Rh5CG305000

F-box FBD LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0000467
Physical Location & Seq
Reverse (-)
33620299 .. 33620942
644 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG305000.1

Sequence Viewer

Length: 414 bp
ATGAAGCAAAGATATATCCCGGGAATAGCATGCCTGTTGAAGAGCTCTCCCTTACTTAACACCCTCTACTTTGAATTTTACTATTTCGAAGAAAATGGTAAGTGGAATAACATTATGTTGGATAATGGCAATTGCACTCAAGAGCAATACTGGGAAACTCAGGCTCAACATTTGCTCCCCGTTCTTAGTCACCTAAAGGTGGTCGACATTGGCCTTGGTAACATGATCTCTGAGAGTGCAATCACTTTTGCAAAGTTTTTGCTTAAATATGGAAGAGGCCTGCAAAAAATGACTCTTAGCTTTTGGAGGAGCGGAAGTTCACTTTCTCCGAATTCGCTAAATGATACCATTGATTTATTAAAGGGTTTCCCCCGGGCATCTGCAGATGTTGAGTTCTCAAGATTCTGCTATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBD

Protein Analysis

137

Amino Acids

15.74

Weight (kDa)

7.69

Isoelectric Point (pI)

40.55

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000467)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g02550 FvH4_6g26921 FvH4_6g45630
malus_domestica MD01G1113200.v1.1 MD09G1101600.v1.1 MD17G1084600.v1.1
prunus_persica Prupe.3G224400_v2.0.a1 Prupe.3G224500_v2.0.a1 Prupe.3G224600_v2.0.a1
pyrus_communis pycom02g19930 pycom09g00760 pycom09g00770 pycom17g08170
rosa_chinensis RchiOBHm_Chr1g0350511 RchiOBHm_Chr2g0086171 RchiOBHm_Chr2g0117831 RchiOBHm_Chr3g0450391 RchiOBHm_Chr4g0409631 RchiOBHm_Chr5g0039731
rosa_laevigata RLG00000008538 RLG00000018375 RLG00000021415 RLG00000028481 RLG00000033926 RLG00000033937 RLG00000033938 RLG00000033939 RLG00000033941
rosa_multiflora Rmu_sc0000103.1_g000011 Rmu_sc0000330.1_g000009 Rmu_sc0000652.1_g000002 Rmu_sc0001507.1_g000017 Rmu_sc0004020.1_g000010 Rmu_sc0026676.1_g000001 Rmu_ssc0000083.1_g000022 Rmu_ssc0000400.1_g000021
rosa_roxburghii Rroxscaffold_1G00040760 Rroxscaffold_1G00041490 Rroxscaffold_1G00041500 Rroxscaffold_1G00041630 Rroxscaffold_2G00087990 Rroxscaffold_2G00126200 Rroxscaffold_4G00304800 Rroxscaffold_5G00354160 Rroxscaffold_5G00354170
rosa_rugosa Rorug01G0211500 Rorug02G0214300 Rorug02G0496800 Rorug02G0627700 Rorug04G0095600 Rorug05G0181700
rosa_samantha Rh1AG226300 Rh1BG194700 Rh1CG211100 Rh1DG222900 Rh2AG270500 Rh2AG270600 Rh2AG562900 Rh2AG563000 Rh2BG281900 Rh2BG282000 Rh2BG575700 Rh2CG269300 Rh2CG269400 Rh2DG278300 Rh2DG296200 Rh2DG585900 Rh3AG028000 Rh3AG028100 Rh3BG028500 Rh3BG028600 Rh3CG027300 Rh3CG027400 Rh3DG028400 Rh3DG028500 Rh4BG156800 Rh4CG167300 Rh4CG167400 Rh4DG151100 Rh5AG268000 Rh5BG272400 Rh5BG272500 Rh5CG304000 Rh5CG305000 Rh5CG305100 Rh5DG280500
rosa_wichuraiana Rw1G019530 Rw2G021370 Rw4G012860 Rw4G012970 Rw5G025070

