pycom09g00760

F-box FBD LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr9
OG0000467
Physical Location & Seq
Reverse (-)
588641 .. 589403
763 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom09g00760.2

Sequence Viewer

Length: 567 bp
ATGCATGACAGGAAGGTCGACCGTCACCCAAGTCCCACATTGGAGAAATACTTTCAATTTCCTATCTTTGGTTGTTCTTGTAGTACCAATGTCCTACCAAATATATATTTTGGAGGTGGTTTACGATATTCATTTATAAATCTTCAGACCTTGCATATCTGTACTAGTTTGAAAAAATGTGAAATCCCAGGAATAGCATGCTTATTGAAGAGTTCTCCCGTAGTACACACTCTCATACTTGAACTATGGTCTGCAGGCCACAATGCTAGATGGAACAACCCTTTGTTGGACAGCACCGGTTGCACTGAAGAACAATACTGGCAAAATCAAGTTCAAAGTTCCAGTGCCTTCTTATGTCACCTAAATGTGGTGAAGATTTATACCAATTTCTCGGTCTTCTATTCTATGATCAACAATGTAAGATTTTTGCTTGAACATGGAAGAAGCTTGCAGGATATGAATTTTTGTTGCAGCGTCAAACCGCTATCTTTTTGGTTGAATGAAATCCGTAGAATAGAGGGTTTTCCTCGAGCATCTTCCGAAGTCAAAATCTCAGTTGCTTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBD

Protein Analysis

189

Amino Acids

21.49

Weight (kDa)

8.59

Isoelectric Point (pI)

63.25

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000467)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g02550 FvH4_6g26921 FvH4_6g45630
malus_domestica MD01G1113200.v1.1 MD09G1101600.v1.1 MD17G1084600.v1.1
prunus_persica Prupe.3G224400_v2.0.a1 Prupe.3G224500_v2.0.a1 Prupe.3G224600_v2.0.a1
pyrus_communis pycom02g19930 pycom09g00760 pycom09g00770 pycom17g08170
rosa_chinensis RchiOBHm_Chr1g0350511 RchiOBHm_Chr2g0086171 RchiOBHm_Chr2g0117831 RchiOBHm_Chr3g0450391 RchiOBHm_Chr4g0409631 RchiOBHm_Chr5g0039731
rosa_laevigata RLG00000008538 RLG00000018375 RLG00000021415 RLG00000028481 RLG00000033926 RLG00000033937 RLG00000033938 RLG00000033939 RLG00000033941
rosa_multiflora Rmu_sc0000103.1_g000011 Rmu_sc0000330.1_g000009 Rmu_sc0000652.1_g000002 Rmu_sc0001507.1_g000017 Rmu_sc0004020.1_g000010 Rmu_sc0026676.1_g000001 Rmu_ssc0000083.1_g000022 Rmu_ssc0000400.1_g000021
rosa_roxburghii Rroxscaffold_1G00040760 Rroxscaffold_1G00041490 Rroxscaffold_1G00041500 Rroxscaffold_1G00041630 Rroxscaffold_2G00087990 Rroxscaffold_2G00126200 Rroxscaffold_4G00304800 Rroxscaffold_5G00354160 Rroxscaffold_5G00354170
rosa_rugosa Rorug01G0211500 Rorug02G0214300 Rorug02G0496800 Rorug02G0627700 Rorug04G0095600 Rorug05G0181700
rosa_samantha Rh1AG226300 Rh1BG194700 Rh1CG211100 Rh1DG222900 Rh2AG270500 Rh2AG270600 Rh2AG562900 Rh2AG563000 Rh2BG281900 Rh2BG282000 Rh2BG575700 Rh2CG269300 Rh2CG269400 Rh2DG278300 Rh2DG296200 Rh2DG585900 Rh3AG028000 Rh3AG028100 Rh3BG028500 Rh3BG028600 Rh3CG027300 Rh3CG027400 Rh3DG028400 Rh3DG028500 Rh4BG156800 Rh4CG167300 Rh4CG167400 Rh4DG151100 Rh5AG268000 Rh5BG272400 Rh5BG272500 Rh5CG304000 Rh5CG305000 Rh5CG305100 Rh5DG280500
rosa_wichuraiana Rw1G019530 Rw2G021370 Rw4G012860 Rw4G012970 Rw5G025070

