Rw2G021370

F-box FBD LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
OG0000467
Physical Location & Seq
Forward (+)
29632693 .. 29640997
8305 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G021370.1

Sequence Viewer

Length: 1095 bp
ATGGGAAACATCTTTGCCAACTGTTTTACTTGTAAACAAAAGAGTGGTTCTTCAGCTGACAGAATCAGTGATCTCCCAGATGATATATTGCATGTCATACTCTCATTCTTACCTTTCAAATCCGTTGGGCAAACAGCTGTCTTATCTCGAAGATGGAATGATGTATGGTCTTCCTATTGTAAGATCAAATATGGACATAACACATATCATCATAAAAAAACTATAATATACTGTACCCATGCCGCAAAATTTCCTTGCCAAGAGTTGGGGGGGGTTCCGAACAAATCTTGTTTGTCTAGGGTTGAGGAACTTGTACTTGATATCAGCTTGAGTTCTGGAAACACATCTGATTTGCCTCAATGTCAACTCATGTGCCACTCATTAAGGAGTAGTAGCTGTGGGAATTCAAAGGCATGGCTAGGGTTTCCCTCGTCTTATGTTTGCTTTGGGTGTGGATTTTTTGCTGGTTCTTCATTCCCTTATCTCGAAAAGTTGAACTTAGAGCGCTGTAGAGGGAGGAGTGATCTCAAAATTTGCTGTCCAAACCTAAAACATGTAGAGGTATTTGATATGGAATTAAATAGTCTGGACATCTCCGGAATGAGACTGGAGGAGTTGCGAGTCTGGTTTTGTTTTCAAGAGTATATCAATGGAAGTTGGGTCAACATTTTTGCACCGAATCTACAATCATTCTCTTGGGGTTATTCAGGCATTACTGAAAGGTGTTCGATCCCGAGCTTTCCTATGCTCAAAAGATCTTTCATGAAGTCCCCCCTTACAACGAAGAAGATTAATAATAACAGTGTTGTCGATCTTCTTTCTGCTTCATCCCAAGTTGAAGACTTTATAATATCCGATCACTACCTCCAGATTCTATCAGAAATATATTCTGAATTAGGCGGTCTACCATTCTCATTTATGAAACTGAAAACCTTGAGAATTGGGAGTCCAATGAAGCAAAGATATATCCCTGGTATGGCATGCCTGTTCAAGAGCTCTCCCGTGGTCCACAACCTCGAGATTTGTTTTTACTCTTACGAAGAAGATGGCAAGTGGAACAACCAATCCTTGGATGATGCCAATTGCAGCCAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBD

Protein Analysis

364

Amino Acids

41.15

Weight (kDa)

8.02

Isoelectric Point (pI)

58.42

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 22 - 60 8.1e-10 F-box domain
F-box-like PF12937 22 - 55 3.4e-06 F-box-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000467)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g02550 FvH4_6g26921 FvH4_6g45630
malus_domestica MD01G1113200.v1.1 MD09G1101600.v1.1 MD17G1084600.v1.1
prunus_persica Prupe.3G224400_v2.0.a1 Prupe.3G224500_v2.0.a1 Prupe.3G224600_v2.0.a1
pyrus_communis pycom02g19930 pycom09g00760 pycom09g00770 pycom17g08170
rosa_chinensis RchiOBHm_Chr1g0350511 RchiOBHm_Chr2g0086171 RchiOBHm_Chr2g0117831 RchiOBHm_Chr3g0450391 RchiOBHm_Chr4g0409631 RchiOBHm_Chr5g0039731
rosa_laevigata RLG00000008538 RLG00000018375 RLG00000021415 RLG00000028481 RLG00000033926 RLG00000033937 RLG00000033938 RLG00000033939 RLG00000033941
rosa_multiflora Rmu_sc0000103.1_g000011 Rmu_sc0000330.1_g000009 Rmu_sc0000652.1_g000002 Rmu_sc0001507.1_g000017 Rmu_sc0004020.1_g000010 Rmu_sc0026676.1_g000001 Rmu_ssc0000083.1_g000022 Rmu_ssc0000400.1_g000021
rosa_roxburghii Rroxscaffold_1G00040760 Rroxscaffold_1G00041490 Rroxscaffold_1G00041500 Rroxscaffold_1G00041630 Rroxscaffold_2G00087990 Rroxscaffold_2G00126200 Rroxscaffold_4G00304800 Rroxscaffold_5G00354160 Rroxscaffold_5G00354170
rosa_rugosa Rorug01G0211500 Rorug02G0214300 Rorug02G0496800 Rorug02G0627700 Rorug04G0095600 Rorug05G0181700
rosa_samantha Rh1AG226300 Rh1BG194700 Rh1CG211100 Rh1DG222900 Rh2AG270500 Rh2AG270600 Rh2AG562900 Rh2AG563000 Rh2BG281900 Rh2BG282000 Rh2BG575700 Rh2CG269300 Rh2CG269400 Rh2DG278300 Rh2DG296200 Rh2DG585900 Rh3AG028000 Rh3AG028100 Rh3BG028500 Rh3BG028600 Rh3CG027300 Rh3CG027400 Rh3DG028400 Rh3DG028500 Rh4BG156800 Rh4CG167300 Rh4CG167400 Rh4DG151100 Rh5AG268000 Rh5BG272400 Rh5BG272500 Rh5CG304000 Rh5CG305000 Rh5CG305100 Rh5DG280500
rosa_wichuraiana Rw1G019530 Rw2G021370 Rw4G012860 Rw4G012970 Rw5G025070

