RchiOBHm_Chr3g0450391

F-box FBD LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0000467
Physical Location & Seq
Forward (+)
1942580 .. 1943005
426 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ41773

Sequence Viewer

Length: 426 bp
ATGTCGTTTGGTCTTTATCTCCTTTCACTTCAATCCTTGTCTCTAACTCGTATGGATTTCTTGGATAGTAGTCATAGTACTGGTGCTTTGGGGGTGGATTTATTTTCTGGTTATTCATTCCCTTGTCTCAAAAAATTGAATATAAAGAGGTGCAGAGGAATGAGTGATCTCAAAATTTCTTGTCGAAACCTAAAAGATATACGTGTTTTTGATATGGGTTTAAAGAGTATGGACATCTCCGGAATGAGATTAGAGGGTATAGACATCTCGTTTTGTTTTGCAAATTGCATCAATGGAAGTTGGGTCAACATTTTCGGCCCGAATCTAAAATCCTTTGCTTGGATGGGTAATGGCATTACTGACAAGTTTTCGATCCGGAGCTTTCCTGCGCTCAAAAGGTCTAATTTTTTTTTTGCCCCACATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBD

Protein Analysis

141

Amino Acids

15.83

Weight (kDa)

9.43

Isoelectric Point (pI)

37.07

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000467)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g02550 FvH4_6g26921 FvH4_6g45630
malus_domestica MD01G1113200.v1.1 MD09G1101600.v1.1 MD17G1084600.v1.1
prunus_persica Prupe.3G224400_v2.0.a1 Prupe.3G224500_v2.0.a1 Prupe.3G224600_v2.0.a1
pyrus_communis pycom02g19930 pycom09g00760 pycom09g00770 pycom17g08170
rosa_chinensis RchiOBHm_Chr1g0350511 RchiOBHm_Chr2g0086171 RchiOBHm_Chr2g0117831 RchiOBHm_Chr3g0450391 RchiOBHm_Chr4g0409631 RchiOBHm_Chr5g0039731
rosa_laevigata RLG00000008538 RLG00000018375 RLG00000021415 RLG00000028481 RLG00000033926 RLG00000033937 RLG00000033938 RLG00000033939 RLG00000033941
rosa_multiflora Rmu_sc0000103.1_g000011 Rmu_sc0000330.1_g000009 Rmu_sc0000652.1_g000002 Rmu_sc0001507.1_g000017 Rmu_sc0004020.1_g000010 Rmu_sc0026676.1_g000001 Rmu_ssc0000083.1_g000022 Rmu_ssc0000400.1_g000021
rosa_roxburghii Rroxscaffold_1G00040760 Rroxscaffold_1G00041490 Rroxscaffold_1G00041500 Rroxscaffold_1G00041630 Rroxscaffold_2G00087990 Rroxscaffold_2G00126200 Rroxscaffold_4G00304800 Rroxscaffold_5G00354160 Rroxscaffold_5G00354170
rosa_rugosa Rorug01G0211500 Rorug02G0214300 Rorug02G0496800 Rorug02G0627700 Rorug04G0095600 Rorug05G0181700
rosa_samantha Rh1AG226300 Rh1BG194700 Rh1CG211100 Rh1DG222900 Rh2AG270500 Rh2AG270600 Rh2AG562900 Rh2AG563000 Rh2BG281900 Rh2BG282000 Rh2BG575700 Rh2CG269300 Rh2CG269400 Rh2DG278300 Rh2DG296200 Rh2DG585900 Rh3AG028000 Rh3AG028100 Rh3BG028500 Rh3BG028600 Rh3CG027300 Rh3CG027400 Rh3DG028400 Rh3DG028500 Rh4BG156800 Rh4CG167300 Rh4CG167400 Rh4DG151100 Rh5AG268000 Rh5BG272400 Rh5BG272500 Rh5CG304000 Rh5CG305000 Rh5CG305100 Rh5DG280500
rosa_wichuraiana Rw1G019530 Rw2G021370 Rw4G012860 Rw4G012970 Rw5G025070

