000018375

Sequence Viewer

Length: 669 bp
ATGCCGCAAAATTTCCTTGCCAAGAGTGGGAGGGATCCGAACAAATCTTGTTTGTCAAGGGTTGAGGAACTTGTACTCGACATCAGGTTGAGTTCTGGAAACACATCTGATTTGCATCAATGTCAACTCATGTGCCACTCATTAAGGAGTAGTAGCTGTGGGAATTCAAAGGCATGGCTAGGGTTTCCCTCGTCTTATGTTGTCGGGTCTTATCTCCGTTCACTTCATACTTTGTCTCTAACTTGTGTGGATTTCTTGGATAGTAGTGCTTTGGGTGTGGATTTATTTTCTGGTTCTTCATTCCCTTATCTCGAAAAGTTGAACTTGGAGCGCTGTAGAGGAAGGAGTGATCTCAAAATTTTCTGTCCAAACCTAAAACGTATAAAGGTATTTGATATGGAATTAAATAGTCTGGACATCTCCGGAATGAGACTGGAGGAGTTGCGAGTCTCGTTTTGTTTTCAAGAGTATATCAATGGAGGTTGGGTCAACATTTTTGCACCGAATCTACAATCACTTCCTTGGGTTCATTCAGGCATTACTGAGAGGTGTTCGATCCAGAGCTTTCCTATGCTCAAAAGATCTTTCATAAGTTCCCCCCTTACAACGAAGAAGATAAATAATAACAGTGTTGTCGATCGATCTTCTTTCCGCTTCATCCCAAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBD

Protein Analysis

223

Amino Acids

25.01

Weight (kDa)

8.9

Isoelectric Point (pI)

53.99

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000467)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g02550 FvH4_6g26921 FvH4_6g45630
malus_domestica MD01G1113200.v1.1 MD09G1101600.v1.1 MD17G1084600.v1.1
prunus_persica Prupe.3G224400_v2.0.a1 Prupe.3G224500_v2.0.a1 Prupe.3G224600_v2.0.a1
pyrus_communis pycom02g19930 pycom09g00760 pycom09g00770 pycom17g08170
rosa_chinensis RchiOBHm_Chr1g0350511 RchiOBHm_Chr2g0086171 RchiOBHm_Chr2g0117831 RchiOBHm_Chr3g0450391 RchiOBHm_Chr4g0409631 RchiOBHm_Chr5g0039731
rosa_laevigata RLG00000008538 RLG00000018375 RLG00000021415 RLG00000028481 RLG00000033926 RLG00000033937 RLG00000033938 RLG00000033939 RLG00000033941
rosa_multiflora Rmu_sc0000103.1_g000011 Rmu_sc0000330.1_g000009 Rmu_sc0000652.1_g000002 Rmu_sc0001507.1_g000017 Rmu_sc0004020.1_g000010 Rmu_sc0026676.1_g000001 Rmu_ssc0000083.1_g000022 Rmu_ssc0000400.1_g000021
rosa_roxburghii Rroxscaffold_1G00040760 Rroxscaffold_1G00041490 Rroxscaffold_1G00041500 Rroxscaffold_1G00041630 Rroxscaffold_2G00087990 Rroxscaffold_2G00126200 Rroxscaffold_4G00304800 Rroxscaffold_5G00354160 Rroxscaffold_5G00354170
rosa_rugosa Rorug01G0211500 Rorug02G0214300 Rorug02G0496800 Rorug02G0627700 Rorug04G0095600 Rorug05G0181700
rosa_samantha Rh1AG226300 Rh1BG194700 Rh1CG211100 Rh1DG222900 Rh2AG270500 Rh2AG270600 Rh2AG562900 Rh2AG563000 Rh2BG281900 Rh2BG282000 Rh2BG575700 Rh2CG269300 Rh2CG269400 Rh2DG278300 Rh2DG296200 Rh2DG585900 Rh3AG028000 Rh3AG028100 Rh3BG028500 Rh3BG028600 Rh3CG027300 Rh3CG027400 Rh3DG028400 Rh3DG028500 Rh4BG156800 Rh4CG167300 Rh4CG167400 Rh4DG151100 Rh5AG268000 Rh5BG272400 Rh5BG272500 Rh5CG304000 Rh5CG305000 Rh5CG305100 Rh5DG280500
rosa_wichuraiana Rw1G019530 Rw2G021370 Rw4G012860 Rw4G012970 Rw5G025070