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 312
AccI GTMKAC 1 cut(s) 204
AciI CCGC 1 cut(s) 312
AcsI RAATTY 2 cut(s) 74, 331
AfiI CCNNNNNNNGG 1 cut(s) 199
AgsI TTSAA 2 cut(s) 40, 74
AloI GAACNNNNNNTCC 2 cut(s) 301, 333
AluBI AGCT 2 cut(s) 45, 300
AluI AGCT 2 cut(s) 45, 300
Alw21I GWGCWC 1 cut(s) 47
Ama87I CYCGRG 2 cut(s) 19, 372
AoxI GGCC 2 cut(s) 211, 277
ApoI RAATTY 2 cut(s) 74, 331
AsuC2I CCSGG 4 cut(s) 20, 21, 373, 374
AsuHPI GGTGA 1 cut(s) 182
AsuII TTCGAA 1 cut(s) 87
AvaI CYCGRG 2 cut(s) 19, 372
BanII GRGCYC 1 cut(s) 47
Bbv12I GWGCWC 1 cut(s) 47
BcnI CCSGG 4 cut(s) 20, 21, 373, 374
BfmI CTRYAG 1 cut(s) 381
Bme1390I CCNGG 4 cut(s) 20, 21, 373, 374
BmeT110I CYCGRG 2 cut(s) 19, 372
BmrFI CCNGG 4 cut(s) 20, 21, 373, 374
BmrI ACTGGG 1 cut(s) 160
BmsI GCATC 1 cut(s) 386
BmuI ACTGGG 1 cut(s) 160
Bpu14I TTCGAA 1 cut(s) 87
BpuEI CTTGAG 2 cut(s) 123, 382
BpuMI CCSGG 4 cut(s) 20, 21, 373, 374
BsaJI CCNNGG 4 cut(s) 19, 214, 371, 372
BsaXI ACNNNNNCTCC 4 cut(s) 159, 189, 301, 331
Bsc4I CCNNNNNNNGG 1 cut(s) 199
Bse1I ACTGG 1 cut(s) 155
BseDI CCNNGG 4 cut(s) 19, 214, 371, 372
BseLI CCNNNNNNNGG 1 cut(s) 199
BseMII CTCAG 2 cut(s) 173, 222
BseNI ACTGG 1 cut(s) 155
BseRI GAGGAG 1 cut(s) 322
BshFI GGCC 2 cut(s) 213, 279
BsiHKAI GWGCWC 1 cut(s) 47
BsiHKCI CYCGRG 2 cut(s) 19, 372
BsiSI CCGG 2 cut(s) 20, 373
BslI CCNNNNNNNGG 1 cut(s) 199
BsnI GGCC 2 cut(s) 213, 279
BsoBI CYCGRG 2 cut(s) 19, 372
Bsp119I TTCGAA 1 cut(s) 87
Bsp1286I GDGCHC 1 cut(s) 47
Bsp143I GATC 1 cut(s) 225
BspACI CCGC 1 cut(s) 312
BspANI GGCC 2 cut(s) 213, 279
BspCNI CTCAG 2 cut(s) 172, 223
BspMAI CTGCAG 1 cut(s) 385
BspQI GCTCTTC 1 cut(s) 35
BspT104I TTCGAA 1 cut(s) 87
BsrBI CCGCTC 1 cut(s) 312
BsrI ACTGG 1 cut(s) 155
BssECI CCNNGG 4 cut(s) 19, 214, 371, 372
BssMI GATC 1 cut(s) 225
BssT1I CCWWGG 1 cut(s) 214
Bst6I CTCTTC 2 cut(s) 35, 268
BstBI TTCGAA 1 cut(s) 87
BstC8I GCNNGC 2 cut(s) 31, 281
BstDEI CTNAG 4 cut(s) 159, 185, 231, 296
BstKTI GATC 1 cut(s) 228
BstMBI GATC 1 cut(s) 225
BstNSI RCATGY 1 cut(s) 33
BstSCI CCNGG 4 cut(s) 18, 19, 371, 372
BstSFI CTRYAG 1 cut(s) 381
BsuRI GGCC 2 cut(s) 213, 279
Cac8I GCNNGC 2 cut(s) 31, 281
Cfr9I CCCGGG 2 cut(s) 19, 372
CviAII CATG 2 cut(s) 30, 223
CviJI RGCY 5 cut(s) 45, 164, 213, 279, 300
CviKI_1 RGCY 5 cut(s) 45, 164, 213, 279, 300
DdeI CTNAG 4 cut(s) 159, 185, 231, 296
DpnI GATC 1 cut(s) 227
DpnII GATC 1 cut(s) 225
Eam1104I CTCTTC 2 cut(s) 35, 268
EarI CTCTTC 2 cut(s) 35, 268
Ecl136II GAGCTC 1 cut(s) 45
Eco130I CCWWGG 1 cut(s) 214
Eco147I AGGCCT 1 cut(s) 279
Eco24I GRGCYC 1 cut(s) 47
Eco53kI GAGCTC 1 cut(s) 45
Eco88I CYCGRG 2 cut(s) 19, 372
EcoICRI GAGCTC 1 cut(s) 45
EcoRI GAATTC 1 cut(s) 331
EcoT14I CCWWGG 1 cut(s) 214
