Rorug02G0496800

F-box FBD LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0000467
Physical Location & Seq
Reverse (-)
62853599 .. 62859487
5889 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0496800.1

Sequence Viewer

Length: 1056 bp
ATGTCGGACGCACTCTGCACTCGGCTGCAGCAACAAGTAGTTCTCTCCGGTACCGCACCTAGCTCCGAGTCTCTTGATTTAGATTGCGTCATTGACGACATCCTCTCACGGCTACCGGCCAAATCGCTGCTCCGATTCCGATGTGTGTGCAAAGCATGGCGGGCCTTGATCTCCGATCCTTATTTCATCAGAAAACACCTCAGCTGCATCGACACCAAAATCAGCACCAGCTACTCTCTCCTCATCAAAGAACAAATCTTCCGATCCGCAGAGTACGAAGCAATATTGAAGTGTTTGAGCCATGATGGTCCTCTTCCAAGCAGAAGGCTTGATTTTCTGGTCCTACCACAACCTTCCCTTTGGTCCCAACATTTTTTTTCGGGGTTCGGTTATGATTCAACCAGTAATGATTACAAAGTAATACTGGCTAGCCATACATCTAGTAATGAATTTGATGTTGTTGTCTTTACGCTAAAATCGGGTTCATGGAGGAAGCTTGGAAGGCTCAACAGGTATTCCGAGGTGAGTTGGGTGAGTTTGGCAGGATGTTTAGTTAACGAAGCTCTGCATTGGGTATTGGAGGAAGAGGATGATAGGTTAATCACTTCAAGAATAGTGTCATTTGATTTAGCGGAGGAGAAATTTTATGAGATTCCATTACCCTTTCCTCCCAGTCCGGTAGATAGGCCTACATCCACTGCCGAAGTTGGAATTCTTAATAATTGCCTAACTCTGTACTTTCAAACCATGAGTTGCGAACCTGGGCGCAATTTTAAGGTGTGGGTACTGAAGGACTATGGAGTCAAGAAATCTTGGATTGAAGTCATAAGCATCCCTTCAGAGGTTCTAGATGTTGAGTATATGTACATGACATGCATTTCTGAGAATGGTGAAGTTTTGATGCGGCATCCCCAGTCAGGCTCATTGGCATTATATAATCCGAAAGAAAAGACATCTAGGATTGTCCTGGACTATGGTGGTTGCTGGTATCATACTGCTACTTATGTAGAAACTTTAGTTTCACCATTAACCGGCAGTACTGGTGCAAGAATGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBD

Protein Analysis

351

Amino Acids

39.78

Weight (kDa)

5.72

Isoelectric Point (pI)

49.34

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 30 - 64 1.3e-09 F-box domain
F-box-like PF12937 33 - 65 8.1e-08 F-box-like
FBA_3 PF08268 112 - 322 1.7e-17 F-box associated beta propeller domain
FBA_1 PF07734 124 - 340 8.8e-16 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000467)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g02550 FvH4_6g26921 FvH4_6g45630
malus_domestica MD01G1113200.v1.1 MD09G1101600.v1.1 MD17G1084600.v1.1
prunus_persica Prupe.3G224400_v2.0.a1 Prupe.3G224500_v2.0.a1 Prupe.3G224600_v2.0.a1
pyrus_communis pycom02g19930 pycom09g00760 pycom09g00770 pycom17g08170
rosa_chinensis RchiOBHm_Chr1g0350511 RchiOBHm_Chr2g0086171 RchiOBHm_Chr2g0117831 RchiOBHm_Chr3g0450391 RchiOBHm_Chr4g0409631 RchiOBHm_Chr5g0039731
rosa_laevigata RLG00000008538 RLG00000018375 RLG00000021415 RLG00000028481 RLG00000033926 RLG00000033937 RLG00000033938 RLG00000033939 RLG00000033941
rosa_multiflora Rmu_sc0000103.1_g000011 Rmu_sc0000330.1_g000009 Rmu_sc0000652.1_g000002 Rmu_sc0001507.1_g000017 Rmu_sc0004020.1_g000010 Rmu_sc0026676.1_g000001 Rmu_ssc0000083.1_g000022 Rmu_ssc0000400.1_g000021
rosa_roxburghii Rroxscaffold_1G00040760 Rroxscaffold_1G00041490 Rroxscaffold_1G00041500 Rroxscaffold_1G00041630 Rroxscaffold_2G00087990 Rroxscaffold_2G00126200 Rroxscaffold_4G00304800 Rroxscaffold_5G00354160 Rroxscaffold_5G00354170
rosa_rugosa Rorug01G0211500 Rorug02G0214300 Rorug02G0496800 Rorug02G0627700 Rorug04G0095600 Rorug05G0181700
rosa_samantha Rh1AG226300 Rh1BG194700 Rh1CG211100 Rh1DG222900 Rh2AG270500 Rh2AG270600 Rh2AG562900 Rh2AG563000 Rh2BG281900 Rh2BG282000 Rh2BG575700 Rh2CG269300 Rh2CG269400 Rh2DG278300 Rh2DG296200 Rh2DG585900 Rh3AG028000 Rh3AG028100 Rh3BG028500 Rh3BG028600 Rh3CG027300 Rh3CG027400 Rh3DG028400 Rh3DG028500 Rh4BG156800 Rh4CG167300 Rh4CG167400 Rh4DG151100 Rh5AG268000 Rh5BG272400 Rh5BG272500 Rh5CG304000 Rh5CG305000 Rh5CG305100 Rh5DG280500
rosa_wichuraiana Rw1G019530 Rw2G021370 Rw4G012860 Rw4G012970 Rw5G025070

