Rmu_ssc0000400.1_g000021

F-box FBD LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000400.1
OG0000467
Physical Location & Seq
Forward (+)
94188 .. 97730
3543 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_ssc0000400.1_g000021.1.cds

Sequence Viewer

Length: 933 bp
atgagccacgctcatactaccgccagcggtgccaactactatcgagggtgtgacctacggaaacacagccaagtaggttatcacctgagccctagcacatcccaagatcaccactgccgcgccaccactcgccacgccaagatcacctcgctgaagcatcagaagctgagaactgaggcatatcagtctcacatggaaaacaaggaagagatcagtcccttccccacctataaaagaatggatctatatagcatggacatctctggaatgagactggaggagttgttttgtgctgaaaattgcatcgatggttgggtcaacatttttgccccgaatctacaatacttgtactggggcaatccaattactgagaagtgttccatccagagctttcctacgcccaaaagatcttgcattggttgttcgtttctgttcggcataacaaagacaaatatttttcacaacagtgttatcaatcttctttcccattcatcccaagctgaaatccttgagatactcgatgactacctcgaaattctatcagacatttatgttgaatttggtggtgtacctttctcatttggcaaacttgaaaccttgaaaattggcggaggcggcggcggcgcgcggcttgcaggagggaggccggaggcatcttggactgttctaggcagtgttcaaggtcagaggaggtcggggttgcaggttctgggcagcaacccgacctgcaactgcaggttttctgggcagccctccaacgacgtcgccggcgactccaccgactgcagactgctccgcccgacccctggcgtccttccggcaaccctcgccgctccgtcgcaccccatctcgtcgttcccattttggaaagatatcatgcgtctcaaacggatattctggccaaaagttgatcccaatctgcttcgcaattaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBD

Protein Analysis

310

Amino Acids

34.53

Weight (kDa)

8.64

Isoelectric Point (pI)

54.16

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000467)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g02550 FvH4_6g26921 FvH4_6g45630
malus_domestica MD01G1113200.v1.1 MD09G1101600.v1.1 MD17G1084600.v1.1
prunus_persica Prupe.3G224400_v2.0.a1 Prupe.3G224500_v2.0.a1 Prupe.3G224600_v2.0.a1
pyrus_communis pycom02g19930 pycom09g00760 pycom09g00770 pycom17g08170
rosa_chinensis RchiOBHm_Chr1g0350511 RchiOBHm_Chr2g0086171 RchiOBHm_Chr2g0117831 RchiOBHm_Chr3g0450391 RchiOBHm_Chr4g0409631 RchiOBHm_Chr5g0039731
rosa_laevigata RLG00000008538 RLG00000018375 RLG00000021415 RLG00000028481 RLG00000033926 RLG00000033937 RLG00000033938 RLG00000033939 RLG00000033941
rosa_multiflora Rmu_sc0000103.1_g000011 Rmu_sc0000330.1_g000009 Rmu_sc0000652.1_g000002 Rmu_sc0001507.1_g000017 Rmu_sc0004020.1_g000010 Rmu_sc0026676.1_g000001 Rmu_ssc0000083.1_g000022 Rmu_ssc0000400.1_g000021
rosa_roxburghii Rroxscaffold_1G00040760 Rroxscaffold_1G00041490 Rroxscaffold_1G00041500 Rroxscaffold_1G00041630 Rroxscaffold_2G00087990 Rroxscaffold_2G00126200 Rroxscaffold_4G00304800 Rroxscaffold_5G00354160 Rroxscaffold_5G00354170
rosa_rugosa Rorug01G0211500 Rorug02G0214300 Rorug02G0496800 Rorug02G0627700 Rorug04G0095600 Rorug05G0181700
rosa_samantha Rh1AG226300 Rh1BG194700 Rh1CG211100 Rh1DG222900 Rh2AG270500 Rh2AG270600 Rh2AG562900 Rh2AG563000 Rh2BG281900 Rh2BG282000 Rh2BG575700 Rh2CG269300 Rh2CG269400 Rh2DG278300 Rh2DG296200 Rh2DG585900 Rh3AG028000 Rh3AG028100 Rh3BG028500 Rh3BG028600 Rh3CG027300 Rh3CG027400 Rh3DG028400 Rh3DG028500 Rh4BG156800 Rh4CG167300 Rh4CG167400 Rh4DG151100 Rh5AG268000 Rh5BG272400 Rh5BG272500 Rh5CG304000 Rh5CG305000 Rh5CG305100 Rh5DG280500
rosa_wichuraiana Rw1G019530 Rw2G021370 Rw4G012860 Rw4G012970 Rw5G025070