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 137
AasI GACNNNNNNGTC 1 cut(s) 14
AccI GTMKAC 1 cut(s) 18
AciI CCGC 1 cut(s) 482
AcsI RAATTY 1 cut(s) 460
AcuI CTGAAG 2 cut(s) 128, 327
AfaI GTAC 3 cut(s) 85, 163, 225
AfiI CCNNNNNNNGG 3 cut(s) 68, 286, 367
AgeI ACCGGT 1 cut(s) 296
AgsI TTSAA 7 cut(s) 56, 172, 208, 242, 335, 434, 499
AhlI ACTAGT 1 cut(s) 164
AjnI CCWGG 1 cut(s) 187
AluBI AGCT 1 cut(s) 447
AluI AGCT 1 cut(s) 447
Ama87I CYCGRG 1 cut(s) 528
AoxI GGCC 1 cut(s) 256
ApeKI GCWGC 1 cut(s) 471
ApoI RAATTY 1 cut(s) 460
AsiGI ACCGGT 1 cut(s) 296
AsuHPI GGTGA 3 cut(s) 17, 350, 382
AvaI CYCGRG 1 cut(s) 528
BbsI GAAGAC 1 cut(s) 388
BbvI GCAGC 1 cut(s) 483
BccI CCATC 1 cut(s) 264
BciT130I CCWGG 1 cut(s) 189
BclI TGATCA 1 cut(s) 408
BcuI ACTAGT 1 cut(s) 164
BfaI CTAG 2 cut(s) 165, 267
BfmI CTRYAG 1 cut(s) 252
BisI GCNGC 1 cut(s) 472
BlsI GCNGC 1 cut(s) 473
Bme1390I CCNGG 1 cut(s) 189
BmeT110I CYCGRG 1 cut(s) 528
BmrFI CCNGG 1 cut(s) 189
BmsI GCATC 1 cut(s) 542
BpiI GAAGAC 1 cut(s) 388
BsaJI CCNNGG 1 cut(s) 187
BsaWI WCCGGW 1 cut(s) 296
Bsc4I CCNNNNNNNGG 3 cut(s) 68, 286, 367
Bse118I RCCGGY 1 cut(s) 296
Bse1I ACTGG 2 cut(s) 323, 342
BseBI CCWGG 1 cut(s) 189
BseDI CCNNGG 1 cut(s) 187
BseLI CCNNNNNNNGG 3 cut(s) 68, 286, 367
BseMII CTCAG 1 cut(s) 567
BseNI ACTGG 2 cut(s) 323, 342
BseXI GCAGC 1 cut(s) 483
Bsh1285I CGRYCG 1 cut(s) 22
BshFI GGCC 1 cut(s) 258
BshTI ACCGGT 1 cut(s) 296
BsiEI CGRYCG 1 cut(s) 22
BsiHKCI CYCGRG 1 cut(s) 528
BsiSI CCGG 1 cut(s) 297
BslFI GGGAC 1 cut(s) 18
BslI CCNNNNNNNGG 3 cut(s) 68, 286, 367
BsmFI GGGAC 1 cut(s) 18
BsnI GGCC 1 cut(s) 258
BsoBI CYCGRG 1 cut(s) 528
Bsp143I GATC 1 cut(s) 408
BspACI CCGC 1 cut(s) 482
BspANI GGCC 1 cut(s) 258
BspCNI CTCAG 1 cut(s) 566
BspMAI CTGCAG 1 cut(s) 256
BsrFI RCCGGY 1 cut(s) 296
BsrI ACTGG 2 cut(s) 323, 342
BssAI RCCGGY 1 cut(s) 296
BssECI CCNNGG 1 cut(s) 187
BssMI GATC 1 cut(s) 408
Bst2UI CCWGG 1 cut(s) 189
Bst4CI ACNGT 1 cut(s) 23