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 800
Acc65I GGTACC 1 cut(s) 50
AccB1I GGYRCC 1 cut(s) 50
AciI CCGC 5 cut(s) 54, 160, 267, 632, 904
AclWI GGATC 2 cut(s) 170, 258
AcoI YGGCCR 1 cut(s) 117
AcsI RAATTY 3 cut(s) 449, 641, 711
AcuI CTGAAG 2 cut(s) 809, 822
AfaI GTAC 6 cut(s) 52, 275, 737, 786, 866, 1039
AfiI CCNNNNNNNGG 3 cut(s) 841, 917, 1031
AgsI TTSAA 5 cut(s) 289, 399, 609, 743, 821
AjnI CCWGG 2 cut(s) 760, 966
AloI GAACNNNNNNTCC 2 cut(s) 243, 275
AluBI AGCT 5 cut(s) 63, 204, 231, 496, 563
AluI AGCT 5 cut(s) 63, 204, 231, 496, 563
Alw26I GTCTC 1 cut(s) 75
AlwI GGATC 2 cut(s) 170, 258
AoxI GGCC 3 cut(s) 117, 162, 686
ApeKI GCWGC 4 cut(s) 25, 28, 127, 204
ApoI RAATTY 3 cut(s) 449, 641, 711
Asp718I GGTACC 1 cut(s) 50
AspLEI GCGC 1 cut(s) 768
AspS9I GGNCC 4 cut(s) 162, 308, 340, 363
AsuHPI GGTGA 4 cut(s) 535, 544, 902, 1014
AsuNHI GCTAGC 1 cut(s) 428
AvaII GGWCC 3 cut(s) 308, 340, 363
BanI GGYRCC 1 cut(s) 50
BbvCI CCTCAGC 1 cut(s) 200
BbvI GCAGC 4 cut(s) 12, 40, 114, 191
BccI CCATC 1 cut(s) 299
BceAI ACGGC 1 cut(s) 125
BcgI CGANNNNNNTGC 2 cut(s) 129, 163
BciT130I CCWGG 2 cut(s) 762, 968
BcoDI GTCTC 1 cut(s) 75
BfaI CTAG 5 cut(s) 60, 429, 441, 848, 957
BfmI CTRYAG 1 cut(s) 26
BisI GCNGC 5 cut(s) 26, 29, 128, 205, 905
BlsI GCNGC 5 cut(s) 27, 30, 129, 206, 906
BmcAI AGTACT 1 cut(s) 1039
Bme1390I CCNGG 2 cut(s) 762, 968
Bme18I GGWCC 3 cut(s) 308, 340, 363
BmgT120I GGNCC 4 cut(s) 162, 308, 340, 363
BmiI GGNNCC 2 cut(s) 52, 365
BmrFI CCNGG 2 cut(s) 762, 968
BmrI ACTGGG 2 cut(s) 666, 907
BmsI GCATC 4 cut(s) 216, 840, 891, 916
BmtI GCTAGC 1 cut(s) 432
BmuI ACTGGG 2 cut(s) 666, 907
Bpu10I CCTNAGC 1 cut(s) 200
BsaJI CCNNGG 2 cut(s) 519, 761
BsaWI WCCGGW 2 cut(s) 47, 676
Bsc4I CCNNNNNNNGG 3 cut(s) 841, 917, 1031
Bse118I RCCGGY 2 cut(s) 115, 1031
Bse1I ACTGG 5 cut(s) 402, 429, 672, 913, 1045
BseBI CCWGG 2 cut(s) 762, 968
BseDI CCNNGG 2 cut(s) 519, 761
BseGI GGATG 6 cut(s) 99, 551, 595, 692, 831, 907
BseLI CCNNNNNNNGG 3 cut(s) 841, 917, 1031
BseMII CTCAG 2 cut(s) 214, 873