EcoT38I GRGCYC 1 cut(s) 47
ErhI CCWWGG 1 cut(s) 214
FaeI CATG 2 cut(s) 33, 226
FaiI YATR 5 cut(s) 15, 31, 116, 224, 270
FatI CATG 2 cut(s) 29, 222
FblI GTMKAC 1 cut(s) 204
FriOI GRGCYC 1 cut(s) 47
HaeIII GGCC 2 cut(s) 213, 279
HapII CCGG 2 cut(s) 20, 373
Hin1II CATG 2 cut(s) 33, 226
HincII GTYRAC 1 cut(s) 205
HindII GTYRAC 1 cut(s) 205
HinfI GANTC 2 cut(s) 292, 402
HpaII CCGG 2 cut(s) 20, 373
HphI GGTGA 1 cut(s) 182
Hpy166II GTNNAC 2 cut(s) 205, 320
Hpy188I TCNGA 2 cut(s) 232, 330
Hpy188III TCNNGA 2 cut(s) 140, 399
Hpy8I GTNNAC 2 cut(s) 205, 320
HpyCH4V TGCA 5 cut(s) 135, 239, 251, 283, 383
HpyF3I CTNAG 4 cut(s) 159, 185, 231, 296
Hsp92II CATG 2 cut(s) 33, 226
Kzo9I GATC 1 cut(s) 225
LguI GCTCTTC 1 cut(s) 35
LmnI GCTCC 2 cut(s) 180, 309
LpnPI CCDG 6 cut(s) 33, 47, 136, 146, 293, 386
LweI GCATC 1 cut(s) 386
MaeIII GTNAC 2 cut(s) 188, 218
MalI GATC 1 cut(s) 227
MbiI CCGCTC 1 cut(s) 312
MboI GATC 1 cut(s) 225
MboII GAAGA 3 cut(s) 52, 101, 285
MfeI CAATTG 1 cut(s) 130
MhlI GDGCHC 1 cut(s) 47
MluCI AATT 3 cut(s) 74, 130, 331
MlyI GAGTC 1 cut(s) 286
MmeI TCCRAC 1 cut(s) 99
MnlI CCTC 3 cut(s) 74, 269, 300
MseI TTAA 3 cut(s) 57, 264, 359
MspI CCGG 2 cut(s) 20, 373
MspR9I CCNGG 4 cut(s) 20, 21, 373, 374
MunI CAATTG 1 cut(s) 130
NciI CCSGG 4 cut(s) 20, 21, 373, 374
NdeII GATC 1 cut(s) 225
NlaIII CATG 2 cut(s) 33, 226
NmuCI GTSAC 1 cut(s) 188
NspI RCATGY 1 cut(s) 33
NspV TTCGAA 1 cut(s) 87
PaeI GCATGC 1 cut(s) 33
PceI AGGCCT 1 cut(s) 279
PciSI GCTCTTC 1 cut(s) 35
PfeI GAWTC 1 cut(s) 402
PleI GAGTC 1 cut(s) 286
PpsI GAGTC 1 cut(s) 286
Psp124BI GAGCTC 1 cut(s) 47
PstI CTGCAG 1 cut(s) 385
SacI GAGCTC 1 cut(s) 47
SalI GTCGAC 1 cut(s) 203
SapI GCTCTTC 1 cut(s) 35
SaqAI TTAA 3 cut(s) 57, 264, 359
Sau3AI GATC 1 cut(s) 225
SchI GAGTC 1 cut(s) 286
ScrFI CCNGG 4 cut(s) 20, 21, 373, 374
SduI GDGCHC 1 cut(s) 47
SetI ASST 4 cut(s) 47, 195, 201, 302
SfaNI GCATC 1 cut(s) 386
SfcI CTRYAG 1 cut(s) 381
SfuI TTCGAA 1 cut(s) 87
SmaI CCCGGG 2 cut(s) 21, 374
SmlI CTYRAG 2 cut(s) 138, 397
SmoI CTYRAG 2 cut(s) 138, 397
SphI GCATGC 1 cut(s) 33
Sse9I AATT 3 cut(s) 74, 130, 331
SseBI AGGCCT 1 cut(s) 279
SsiI CCGC 1 cut(s) 312
SstI GAGCTC 1 cut(s) 47
StuI AGGCCT 1 cut(s) 279
StyD4I CCNGG 4 cut(s) 18, 19, 371, 372
StyI CCWWGG 1 cut(s) 214
TaqI TCGA 2 cut(s) 87, 204
TasI AATT 3 cut(s) 74, 130, 331
TfiI GAWTC 1 cut(s) 402
Tru1I TTAA 3 cut(s) 57, 264, 359
Tru9I TTAA 3 cut(s) 57, 264, 359
TseFI GTSAC 1 cut(s) 188
Tsp45I GTSAC 1 cut(s) 188
TspDTI ATGAA 1 cut(s) 17
TspMI CCCGGG 2 cut(s) 19, 372
XapI RAATTY 2 cut(s) 74, 331
XceI RCATGY 1 cut(s) 33
XmaI CCCGGG 2 cut(s) 19, 372
XmiI GTMKAC 1 cut(s) 204
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.