Bst6I CTCTTC 1 cut(s) 203
BstAPI GCANNNNNTGC 1 cut(s) 300
BstC8I GCNNGC 3 cut(s) 199, 256, 449
BstDEI CTNAG 1 cut(s) 553
BstKTI GATC 1 cut(s) 411
BstMBI GATC 1 cut(s) 408
BstMCI CGRYCG 1 cut(s) 22
BstMWI GCNNNNNNNGC 1 cut(s) 300
BstNI CCWGG 1 cut(s) 189
BstNSI RCATGY 1 cut(s) 201
BstSCI CCNGG 1 cut(s) 187
BstSFI CTRYAG 1 cut(s) 252
BstV1I GCAGC 1 cut(s) 483
BstV2I GAAGAC 1 cut(s) 388
BsuRI GGCC 1 cut(s) 258
BtsIMutI CAGTG 2 cut(s) 303, 349
Cac8I GCNNGC 3 cut(s) 199, 256, 449
Cfr10I RCCGGY 1 cut(s) 296
CseI GACGC 1 cut(s) 463
Csp6I GTAC 3 cut(s) 84, 162, 224
CspAI ACCGGT 1 cut(s) 296
CviAII CATG 3 cut(s) 5, 198, 437
CviJI RGCY 2 cut(s) 258, 447
CviKI_1 RGCY 2 cut(s) 258, 447
CviQI GTAC 3 cut(s) 84, 162, 224
DdeI CTNAG 1 cut(s) 553
DpnI GATC 1 cut(s) 410
DpnII GATC 1 cut(s) 408
DrdI GACNNNNNNGTC 1 cut(s) 14
DseDI GACNNNNNNGTC 1 cut(s) 14
Eam1104I CTCTTC 1 cut(s) 203
EarI CTCTTC 1 cut(s) 203
Eco57I CTGAAG 2 cut(s) 128, 327
Eco88I CYCGRG 1 cut(s) 528
EcoRII CCWGG 1 cut(s) 187
EcoT22I ATGCAT 1 cut(s) 6
FaeI CATG 3 cut(s) 8, 201, 440
FaqI GGGAC 1 cut(s) 18
FatI CATG 3 cut(s) 4, 197, 436
FbaI TGATCA 1 cut(s) 408
FblI GTMKAC 1 cut(s) 18
Fnu4HI GCNGC 1 cut(s) 472
Fsp4HI GCNGC 1 cut(s) 472
FspBI CTAG 2 cut(s) 165, 267
GluI GCNGC 1 cut(s) 472
HaeIII GGCC 1 cut(s) 258
HapII CCGG 1 cut(s) 297
HgaI GACGC 1 cut(s) 463
Hin1II CATG 3 cut(s) 8, 201, 440
HincII GTYRAC 1 cut(s) 19
HindII GTYRAC 1 cut(s) 19
HindIII AAGCTT 1 cut(s) 445
HpaII CCGG 1 cut(s) 297
HphI GGTGA 3 cut(s) 17, 350, 382
Hpy166II GTNNAC 3 cut(s) 19, 122, 226
Hpy188I TCNGA 2 cut(s) 147, 541
Hpy188III TCNNGA 1 cut(s) 564
Hpy8I GTNNAC 3 cut(s) 19, 122, 226
HpyAV CCTTC 2 cut(s) 7, 358
HpyCH4III ACNGT 1 cut(s) 23
HpyCH4V TGCA 6 cut(s) 4, 154, 254, 303, 451, 471
HpyF10VI GCNNNNNNNGC 1 cut(s) 300
HpyF3I CTNAG 1 cut(s) 553
Hsp92II CATG 3 cut(s) 8, 201, 440
Ksp22I TGATCA 1 cut(s) 408
Kzo9I GATC 1 cut(s) 408
LpnPI CCDG 7 cut(s) 174, 201, 240, 304, 310, 355, 437