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 422
AciI CCGC 2 cut(s) 5, 652
AclWI GGATC 3 cut(s) 29, 42, 550
AcsI RAATTY 3 cut(s) 10, 163, 357
AfaI GTAC 1 cut(s) 75
AfeI AGCGCT 1 cut(s) 332
AfiI CCNNNNNNNGG 1 cut(s) 27
AgsI TTSAA 3 cut(s) 168, 322, 464
AluBI AGCT 2 cut(s) 156, 564
AluI AGCT 2 cut(s) 156, 564
Alw26I GTCTC 3 cut(s) 240, 424, 454
AlwI GGATC 3 cut(s) 29, 42, 550
Aor13HI TCCGGA 1 cut(s) 422
Aor51HI AGCGCT 1 cut(s) 332
ApoI RAATTY 3 cut(s) 10, 163, 357
AspLEI GCGC 1 cut(s) 333
BamHI GGATCC 1 cut(s) 34
BcoDI GTCTC 3 cut(s) 240, 424, 454
BfaI CTAG 1 cut(s) 179
BfmI CTRYAG 1 cut(s) 334
BfoI RGCGCY 1 cut(s) 334
BglII AGATCT 1 cut(s) 581
BisI GCNGC 1 cut(s) 5
BlsI GCNGC 1 cut(s) 6
BmiI GGNNCC 1 cut(s) 36
BmsI GCATC 1 cut(s) 124
BpmI CTGGAG 1 cut(s) 455
Bsa29I ATCGAT 1 cut(s) 640
BsaBI GATNNNNATC 1 cut(s) 114
BsaJI CCNNGG 1 cut(s) 521
BsaWI WCCGGW 1 cut(s) 422
BsaXI ACNNNNNCTCC 2 cut(s) 471, 501
Bsc4I CCNNNNNNNGG 1 cut(s) 27
Bse1I ACTGG 1 cut(s) 438
Bse8I GATNNNNATC 1 cut(s) 114
BseAI TCCGGA 1 cut(s) 422
BseCI ATCGAT 1 cut(s) 640
BseDI CCNNGG 1 cut(s) 521
BseGI GGATG 1 cut(s) 657
BseJI GATNNNNATC 1 cut(s) 114
BseLI CCNNNNNNNGG 1 cut(s) 27
BseMII CTCAG 1 cut(s) 534
BseNI ACTGG 1 cut(s) 438
BseRI GAGGAG 1 cut(s) 452
Bsh1285I CGRYCG 1 cut(s) 640
BshVI ATCGAT 1 cut(s) 640
BsiEI CGRYCG 1 cut(s) 640
BsiSI CCGG 1 cut(s) 423
BslI CCNNNNNNNGG 1 cut(s) 27
BsmAI GTCTC 3 cut(s) 240, 424, 454
Bsp13I TCCGGA 1 cut(s) 422
Bsp143I GATC 6 cut(s) 34, 349, 555, 581, 637, 641
BspACI CCGC 2 cut(s) 5, 652
BspCNI CTCAG 1 cut(s) 535
BspDI ATCGAT 1 cut(s) 640
BspEI TCCGGA 1 cut(s) 422
BspLI GGNNCC 1 cut(s) 36
BspPI GGATC 3 cut(s) 29, 42, 550
BsrI ACTGG 1 cut(s) 438
BssECI CCNNGG 1 cut(s) 521
BssMI GATC 6 cut(s) 34, 349, 555, 581, 637, 641
BssT1I CCWWGG 1 cut(s) 521
Bst4CI ACNGT 1 cut(s) 629
BstDEI CTNAG 1 cut(s) 543
BstF5I GGATG 1 cut(s) 657
BstH2I RGCGCY 1 cut(s) 334
BstHHI GCGC 1 cut(s) 333
BstKTI GATC 6 cut(s) 37, 352, 558, 584, 640, 644
BstMAI GTCTC 3 cut(s) 240, 424, 454
BstMBI GATC 6 cut(s) 34, 349, 555, 581, 637, 641
BstMCI CGRYCG 1 cut(s) 640
BstSFI CTRYAG 1 cut(s) 334
BstX2I RGATCY 2 cut(s) 34, 581
BstYI RGATCY 2 cut(s) 34, 581
Bsu15I ATCGAT 1 cut(s) 640
BsuTUI ATCGAT 1 cut(s) 640
BtsCI GGATG 1 cut(s) 657
BtsIMutI CAGTG 1 cut(s) 634
CfoI GCGC 1 cut(s) 333
ClaI ATCGAT 1 cut(s) 640
Csp6I GTAC 1 cut(s) 74
CviAII CATG 2 cut(s) 130, 174
CviJI RGCY 3 cut(s) 156, 178, 564
CviKI_1 RGCY 3 cut(s) 156, 178, 564
CviQI GTAC 1 cut(s) 74
DdeI CTNAG 1 cut(s) 543
DpnI GATC 6 cut(s) 36, 351, 557, 583, 639, 643
DpnII GATC 6 cut(s) 34, 349, 555, 581, 637, 641
Eco130I CCWWGG 1 cut(s) 521
Eco47III AGCGCT 1 cut(s) 332
EcoRI GAATTC 1 cut(s) 163
EcoT14I CCWWGG 1 cut(s) 521
ErhI CCWWGG 1 cut(s) 521