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 765
Acc36I ACCTGC 3 cut(s) 694, 726, 734
AccB1I GGYRCC 1 cut(s) 29
AccBSI CCGCTC 1 cut(s) 833
AccII CGCG 3 cut(s) 120, 626, 628
AclWI GGATC 2 cut(s) 249, 905
AcoI YGGCCR 1 cut(s) 899
AcsI RAATTY 2 cut(s) 534, 557
AcuI CTGAAG 1 cut(s) 173
AcyI GRCGYC 2 cut(s) 762, 810
AfaI GTAC 2 cut(s) 350, 570
AfiI CCNNNNNNNGG 1 cut(s) 806
AgsI TTSAA 4 cut(s) 557, 593, 601, 680
AjnI CCWGG 1 cut(s) 805
AleI CACNNNNGTG 1 cut(s) 465
AluBI AGCT 3 cut(s) 166, 390, 500
AluI AGCT 3 cut(s) 166, 390, 500
Alw26I GTCTC 3 cut(s) 192, 265, 887
AlwI GGATC 2 cut(s) 249, 905
AlwNI CAGNNNCTG 2 cut(s) 166, 709
AoxI GGCC 2 cut(s) 644, 899
ApeKI GCWGC 2 cut(s) 714, 748
ApoI RAATTY 2 cut(s) 534, 557
AspLEI GCGC 3 cut(s) 122, 626, 628
AsuHPI GGTGA 3 cut(s) 74, 101, 136
BalI TGGCCA 1 cut(s) 901
BanI GGYRCC 1 cut(s) 29
BanII GRGCYC 1 cut(s) 92
BbvI GCAGC 2 cut(s) 726, 760
BccI CCATC 3 cut(s) 302, 389, 854
BciT130I CCWGG 1 cut(s) 807
BcoDI GTCTC 3 cut(s) 192, 265, 887
BfaI CTAG 2 cut(s) 93, 668
BfmI CTRYAG 2 cut(s) 733, 784
BfuAI ACCTGC 3 cut(s) 694, 726, 734
BglII AGATCT 1 cut(s) 407
BisI GCNGC 8 cut(s) 118, 616, 619, 622, 629, 715, 749, 831
BlsI GCNGC 8 cut(s) 119, 617, 620, 623, 630, 716, 750, 832
Bme1390I CCNGG 1 cut(s) 807
BmiI GGNNCC 1 cut(s) 31
BmrFI CCNGG 1 cut(s) 807
BmrI ACTGGG 1 cut(s) 361
BmsI GCATC 3 cut(s) 166, 312, 662
BmuI ACTGGG 1 cut(s) 361
BplI GAGNNNNNCTC 1 cut(s) 27
BpmI CTGGAG 1 cut(s) 296
Bpu10I CCTNAGC 1 cut(s) 86
BpuEI CTTGAG 1 cut(s) 530
Bsa29I ATCGAT 1 cut(s) 306
BsaBI GATNNNNATC 1 cut(s) 915
BsaHI GRCGYC 2 cut(s) 762, 810
BsaJI CCNNGG 1 cut(s) 805
BsaXI ACNNNNNCTCC 2 cut(s) 269, 299
Bsc4I CCNNNNNNNGG 1 cut(s) 806
Bse118I RCCGGY 1 cut(s) 767
Bse1I ACTGG 2 cut(s) 279, 356
Bse8I GATNNNNATC 1 cut(s) 915
BseBI CCWGG 1 cut(s) 807
BseCI ATCGAT 1 cut(s) 306
BseDI CCNNGG 1 cut(s) 805
BseGI GGATG 3 cut(s) 98, 381, 491
BseJI GATNNNNATC 1 cut(s) 915
BseLI CCNNNNNNNGG 1 cut(s) 806
BseMII CTCAG 4 cut(s) 77, 158, 165, 360
BseNI ACTGG 2 cut(s) 279, 356
BsePI GCGCGC 1 cut(s) 624
BseRI GAGGAG 2 cut(s) 293, 703
BseXI GCAGC 2 cut(s) 726, 760
Bsh1236I CGCG 3 cut(s) 120, 626, 628
BshFI GGCC 2 cut(s) 646, 901
BshNI GGYRCC 1 cut(s) 29
BshVI ATCGAT 1 cut(s) 306