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 848
AccB7I CCANNNNNTGG 2 cut(s) 265, 1069
AccI GTMKAC 1 cut(s) 904
AccIII TCCGGA 1 cut(s) 596
AciI CCGC 2 cut(s) 243, 900
AclWI GGATC 1 cut(s) 724
AcsI RAATTY 3 cut(s) 248, 403, 531
AcuI CTGAAG 1 cut(s) 36
AfaI GTAC 2 cut(s) 235, 315
AfeI AGCGCT 1 cut(s) 506
AfiI CCNNNNNNNGG 3 cut(s) 265, 976, 1069
AflIII ACRYGT 1 cut(s) 553
AgsI TTSAA 6 cut(s) 118, 408, 496, 638, 839, 991
AjnI CCWGG 1 cut(s) 970
AloI GAACNNNNNNTCC 2 cut(s) 1049, 1081
AluBI AGCT 6 cut(s) 56, 137, 327, 396, 738, 996
AluI AGCT 6 cut(s) 56, 137, 327, 396, 738, 996
Alw21I GWGCWC 1 cut(s) 998
Alw26I GTCTC 1 cut(s) 598
AlwI GGATC 1 cut(s) 724
Ama87I CYCGRG 2 cut(s) 733, 1016
Aor13HI TCCGGA 1 cut(s) 596
Aor51HI AGCGCT 1 cut(s) 506
ApeKI GCWGC 1 cut(s) 1086
ApoI RAATTY 3 cut(s) 248, 403, 531
AseI ATTAAT 1 cut(s) 792
AspLEI GCGC 1 cut(s) 507
AspS9I GGNCC 1 cut(s) 1006
AvaI CYCGRG 2 cut(s) 733, 1016
AvaII GGWCC 1 cut(s) 1006
BanII GRGCYC 1 cut(s) 998
BbsI GAAGAC 2 cut(s) 162, 846
Bbv12I GWGCWC 1 cut(s) 998
BccI CCATC 2 cut(s) 147, 1040
BciT130I CCWGG 1 cut(s) 972
BcoDI GTCTC 1 cut(s) 598
BfaI CTAG 2 cut(s) 297, 419
BfmI CTRYAG 1 cut(s) 508
BfoI RGCGCY 1 cut(s) 508
BglII AGATCT 1 cut(s) 755
BisI GCNGC 2 cut(s) 243, 1087
BlsI GCNGC 2 cut(s) 244, 1088
Bme1390I CCNGG 1 cut(s) 972
Bme18I GGWCC 1 cut(s) 1006
BmeT110I CYCGRG 2 cut(s) 733, 1016
BmgT120I GGNCC 1 cut(s) 1006
BmiI GGNNCC 1 cut(s) 276
BmrFI CCNGG 1 cut(s) 972
BmsI GCATC 1 cut(s) 1066
BpiI GAAGAC 2 cut(s) 162, 846
BpmI CTGGAG 2 cut(s) 629, 851
BpuEI CTTGAG 2 cut(s) 349, 955
BsaJI CCNNGG 3 cut(s) 970, 1002, 1068
BsaWI WCCGGW 1 cut(s) 596
Bsc4I CCNNNNNNNGG 3 cut(s) 265, 976, 1069
Bse1I ACTGG 1 cut(s) 612
BseAI TCCGGA 1 cut(s) 596
BseBI CCWGG 1 cut(s) 972
BseDI CCNNGG 3 cut(s) 970, 1002, 1068
BseGI GGATG 2 cut(s) 827, 1078
BseLI CCNNNNNNNGG 3 cut(s) 265, 976, 1069
BseNI ACTGG 1 cut(s) 612
BseRI GAGGAG 2 cut(s) 532, 626
BsiHKAI GWGCWC 1 cut(s) 998
BsiHKCI CYCGRG 2 cut(s) 733, 1016