BseNI ACTGG 5 cut(s) 402, 429, 672, 913, 1045
BseRI GAGGAG 2 cut(s) 230, 650
BseXI GCAGC 4 cut(s) 12, 40, 114, 191
BshFI GGCC 3 cut(s) 119, 164, 688
BshNI GGYRCC 1 cut(s) 50
BsiSI CCGG 4 cut(s) 48, 116, 677, 1032
BslFI GGGAC 1 cut(s) 349
BslI CCNNNNNNNGG 3 cut(s) 841, 917, 1031
BsmAI GTCTC 1 cut(s) 75
BsmFI GGGAC 1 cut(s) 349
BsnI GGCC 3 cut(s) 119, 164, 688
Bsp1407I TGTACA 1 cut(s) 864
Bsp143I GATC 3 cut(s) 168, 175, 263
BspACI CCGC 5 cut(s) 54, 160, 267, 632, 904
BspANI GGCC 3 cut(s) 119, 164, 688
BspCNI CTCAG 2 cut(s) 213, 874
BspLI GGNNCC 2 cut(s) 52, 365
BspMAI CTGCAG 1 cut(s) 30
BspOI GCTAGC 1 cut(s) 432
BspPI GGATC 2 cut(s) 170, 258
BspT107I GGYRCC 1 cut(s) 50
BsrFI RCCGGY 2 cut(s) 115, 1031
BsrGI TGTACA 1 cut(s) 864
BsrI ACTGG 5 cut(s) 402, 429, 672, 913, 1045
BssAI RCCGGY 2 cut(s) 115, 1031
BssECI CCNNGG 2 cut(s) 519, 761
BssMI GATC 3 cut(s) 168, 175, 263
Bst2UI CCWGG 2 cut(s) 762, 968
Bst6I CTCTTC 2 cut(s) 318, 579
BstAUI TGTACA 1 cut(s) 864
BstC8I GCNNGC 2 cut(s) 162, 430
BstDEI CTNAG 2 cut(s) 200, 882
BstF5I GGATG 6 cut(s) 99, 551, 595, 692, 831, 907
BstHHI GCGC 1 cut(s) 768
BstKTI GATC 3 cut(s) 171, 178, 266
BstMAI GTCTC 1 cut(s) 75
BstMBI GATC 3 cut(s) 168, 175, 263
BstMWI GCNNNNNNNGC 2 cut(s) 161, 502
BstNI CCWGG 2 cut(s) 762, 968
BstNSI RCATGY 1 cut(s) 876
BstSCI CCNGG 2 cut(s) 760, 966
BstSFI CTRYAG 1 cut(s) 26
BstV1I GCAGC 4 cut(s) 12, 40, 114, 191
BsuRI GGCC 3 cut(s) 119, 164, 688
BtsCI GGATG 6 cut(s) 99, 551, 595, 692, 831, 907
BtsI GCAGTG 1 cut(s) 696
BtsIMutI CAGTG 1 cut(s) 696
Cac8I GCNNGC 2 cut(s) 162, 430
CfoI GCGC 1 cut(s) 768
Cfr10I RCCGGY 2 cut(s) 115, 1031
Cfr13I GGNCC 4 cut(s) 162, 308, 340, 363
CseI GACGC 2 cut(s) 17, 76
Csp6I GTAC 6 cut(s) 51, 274, 736, 785, 865, 1038
CviAII CATG 6 cut(s) 156, 302, 486, 748, 868, 873
CviQI GTAC 6 cut(s) 51, 274, 736, 785, 865, 1038
DdeI CTNAG 2 cut(s) 200, 882
DpnI GATC 3 cut(s) 170, 177, 265
DpnII GATC 3 cut(s) 168, 175, 263
DrdI GACNNNNNNGTC 1 cut(s) 800
DseDI GACNNNNNNGTC 1 cut(s) 800
EaeI YGGCCR 1 cut(s) 117