BsiSI CCGG 3 cut(s) 647, 768, 818
BslFI GGGAC 1 cut(s) 201
BslI CCNNNNNNNGG 1 cut(s) 806
BsmAI GTCTC 3 cut(s) 192, 265, 887
BsmBI CGTCTC 1 cut(s) 887
BsmFI GGGAC 1 cut(s) 201
BsnI GGCC 2 cut(s) 646, 901
Bsp1286I GDGCHC 1 cut(s) 92
Bsp143I GATC 6 cut(s) 106, 141, 210, 241, 407, 910
BspANI GGCC 2 cut(s) 646, 901
BspCNI CTCAG 4 cut(s) 78, 159, 166, 361
BspDI ATCGAT 1 cut(s) 306
BspFNI CGCG 3 cut(s) 120, 626, 628
BspLI GGNNCC 1 cut(s) 31
BspMAI CTGCAG 2 cut(s) 737, 788
BspMI ACCTGC 3 cut(s) 694, 726, 734
BspPI GGATC 2 cut(s) 249, 905
BspT107I GGYRCC 1 cut(s) 29
BsrBI CCGCTC 1 cut(s) 833
BsrFI RCCGGY 1 cut(s) 767
BsrI ACTGG 2 cut(s) 279, 356
BssAI RCCGGY 1 cut(s) 767
BssECI CCNNGG 1 cut(s) 805
BssHII GCGCGC 1 cut(s) 624
BssMI GATC 6 cut(s) 106, 141, 210, 241, 407, 910
BssNI GRCGYC 2 cut(s) 762, 810
Bst2UI CCWGG 1 cut(s) 807
Bst4CI ACNGT 2 cut(s) 467, 664
Bst6I CTCTTC 1 cut(s) 201
BstACI GRCGYC 2 cut(s) 762, 810
BstC8I GCNNGC 4 cut(s) 25, 626, 633, 769
BstDEI CTNAG 4 cut(s) 86, 167, 174, 369
BstF5I GGATG 3 cut(s) 98, 381, 491
BstFNI CGCG 3 cut(s) 120, 626, 628
BstHHI GCGC 3 cut(s) 122, 626, 628
BstKTI GATC 6 cut(s) 109, 144, 213, 244, 410, 913
BstMAI GTCTC 3 cut(s) 192, 265, 887
BstMBI GATC 6 cut(s) 106, 141, 210, 241, 407, 910
BstMWI GCNNNNNNNGC 6 cut(s) 29, 163, 615, 621, 632, 827
BstNI CCWGG 1 cut(s) 807
BstSCI CCNGG 1 cut(s) 805
BstSFI CTRYAG 2 cut(s) 733, 784
BstUI CGCG 3 cut(s) 120, 626, 628
BstV1I GCAGC 2 cut(s) 726, 760
BstX2I RGATCY 2 cut(s) 241, 407
BstYI RGATCY 2 cut(s) 241, 407
Bsu15I ATCGAT 1 cut(s) 306
BsuRI GGCC 2 cut(s) 646, 901
BsuTUI ATCGAT 1 cut(s) 306
BtsCI GGATG 3 cut(s) 98, 381, 491
BtsI GCAGTG 2 cut(s) 112, 679
BtsIMutI CAGTG 3 cut(s) 112, 472, 679
BveI ACCTGC 3 cut(s) 694, 726, 734
Cac8I GCNNGC 4 cut(s) 25, 626, 633, 769
CaiI CAGNNNCTG 2 cut(s) 166, 709
CfoI GCGC 3 cut(s) 122, 626, 628
Cfr10I RCCGGY 1 cut(s) 767
ClaI ATCGAT 1 cut(s) 306
CseI GACGC 2 cut(s) 799, 869
Csp6I GTAC 2 cut(s) 349, 569
CviAII CATG 3 cut(s) 193, 253, 877
CviQI GTAC 2 cut(s) 349, 569
DdeI CTNAG 4 cut(s) 86, 167, 174, 369
DpnI GATC 6 cut(s) 108, 143, 212, 243, 409, 912
DpnII GATC 6 cut(s) 106, 141, 210, 241, 407, 910
EaeI YGGCCR 1 cut(s) 899
Eam1104I CTCTTC 1 cut(s) 201
EarI CTCTTC 1 cut(s) 201