BsiSI CCGG 1 cut(s) 597
BslFI GGGAC 1 cut(s) 754
BslI CCNNNNNNNGG 3 cut(s) 265, 976, 1069
BsmAI GTCTC 1 cut(s) 598
BsmFI GGGAC 1 cut(s) 754
BsoBI CYCGRG 2 cut(s) 733, 1016
Bsp1286I GDGCHC 1 cut(s) 998
Bsp13I TCCGGA 1 cut(s) 596
Bsp143I GATC 7 cut(s) 70, 183, 523, 729, 755, 811, 856
BspACI CCGC 2 cut(s) 243, 900
BspEI TCCGGA 1 cut(s) 596
BspHI TCATGA 1 cut(s) 762
BspLI GGNNCC 1 cut(s) 276
BspPI GGATC 1 cut(s) 724
BsrI ACTGG 1 cut(s) 612
BssECI CCNNGG 3 cut(s) 970, 1002, 1068
BssMI GATC 7 cut(s) 70, 183, 523, 729, 755, 811, 856
BssT1I CCWWGG 1 cut(s) 1068
Bst2UI CCWGG 1 cut(s) 972
Bst4CI ACNGT 3 cut(s) 23, 233, 803
BstC8I GCNNGC 1 cut(s) 982
BstDEI CTNAG 1 cut(s) 499
BstDSI CCRYGG 1 cut(s) 1002
BstF5I GGATG 2 cut(s) 827, 1078
BstH2I RGCGCY 1 cut(s) 508
BstHHI GCGC 1 cut(s) 507
BstKTI GATC 7 cut(s) 73, 186, 526, 732, 758, 814, 859
BstMAI GTCTC 1 cut(s) 598
BstMBI GATC 7 cut(s) 70, 183, 523, 729, 755, 811, 856
BstNI CCWGG 1 cut(s) 972
BstNSI RCATGY 3 cut(s) 95, 557, 984
BstSCI CCNGG 1 cut(s) 970
BstSFI CTRYAG 1 cut(s) 508
BstV2I GAAGAC 2 cut(s) 162, 846
BstX2I RGATCY 1 cut(s) 755
BstYI RGATCY 1 cut(s) 755
BtgI CCRYGG 1 cut(s) 1002
BtsCI GGATG 2 cut(s) 827, 1078
BtsIMutI CAGTG 2 cut(s) 73, 808
Cac8I GCNNGC 1 cut(s) 982
CciI TCATGA 1 cut(s) 762
CfoI GCGC 1 cut(s) 507
Cfr13I GGNCC 1 cut(s) 1006
Csp6I GTAC 2 cut(s) 234, 314
CviAII CATG 7 cut(s) 92, 239, 370, 414, 554, 763, 981
CviJI RGCY 8 cut(s) 56, 137, 327, 396, 418, 738, 996, 1089
CviKI_1 RGCY 8 cut(s) 56, 137, 327, 396, 418, 738, 996, 1089
CviQI GTAC 2 cut(s) 234, 314
DdeI CTNAG 1 cut(s) 499
DpnI GATC 7 cut(s) 72, 185, 525, 731, 757, 813, 858
DpnII GATC 7 cut(s) 70, 183, 523, 729, 755, 811, 856
Ecl136II GAGCTC 1 cut(s) 996
Eco130I CCWWGG 1 cut(s) 1068
Eco24I GRGCYC 1 cut(s) 998
Eco32I GATATC 1 cut(s) 322
Eco47I GGWCC 1 cut(s) 1006
Eco47III AGCGCT 1 cut(s) 506
Eco53kI GAGCTC 1 cut(s) 996
Eco57I CTGAAG 1 cut(s) 36
Eco88I CYCGRG 2 cut(s) 733, 1016
EcoICRI GAGCTC 1 cut(s) 996
EcoRI GAATTC 1 cut(s) 403
EcoRII CCWGG 1 cut(s) 970