Eam1104I CTCTTC 2 cut(s) 318, 579
EarI CTCTTC 2 cut(s) 318, 579
Eco147I AGGCCT 1 cut(s) 688
Eco47I GGWCC 3 cut(s) 308, 340, 363
Eco57I CTGAAG 2 cut(s) 809, 822
EcoRI GAATTC 1 cut(s) 711
EcoRII CCWGG 2 cut(s) 760, 966
EcoT22I ATGCAT 1 cut(s) 878
FaeI CATG 6 cut(s) 159, 305, 489, 751, 871, 876
FalI AAGNNNNNCTT 2 cut(s) 820, 852
FaqI GGGAC 1 cut(s) 349
FatI CATG 6 cut(s) 155, 301, 485, 747, 867, 872
FauI CCCGC 1 cut(s) 153
Fnu4HI GCNGC 5 cut(s) 26, 29, 128, 205, 905
FokI GGATG 6 cut(s) 86, 558, 602, 679, 818, 894
Fsp4HI GCNGC 5 cut(s) 26, 29, 128, 205, 905
FspBI CTAG 5 cut(s) 60, 429, 441, 848, 957
GlaI GCGC 1 cut(s) 767
GluI GCNGC 5 cut(s) 26, 29, 128, 205, 905
HaeIII GGCC 3 cut(s) 119, 164, 688
HapII CCGG 4 cut(s) 48, 116, 677, 1032
HgaI GACGC 2 cut(s) 17, 76
HhaI GCGC 1 cut(s) 768
Hin1II CATG 6 cut(s) 159, 305, 489, 751, 871, 876
Hin6I GCGC 1 cut(s) 766
HinP1I GCGC 1 cut(s) 766
HincII GTYRAC 1 cut(s) 556
HindII GTYRAC 1 cut(s) 556
HindIII AAGCTT 1 cut(s) 494
HinfI GANTC 5 cut(s) 68, 135, 395, 652, 801
HpaI GTTAAC 1 cut(s) 556
HpaII CCGG 4 cut(s) 48, 116, 677, 1032
HphI GGTGA 4 cut(s) 535, 544, 902, 1014
Hpy166II GTNNAC 1 cut(s) 556
Hpy188III TCNNGA 4 cut(s) 74, 609, 805, 848
Hpy8I GTNNAC 1 cut(s) 556
HpyAV CCTTC 5 cut(s) 318, 363, 495, 784, 846
HpyCH4V TGCA 7 cut(s) 18, 28, 150, 207, 568, 876, 1046
HpyF10VI GCNNNNNNNGC 2 cut(s) 161, 502
HpyF3I CTNAG 2 cut(s) 200, 882
Hsp92II CATG 6 cut(s) 159, 305, 489, 751, 871, 876
HspAI GCGC 1 cut(s) 766
KpnI GGTACC 1 cut(s) 54
KspAI GTTAAC 1 cut(s) 556
Kzo9I GATC 3 cut(s) 168, 175, 263
LmnI GCTCC 2 cut(s) 68, 135
Lsp1109I GCAGC 4 cut(s) 12, 40, 114, 191
LweI GCATC 4 cut(s) 216, 840, 891, 916
MaeI CTAG 5 cut(s) 60, 429, 441, 848, 957
MalI GATC 3 cut(s) 170, 177, 265
MboI GATC 3 cut(s) 168, 175, 263
MboII GAAGA 3 cut(s) 250, 305, 596
MluCI AATT 5 cut(s) 449, 641, 711, 721, 769
MlyI GAGTC 2 cut(s) 77, 810
MmeI TCCRAC 1 cut(s) 688
Mph1103I ATGCAT 1 cut(s) 878
MseI TTAA 5 cut(s) 555, 599, 717, 774, 1028
MspA1I CMGCKG 1 cut(s) 204