EciI GGCGGA 2 cut(s) 624, 785
Eco24I GRGCYC 1 cut(s) 92
Eco32I GATATC 1 cut(s) 874
Eco57I CTGAAG 1 cut(s) 173
EcoRII CCWGG 1 cut(s) 805
EcoRV GATATC 1 cut(s) 874
EcoT38I GRGCYC 1 cut(s) 92
Esp3I CGTCTC 1 cut(s) 887
FaeI CATG 3 cut(s) 196, 256, 880
FaqI GGGAC 1 cut(s) 201
FatI CATG 3 cut(s) 192, 252, 876
Fnu4HI GCNGC 8 cut(s) 118, 616, 619, 622, 629, 715, 749, 831
FokI GGATG 3 cut(s) 85, 368, 478
FriOI GRGCYC 1 cut(s) 92
Fsp4HI GCNGC 8 cut(s) 118, 616, 619, 622, 629, 715, 749, 831
FspBI CTAG 2 cut(s) 93, 668
GlaI GCGC 3 cut(s) 121, 625, 627
GluI GCNGC 8 cut(s) 118, 616, 619, 622, 629, 715, 749, 831
GsuI CTGGAG 1 cut(s) 296
HaeIII GGCC 2 cut(s) 646, 901
HapII CCGG 3 cut(s) 647, 768, 818
HgaI GACGC 2 cut(s) 799, 869
HhaI GCGC 3 cut(s) 122, 626, 628
Hin1I GRCGYC 2 cut(s) 762, 810
Hin1II CATG 3 cut(s) 196, 256, 880
Hin6I GCGC 3 cut(s) 120, 624, 626
HinP1I GCGC 3 cut(s) 120, 624, 626
HincII GTYRAC 1 cut(s) 319
HindII GTYRAC 1 cut(s) 319
HinfI GANTC 2 cut(s) 334, 773
HpaII CCGG 3 cut(s) 647, 768, 818
HphI GGTGA 3 cut(s) 74, 101, 136
Hpy166II GTNNAC 2 cut(s) 319, 569
Hpy188I TCNGA 3 cut(s) 162, 544, 687
Hpy188III TCNNGA 2 cut(s) 264, 385
Hpy8I GTNNAC 2 cut(s) 319, 569
Hpy99I CGWCG 4 cut(s) 764, 767, 841, 856
HpyAV CCTTC 2 cut(s) 229, 824
HpyCH4III ACNGT 2 cut(s) 467, 664
HpyCH4IV ACGT 1 cut(s) 762
HpyCH4V TGCA 7 cut(s) 303, 414, 635, 703, 729, 735, 786
HpyF10VI GCNNNNNNNGC 6 cut(s) 29, 163, 615, 621, 632, 827
HpyF3I CTNAG 4 cut(s) 86, 167, 174, 369
HpySE526I ACGT 1 cut(s) 762
Hsp92I GRCGYC 2 cut(s) 762, 810
Hsp92II CATG 3 cut(s) 196, 256, 880
HspAI GCGC 3 cut(s) 120, 624, 626
KroI GCCGGC 1 cut(s) 767
KroNI GCCGGC 1 cut(s) 769
Kzo9I GATC 6 cut(s) 106, 141, 210, 241, 407, 910
LmnI GCTCC 2 cut(s) 798, 838
Lsp1109I GCAGC 2 cut(s) 726, 760
LweI GCATC 3 cut(s) 166, 312, 662
MaeI CTAG 2 cut(s) 93, 668
MaeII ACGT 1 cut(s) 762
MaeIII GTNAC 1 cut(s) 50
MalI GATC 6 cut(s) 108, 143, 212, 243, 409, 912
MbiI CCGCTC 1 cut(s) 833
MboI GATC 6 cut(s) 106, 141, 210, 241, 407, 910
MboII GAAGA 2 cut(s) 218, 470
MflI RGATCY 2 cut(s) 241, 407
MhlI GDGCHC 1 cut(s) 92
MlsI TGGCCA 1 cut(s) 901
MluCI AATT 6 cut(s) 298, 363, 534, 557, 603, 928
MluNI TGGCCA 1 cut(s) 901
MlyI GAGTC 1 cut(s) 767
MmeI TCCRAC 1 cut(s) 780