EcoRV GATATC 1 cut(s) 322
EcoT14I CCWWGG 1 cut(s) 1068
EcoT38I GRGCYC 1 cut(s) 998
ErhI CCWWGG 1 cut(s) 1068
FaeI CATG 7 cut(s) 95, 242, 373, 417, 557, 766, 984
FalI AAGNNNNNCTT 2 cut(s) 482, 514
FaqI GGGAC 1 cut(s) 754
FatI CATG 7 cut(s) 91, 238, 369, 413, 553, 762, 980
FblI GTMKAC 1 cut(s) 904
Fnu4HI GCNGC 2 cut(s) 243, 1087
FokI GGATG 2 cut(s) 814, 1085
FriOI GRGCYC 1 cut(s) 998
Fsp4HI GCNGC 2 cut(s) 243, 1087
FspBI CTAG 2 cut(s) 297, 419
GlaI GCGC 1 cut(s) 506
GluI GCNGC 2 cut(s) 243, 1087
GsuI CTGGAG 2 cut(s) 629, 851
HaeII RGCGCY 1 cut(s) 508
HapII CCGG 1 cut(s) 597
HhaI GCGC 1 cut(s) 507
Hin1II CATG 7 cut(s) 95, 242, 373, 417, 557, 766, 984
Hin6I GCGC 1 cut(s) 505
HinP1I GCGC 1 cut(s) 505
HincII GTYRAC 2 cut(s) 365, 664
HindII GTYRAC 2 cut(s) 365, 664
HinfI GANTC 5 cut(s) 63, 621, 679, 871, 946
HpaII CCGG 1 cut(s) 597
Hpy166II GTNNAC 5 cut(s) 35, 365, 664, 905, 1009
Hpy188I TCNGA 5 cut(s) 279, 349, 856, 880, 892
Hpy8I GTNNAC 5 cut(s) 35, 365, 664, 905, 1009
HpyCH4III ACNGT 3 cut(s) 23, 233, 803
HpyCH4V TGCA 3 cut(s) 91, 674, 1086
HpyF3I CTNAG 1 cut(s) 499
Hsp92II CATG 7 cut(s) 95, 242, 373, 417, 557, 766, 984
HspAI GCGC 1 cut(s) 505
Kpn2I TCCGGA 1 cut(s) 596
Kzo9I GATC 7 cut(s) 70, 183, 523, 729, 755, 811, 856
LweI GCATC 1 cut(s) 1066
MaeI CTAG 2 cut(s) 297, 419
MalI GATC 7 cut(s) 72, 185, 525, 731, 757, 813, 858
MboI GATC 7 cut(s) 70, 183, 523, 729, 755, 811, 856
MfeI CAATTG 1 cut(s) 1081
MflI RGATCY 1 cut(s) 755
MhlI GDGCHC 1 cut(s) 998
MluCI AATT 7 cut(s) 248, 403, 531, 575, 893, 939, 1081
MlyI GAGTC 2 cut(s) 630, 955
MnlI CCTC 9 cut(s) 298, 366, 439, 506, 510, 553, 604, 875, 1025
MroI TCCGGA 1 cut(s) 596
MseI TTAA 3 cut(s) 383, 578, 792
MspA1I CMGCKG 2 cut(s) 56, 137
MspI CCGG 1 cut(s) 597
MspR9I CCNGG 1 cut(s) 972
MunI CAATTG 1 cut(s) 1081
MvaI CCWGG 1 cut(s) 972
NdeII GATC 7 cut(s) 70, 183, 523, 729, 755, 811, 856
NlaIII CATG 7 cut(s) 95, 242, 373, 417, 557, 766, 984
NlaIV GGNNCC 1 cut(s) 276
NspI RCATGY 3 cut(s) 95, 557, 984