FaeI CATG 2 cut(s) 133, 177
FaiI YATR 9 cut(s) 131, 175, 198, 228, 383, 398, 471, 572, 590
FalI AAGNNNNNCTT 2 cut(s) 308, 340
FatI CATG 2 cut(s) 129, 173
Fnu4HI GCNGC 1 cut(s) 5
FokI GGATG 1 cut(s) 644
Fsp4HI GCNGC 1 cut(s) 5
FspBI CTAG 1 cut(s) 179
GlaI GCGC 1 cut(s) 332
GluI GCNGC 1 cut(s) 5
GsuI CTGGAG 1 cut(s) 455
HaeII RGCGCY 1 cut(s) 334
HapII CCGG 1 cut(s) 423
HhaI GCGC 1 cut(s) 333
Hin1II CATG 2 cut(s) 133, 177
Hin6I GCGC 1 cut(s) 331
HinP1I GCGC 1 cut(s) 331
HincII GTYRAC 2 cut(s) 125, 490
HindII GTYRAC 2 cut(s) 125, 490
HinfI GANTC 2 cut(s) 447, 505
HpaII CCGG 1 cut(s) 423
Hpy166II GTNNAC 3 cut(s) 125, 221, 490
Hpy188I TCNGA 2 cut(s) 39, 109
Hpy188III TCNNGA 6 cut(s) 96, 311, 413, 423, 464, 559
Hpy8I GTNNAC 3 cut(s) 125, 221, 490
HpyAV CCTTC 1 cut(s) 336
HpyCH4III ACNGT 1 cut(s) 629
HpyCH4IV ACGT 1 cut(s) 379
HpyCH4V TGCA 2 cut(s) 115, 500
HpyF3I CTNAG 1 cut(s) 543
HpySE526I ACGT 1 cut(s) 379
Hsp92II CATG 2 cut(s) 133, 177
HspAI GCGC 1 cut(s) 331
Kpn2I TCCGGA 1 cut(s) 422
Kzo9I GATC 6 cut(s) 34, 349, 555, 581, 637, 641
LmnI GCTCC 1 cut(s) 328
LpnPI CCDG 8 cut(s) 70, 81, 276, 398, 419, 436, 519, 572
LweI GCATC 1 cut(s) 124
MaeI CTAG 1 cut(s) 179
MaeII ACGT 1 cut(s) 379
MalI GATC 6 cut(s) 36, 351, 557, 583, 639, 643
MboI GATC 6 cut(s) 34, 349, 555, 581, 637, 641
MboII GAAGA 4 cut(s) 288, 622, 625, 636
MflI RGATCY 2 cut(s) 34, 581
MluCI AATT 4 cut(s) 10, 163, 357, 401
MlyI GAGTC 1 cut(s) 456
MnlI CCTC 7 cut(s) 24, 58, 199, 332, 430, 473, 540
MroI TCCGGA 1 cut(s) 422
MseI TTAA 2 cut(s) 143, 404
MspI CCGG 1 cut(s) 423
NdeII GATC 6 cut(s) 34, 349, 555, 581, 637, 641
NlaIII CATG 2 cut(s) 133, 177
NlaIV GGNNCC 1 cut(s) 36
PfeI GAWTC 1 cut(s) 505
PkrI GCNGC 1 cut(s) 6
Ple19I CGATCG 1 cut(s) 640
PleI GAGTC 1 cut(s) 455
PpsI GAGTC 1 cut(s) 455
PspN4I GGNNCC 1 cut(s) 36
PsuI RGATCY 2 cut(s) 34, 581
PvuI CGATCG 1 cut(s) 640
RsaI GTAC 1 cut(s) 75
RsaNI GTAC 1 cut(s) 74
SaqAI TTAA 2 cut(s) 143, 404
SatI GCNGC 1 cut(s) 5
Sau3AI GATC 6 cut(s) 34, 349, 555, 581, 637, 641
SchI GAGTC 1 cut(s) 456
SetI ASST 8 cut(s) 89, 158, 375, 382, 390, 484, 551, 566
SfaNI GCATC 1 cut(s) 124
SfcI CTRYAG 1 cut(s) 334
Sse9I AATT 4 cut(s) 10, 163, 357, 401
SsiI CCGC 2 cut(s) 5, 652
SspMI CTAG 1 cut(s) 179
StyI CCWWGG 1 cut(s) 521
TaaI ACNGT 1 cut(s) 629
TaiI ACGT 1 cut(s) 382
TaqI TCGA 5 cut(s) 78, 312, 554, 636, 640
TasI AATT 4 cut(s) 10, 163, 357, 401
TatI WGTACW 1 cut(s) 73
TauI GCSGC 1 cut(s) 7
TfiI GAWTC 1 cut(s) 505
Tru1I TTAA 2 cut(s) 143, 404
Tru9I TTAA 2 cut(s) 143, 404
TscAI CASTG 1 cut(s) 634
TspDTI ATGAA 5 cut(s) 215, 288, 518, 577, 646
TspGWI ACGGA 1 cut(s) 206
TspRI CASTG 1 cut(s) 634
XapI RAATTY 3 cut(s) 10, 163, 357
XspI CTAG 1 cut(s) 179
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.