Mox20I TGGCCA 1 cut(s) 901
MreI CGCCGGCG 1 cut(s) 767
MroNI GCCGGC 1 cut(s) 767
MscI TGGCCA 1 cut(s) 901
MseI TTAA 1 cut(s) 931
MslI CAYNNNNRTG 1 cut(s) 465
Msp20I TGGCCA 1 cut(s) 901
MspA1I CMGCKG 1 cut(s) 27
MspI CCGG 3 cut(s) 647, 768, 818
MspR9I CCNGG 1 cut(s) 807
MvaI CCWGG 1 cut(s) 807
MvnI CGCG 3 cut(s) 120, 626, 628
MwoI GCNNNNNNNGC 6 cut(s) 29, 163, 615, 621, 632, 827
NaeI GCCGGC 1 cut(s) 769
NdeII GATC 6 cut(s) 106, 141, 210, 241, 407, 910
NgoMIV GCCGGC 1 cut(s) 767
NlaIII CATG 3 cut(s) 196, 256, 880
NlaIV GGNNCC 1 cut(s) 31
NmuCI GTSAC 1 cut(s) 50
OliI CACNNNNGTG 1 cut(s) 465
PauI GCGCGC 1 cut(s) 624
PcsI WCGNNNNNNNCGW 1 cut(s) 768
PdiI GCCGGC 1 cut(s) 769
PfeI GAWTC 1 cut(s) 334
PkrI GCNGC 8 cut(s) 119, 617, 620, 623, 630, 716, 750, 832
PleI GAGTC 1 cut(s) 767
PpsI GAGTC 1 cut(s) 767
Psp6I CCWGG 1 cut(s) 805
PspGI CCWGG 1 cut(s) 805
PspN4I GGNNCC 1 cut(s) 31
PstI CTGCAG 2 cut(s) 737, 788
PstNI CAGNNNCTG 2 cut(s) 166, 709
PsuI RGATCY 2 cut(s) 241, 407
PteI GCGCGC 1 cut(s) 624
RsaI GTAC 2 cut(s) 350, 570
RsaNI GTAC 2 cut(s) 349, 569
RseI CAYNNNNRTG 1 cut(s) 465
SaqAI TTAA 1 cut(s) 931
SatI GCNGC 8 cut(s) 118, 616, 619, 622, 629, 715, 749, 831
Sau3AI GATC 6 cut(s) 106, 141, 210, 241, 407, 910
SchI GAGTC 1 cut(s) 767
ScrFI CCNGG 1 cut(s) 807
SduI GDGCHC 1 cut(s) 92
SfaNI GCATC 3 cut(s) 166, 312, 662
SfcI CTRYAG 2 cut(s) 733, 784
SgrAI CRCCGGYG 1 cut(s) 767
SmiMI CAYNNNNRTG 1 cut(s) 465
SmlI CTYRAG 1 cut(s) 509
SmoI CTYRAG 1 cut(s) 509
Sse9I AATT 6 cut(s) 298, 363, 534, 557, 603, 928
SspI AATATT 1 cut(s) 454
SspMI CTAG 2 cut(s) 93, 668
StyD4I CCNGG 1 cut(s) 805
TaaI ACNGT 2 cut(s) 467, 664
TaiI ACGT 1 cut(s) 765
TaqI TCGA 4 cut(s) 43, 306, 519, 531
TasI AATT 6 cut(s) 298, 363, 534, 557, 603, 928
TatI WGTACW 1 cut(s) 348
TauI GCSGC 6 cut(s) 120, 618, 621, 624, 631, 833
TfiI GAWTC 1 cut(s) 334
Tru1I TTAA 1 cut(s) 931
Tru9I TTAA 1 cut(s) 931
TscAI CASTG 3 cut(s) 119, 472, 679
TseFI GTSAC 1 cut(s) 50
TseI GCWGC 2 cut(s) 714, 748
Tsp45I GTSAC 1 cut(s) 50
TspDTI ATGAA 1 cut(s) 480
TspGWI ACGGA 3 cut(s) 73, 825, 904
TspRI CASTG 3 cut(s) 119, 472, 679
XapI RAATTY 2 cut(s) 534, 557
XspI CTAG 2 cut(s) 93, 668
ZraI GACGTC 1 cut(s) 763
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.