PaeI GCATGC 1 cut(s) 984
PaeR7I CTCGAG 1 cut(s) 1016
PagI TCATGA 1 cut(s) 762
PciI ACATGT 1 cut(s) 553
PfeI GAWTC 3 cut(s) 63, 679, 871
PflMI CCANNNNNTGG 2 cut(s) 265, 1069
PkrI GCNGC 2 cut(s) 244, 1088
PleI GAGTC 2 cut(s) 629, 954
PpsI GAGTC 2 cut(s) 629, 954
PscI ACATGT 1 cut(s) 553
PshBI ATTAAT 1 cut(s) 792
PsiI TTATAA 1 cut(s) 848
Psp124BI GAGCTC 1 cut(s) 998
Psp6I CCWGG 1 cut(s) 970
PspGI CCWGG 1 cut(s) 970
PspN4I GGNNCC 1 cut(s) 276
PspPI GGNCC 1 cut(s) 1006
PsuI RGATCY 1 cut(s) 755
PvuII CAGCTG 2 cut(s) 56, 137
RsaI GTAC 2 cut(s) 235, 315
RsaNI GTAC 2 cut(s) 234, 314
SacI GAGCTC 1 cut(s) 998
SaqAI TTAA 3 cut(s) 383, 578, 792
SatI GCNGC 2 cut(s) 243, 1087
Sau3AI GATC 7 cut(s) 70, 183, 523, 729, 755, 811, 856
Sau96I GGNCC 1 cut(s) 1006
SchI GAGTC 2 cut(s) 630, 955
ScrFI CCNGG 1 cut(s) 972
SduI GDGCHC 1 cut(s) 998
SfaNI GCATC 1 cut(s) 1066
SfcI CTRYAG 1 cut(s) 508
Sfr274I CTCGAG 1 cut(s) 1016
SinI GGWCC 1 cut(s) 1006
SlaI CTCGAG 1 cut(s) 1016
SmlI CTYRAG 3 cut(s) 328, 934, 1016
SmoI CTYRAG 3 cut(s) 328, 934, 1016
SphI GCATGC 1 cut(s) 984
Sse9I AATT 7 cut(s) 248, 403, 531, 575, 893, 939, 1081
SsiI CCGC 2 cut(s) 243, 900
SspMI CTAG 2 cut(s) 297, 419
SstI GAGCTC 1 cut(s) 998
StyD4I CCNGG 1 cut(s) 970
StyI CCWWGG 1 cut(s) 1068
TaaI ACNGT 3 cut(s) 23, 233, 803
TaqI TCGA 5 cut(s) 148, 486, 728, 810, 1017
TasI AATT 7 cut(s) 248, 403, 531, 575, 893, 939, 1081
TatI WGTACW 1 cut(s) 313
TauI GCSGC 1 cut(s) 245
TfiI GAWTC 3 cut(s) 63, 679, 871
Tru1I TTAA 3 cut(s) 383, 578, 792
Tru9I TTAA 3 cut(s) 383, 578, 792
TscAI CASTG 2 cut(s) 73, 808
TseI GCWGC 1 cut(s) 1086
TspDTI ATGAA 6 cut(s) 462, 751, 779, 816, 935, 968
TspGWI ACGGA 1 cut(s) 112
TspRI CASTG 2 cut(s) 73, 808
Van91I CCANNNNNTGG 2 cut(s) 265, 1069
VpaK11BI GGWCC 1 cut(s) 1006
VspI ATTAAT 1 cut(s) 792
XapI RAATTY 3 cut(s) 248, 403, 531
XceI RCATGY 3 cut(s) 95, 557, 984
XhoI CTCGAG 1 cut(s) 1016
XmiI GTMKAC 1 cut(s) 904
XspI CTAG 2 cut(s) 297, 419
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.