Lsp1109I GCAGC 1 cut(s) 483
LweI GCATC 1 cut(s) 542
MaeI CTAG 2 cut(s) 165, 267
MaeIII GTNAC 2 cut(s) 23, 356
MalI GATC 1 cut(s) 410
MboI GATC 1 cut(s) 408
MboII GAAGA 7 cut(s) 134, 220, 320, 385, 388, 453, 528
MluCI AATT 3 cut(s) 56, 385, 460
MmeI TCCRAC 1 cut(s) 267
MnlI CCTC 3 cut(s) 107, 511, 537
Mph1103I ATGCAT 1 cut(s) 6
MslI CAYNNNNRTG 1 cut(s) 363
MspI CCGG 1 cut(s) 297
MspR9I CCNGG 1 cut(s) 189
MvaI CCWGG 1 cut(s) 189
MwoI GCNNNNNNNGC 1 cut(s) 300
NdeII GATC 1 cut(s) 408
NlaIII CATG 3 cut(s) 8, 201, 440
NmuCI GTSAC 2 cut(s) 23, 356
NsiI ATGCAT 1 cut(s) 6
NspI RCATGY 1 cut(s) 201
PaeI GCATGC 1 cut(s) 201
PaeR7I CTCGAG 1 cut(s) 528
PinAI ACCGGT 1 cut(s) 296
PkrI GCNGC 1 cut(s) 473
PsiI TTATAA 1 cut(s) 137
Psp6I CCWGG 1 cut(s) 187
PspGI CCWGG 1 cut(s) 187
PspXI VCTCGAGB 1 cut(s) 528
PstI CTGCAG 1 cut(s) 256
RsaI GTAC 3 cut(s) 85, 163, 225
RsaNI GTAC 3 cut(s) 84, 162, 224
RseI CAYNNNNRTG 1 cut(s) 363
SalI GTCGAC 1 cut(s) 17
SatI GCNGC 1 cut(s) 472
Sau3AI GATC 1 cut(s) 408
ScrFI CCNGG 1 cut(s) 189
SetI ASST 5 cut(s) 18, 118, 152, 363, 449
SfaNI GCATC 1 cut(s) 542
SfcI CTRYAG 1 cut(s) 252
Sfr274I CTCGAG 1 cut(s) 528
SlaI CTCGAG 1 cut(s) 528
SmiMI CAYNNNNRTG 1 cut(s) 363
SmlI CTYRAG 1 cut(s) 528
SmoI CTYRAG 1 cut(s) 528
SpeI ACTAGT 1 cut(s) 164
SphI GCATGC 1 cut(s) 201
Sse9I AATT 3 cut(s) 56, 385, 460
SsiI CCGC 1 cut(s) 482
SspMI CTAG 2 cut(s) 165, 267
StyD4I CCNGG 1 cut(s) 187
TaaI ACNGT 1 cut(s) 23
TaqI TCGA 2 cut(s) 18, 529
TaqII GACCGA 1 cut(s) 382
TasI AATT 3 cut(s) 56, 385, 460
TatI WGTACW 2 cut(s) 161, 223
TscAI CASTG 2 cut(s) 310, 349
TseFI GTSAC 2 cut(s) 23, 356
TseI GCWGC 1 cut(s) 471
Tsp45I GTSAC 2 cut(s) 23, 356
TspDTI ATGAA 3 cut(s) 120, 473, 516
TspGWI ACGGA 1 cut(s) 497
TspRI CASTG 2 cut(s) 310, 349
XapI RAATTY 1 cut(s) 460
XceI RCATGY 1 cut(s) 201
XhoI CTCGAG 1 cut(s) 528
XmiI GTMKAC 1 cut(s) 18
XspI CTAG 2 cut(s) 165, 267
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.