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 2 cut(s) 239, 375
AclWI GGATC 1 cut(s) 367
AcsI RAATTY 1 cut(s) 174
AfaI GTAC 1 cut(s) 79
AfiI CCNNNNNNNGG 1 cut(s) 339
AflIII ACRYGT 1 cut(s) 202
AgsI TTSAA 2 cut(s) 32, 139
AluBI AGCT 1 cut(s) 381
AluI AGCT 1 cut(s) 381
Alw26I GTCTC 2 cut(s) 45, 131
AlwI GGATC 1 cut(s) 367
Aor13HI TCCGGA 2 cut(s) 239, 375
AoxI GGCC 1 cut(s) 316
ApoI RAATTY 1 cut(s) 174
AspLEI GCGC 1 cut(s) 391
AspS9I GGNCC 1 cut(s) 317
BccI CCATC 1 cut(s) 337
BcoDI GTCTC 2 cut(s) 45, 131
BmcAI AGTACT 1 cut(s) 79
BmgT120I GGNCC 1 cut(s) 317
BmsI GCATC 1 cut(s) 297
BsaAI YACGTR 1 cut(s) 203
BsaWI WCCGGW 2 cut(s) 239, 375
Bsc4I CCNNNNNNNGG 1 cut(s) 339
Bse1I ACTGG 1 cut(s) 85
BseAI TCCGGA 2 cut(s) 239, 375
BseGI GGATG 1 cut(s) 348
BseLI CCNNNNNNNGG 1 cut(s) 339
BseNI ACTGG 1 cut(s) 85
BsgI GTGCAG 1 cut(s) 172
BshFI GGCC 1 cut(s) 318
BsiSI CCGG 2 cut(s) 240, 376
BslI CCNNNNNNNGG 1 cut(s) 339
BsmAI GTCTC 2 cut(s) 45, 131
BsnI GGCC 1 cut(s) 318
Bsp13I TCCGGA 2 cut(s) 239, 375
Bsp143I GATC 2 cut(s) 166, 372
BspANI GGCC 1 cut(s) 318
BspEI TCCGGA 2 cut(s) 239, 375
BspPI GGATC 1 cut(s) 367
BsrI ACTGG 1 cut(s) 85
BssMI GATC 2 cut(s) 166, 372
BstBAI YACGTR 1 cut(s) 203
BstF5I GGATG 1 cut(s) 348
BstHHI GCGC 1 cut(s) 391
BstKTI GATC 2 cut(s) 169, 375
BstMAI GTCTC 2 cut(s) 45, 131
BstMBI GATC 2 cut(s) 166, 372
BsuRI GGCC 1 cut(s) 318
BtsCI GGATG 1 cut(s) 348
CfoI GCGC 1 cut(s) 391
Cfr13I GGNCC 1 cut(s) 317
Csp6I GTAC 1 cut(s) 78
CviJI RGCY 2 cut(s) 318, 381
CviKI_1 RGCY 2 cut(s) 318, 381
CviQI GTAC 1 cut(s) 78
DpnI GATC 2 cut(s) 168, 374
DpnII GATC 2 cut(s) 166, 372
DraI TTTAAA 1 cut(s) 222
FaiI YATR 7 cut(s) 53, 75, 143, 200, 215, 230, 260
FokI GGATG 1 cut(s) 355
GlaI GCGC 1 cut(s) 390
HaeIII GGCC 1 cut(s) 318
HapII CCGG 2 cut(s) 240, 376
HhaI GCGC 1 cut(s) 391
Hin6I GCGC 1 cut(s) 389
HinP1I GCGC 1 cut(s) 389
HincII GTYRAC 1 cut(s) 307
HindII GTYRAC 1 cut(s) 307
HinfI GANTC 1 cut(s) 322
HpaII CCGG 2 cut(s) 240, 376
Hpy166II GTNNAC 1 cut(s) 307
Hpy188III TCNNGA 2 cut(s) 240, 376
Hpy8I GTNNAC 1 cut(s) 307
HpyCH4IV ACGT 1 cut(s) 202
HpyCH4V TGCA 3 cut(s) 153, 281, 288
HpySE526I ACGT 1 cut(s) 202
HspAI GCGC 1 cut(s) 389
Kpn2I TCCGGA 2 cut(s) 239, 375
Kzo9I GATC 2 cut(s) 166, 372
LmnI GCTCC 1 cut(s) 378
LpnPI CCDG 5 cut(s) 66, 93, 253, 389, 399
LweI GCATC 1 cut(s) 297
MaeII ACGT 1 cut(s) 202
MalI GATC 2 cut(s) 168, 374
MboI GATC 2 cut(s) 166, 372
MluCI AATT 4 cut(s) 134, 174, 283, 403
MnlI CCTC 3 cut(s) 141, 149, 247
MroI TCCGGA 2 cut(s) 239, 375
MseI TTAA 1 cut(s) 221
MspI CCGG 2 cut(s) 240, 376
NdeII GATC 2 cut(s) 166, 372
PfeI GAWTC 1 cut(s) 322
Ppu21I YACGTR 1 cut(s) 203
PspPI GGNCC 1 cut(s) 317
RsaI GTAC 1 cut(s) 79
RsaNI GTAC 1 cut(s) 78
SaqAI TTAA 1 cut(s) 221
Sau3AI GATC 2 cut(s) 166, 372
Sau96I GGNCC 1 cut(s) 317
ScaI AGTACT 1 cut(s) 79
SetI ASST 5 cut(s) 152, 192, 205, 383, 401
SfaNI GCATC 1 cut(s) 297
Sse9I AATT 4 cut(s) 134, 174, 283, 403
TaiI ACGT 1 cut(s) 205
TaqI TCGA 2 cut(s) 184, 371
TasI AATT 4 cut(s) 134, 174, 283, 403
TatI WGTACW 1 cut(s) 77
TfiI GAWTC 1 cut(s) 322
Tru1I TTAA 1 cut(s) 221
Tru9I TTAA 1 cut(s) 221
TspDTI ATGAA 1 cut(s) 105
XapI RAATTY 1 cut(s) 174
ZrmI AGTACT 1 cut(s) 79
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.