MspI CCGG 4 cut(s) 48, 116, 677, 1032
MspR9I CCNGG 2 cut(s) 762, 968
MvaI CCWGG 2 cut(s) 762, 968
MwoI GCNNNNNNNGC 2 cut(s) 161, 502
NdeII GATC 3 cut(s) 168, 175, 263
NheI GCTAGC 1 cut(s) 428
NlaIII CATG 6 cut(s) 159, 305, 489, 751, 871, 876
NlaIV GGNNCC 2 cut(s) 52, 365
NsiI ATGCAT 1 cut(s) 878
NspI RCATGY 1 cut(s) 876
PceI AGGCCT 1 cut(s) 688
PfeI GAWTC 3 cut(s) 135, 395, 652
PfoI TCCNGGA 1 cut(s) 966
PkrI GCNGC 5 cut(s) 27, 30, 129, 206, 906
PleI GAGTC 2 cut(s) 76, 809
PpsI GAGTC 2 cut(s) 76, 809
Psp6I CCWGG 2 cut(s) 760, 966
PspGI CCWGG 2 cut(s) 760, 966
PspN4I GGNNCC 2 cut(s) 52, 365
PspPI GGNCC 4 cut(s) 162, 308, 340, 363
PstI CTGCAG 1 cut(s) 30
PvuII CAGCTG 1 cut(s) 204
RsaI GTAC 6 cut(s) 52, 275, 737, 786, 866, 1039
RsaNI GTAC 6 cut(s) 51, 274, 736, 785, 865, 1038
SaqAI TTAA 5 cut(s) 555, 599, 717, 774, 1028
SatI GCNGC 5 cut(s) 26, 29, 128, 205, 905
Sau3AI GATC 3 cut(s) 168, 175, 263
Sau96I GGNCC 4 cut(s) 162, 308, 340, 363
ScaI AGTACT 1 cut(s) 1039
SchI GAGTC 2 cut(s) 77, 810
ScrFI CCNGG 2 cut(s) 762, 968
SfaNI GCATC 4 cut(s) 216, 840, 891, 916
SfcI CTRYAG 1 cut(s) 26
SinI GGWCC 3 cut(s) 308, 340, 363
Sse9I AATT 5 cut(s) 449, 641, 711, 721, 769
SseBI AGGCCT 1 cut(s) 688
SsiI CCGC 5 cut(s) 54, 160, 267, 632, 904
SspI AATATT 1 cut(s) 285
SspMI CTAG 5 cut(s) 60, 429, 441, 848, 957
StuI AGGCCT 1 cut(s) 688
StyD4I CCNGG 2 cut(s) 760, 966
TaqI TCGA 1 cut(s) 210
TasI AATT 5 cut(s) 449, 641, 711, 721, 769
TatI WGTACW 3 cut(s) 735, 864, 1037
TauI GCSGC 1 cut(s) 907
TfiI GAWTC 3 cut(s) 135, 395, 652
Tru1I TTAA 5 cut(s) 555, 599, 717, 774, 1028
Tru9I TTAA 5 cut(s) 555, 599, 717, 774, 1028
TscAI CASTG 1 cut(s) 703
TseI GCWGC 4 cut(s) 25, 28, 127, 204
TspDTI ATGAA 3 cut(s) 175, 462, 474
TspRI CASTG 1 cut(s) 703
VpaK11BI GGWCC 3 cut(s) 308, 340, 363
XapI RAATTY 3 cut(s) 449, 641, 711
XbaI TCTAGA 1 cut(s) 847
XceI RCATGY 1 cut(s) 876
XspI CTAG 5 cut(s) 60, 429, 441, 848, 957
ZrmI AGTACT 1 cut(s) 1039
Zsp2I ATGCAT 1 cut(s) 878
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.