MD09G1101600.v1.1

F-box FBD LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr09
OG0000467
Physical Location & Seq
Reverse (-)
7452686 .. 7453807
1122 bp
Loading structure...
UTR
Exon/CDS
Intron
MD09G1101600.v1.1.491

Sequence Viewer

Length: 1122 bp
ATGACTGAGGCAAGGGACAGAATCAGCGATCTTCCTGATGAAATCTTACATGAGATTTTCTCCTTGGTGCCCGTCAAATCTGTTGCAAAAAACAGTGCTTTATCAAGAACATGGAGCCGTCTTTGGGCTACCTTACCTGTTCTCGACTTCAACCAGGTTTGTCCTCCAATGCCGAAAAGATTAGATCATGCAAACGAACTGCAGGTAGTTCTTGATGAGCAAATGGAAGCTTTGGCATTCATTCCCAGAGTATTGTTTAGCCGCCCCGAAAATTCTAACATCAATGTTTTTCGATTTTCGGGTCGGCTAATGAGTTTGTCTTGCTTAGAAGATTGCATTTGTAGAGTGGTGAATCATAGGGTTGGAGAACTCCAACTCAATCTCTTGATGGCTTGCGGCGAAAGGTTTGATTTGCCTCATTGTGTGTATGAGTGTGATTCCTTGCGGAGCCTCACGTTAATTAACGCCACTCGCATACGGCTTCGATCTCAGCCAGAAGATTCAAAGCCTAGGTTTTGTTTTTCGTTTTCCCTTGTTAAGGCTACGAGTGGCCTTTGCTCCCTTCAAGCCTTGACTCTCAAGTGTGTGGATATCTTGGATGATCATTTGACTACGGATTTATTTTCAGATTCTTCGTTTCCATTCCTTCAAAACTTGATTATGAAAACTTGTCAAGGAATGACGCATCTTAAAATCAGTTGTTCGAAGCTCAAAGATGTGCGAGTTGTTGATATGAACTTAAATAGCTTGGACATCTCTGGAAGTAGACTTGAGAATCTGACGGTTAGATTTTGTTTCGAAAATCCCAGCGGCGACAATAAAAGTAGGGTAAACATCTTTGCCCCCAATCTAAAAGTCTTCCGTTGGCAATTTAATGGCTATACTGATGATTGTTCAATCCAGAACTTCCCTAGACTGAATGCATTTTATATGCATTATTGGTTAGAAGATGATGTTAGCAATGTGATTATTAAAAACGTGGTCAAACTTCTCTCAGCATCATCCCAAATTTCAGTCCTTGATATTCAATCCTTCGGCCTTCTTCTGGTTAGTTTACTTTTCTTTTTCCCATCTGACTTTACTTGTTTTGAGAAAACTATGGTGACGAGCTTAAGTTGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBD

Protein Analysis

374

Amino Acids

42.53

Weight (kDa)

6.19

Isoelectric Point (pI)

48.51

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 8 - 47 8.9e-07 F-box domain
LRR_At5g56370 PF24758 118 - 287 1.3e-06 FBD-associated F-box protein At5g56370, LRR repeats
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000467)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g02550 FvH4_6g26921 FvH4_6g45630
malus_domestica MD01G1113200.v1.1 MD09G1101600.v1.1 MD17G1084600.v1.1
prunus_persica Prupe.3G224400_v2.0.a1 Prupe.3G224500_v2.0.a1 Prupe.3G224600_v2.0.a1
pyrus_communis pycom02g19930 pycom09g00760 pycom09g00770 pycom17g08170
rosa_chinensis RchiOBHm_Chr1g0350511 RchiOBHm_Chr2g0086171 RchiOBHm_Chr2g0117831 RchiOBHm_Chr3g0450391 RchiOBHm_Chr4g0409631 RchiOBHm_Chr5g0039731
rosa_laevigata RLG00000008538 RLG00000018375 RLG00000021415 RLG00000028481 RLG00000033926 RLG00000033937 RLG00000033938 RLG00000033939 RLG00000033941
rosa_multiflora Rmu_sc0000103.1_g000011 Rmu_sc0000330.1_g000009 Rmu_sc0000652.1_g000002 Rmu_sc0001507.1_g000017 Rmu_sc0004020.1_g000010 Rmu_sc0026676.1_g000001 Rmu_ssc0000083.1_g000022 Rmu_ssc0000400.1_g000021
rosa_roxburghii Rroxscaffold_1G00040760 Rroxscaffold_1G00041490 Rroxscaffold_1G00041500 Rroxscaffold_1G00041630 Rroxscaffold_2G00087990 Rroxscaffold_2G00126200 Rroxscaffold_4G00304800 Rroxscaffold_5G00354160 Rroxscaffold_5G00354170
rosa_rugosa Rorug01G0211500 Rorug02G0214300 Rorug02G0496800 Rorug02G0627700 Rorug04G0095600 Rorug05G0181700
rosa_samantha Rh1AG226300 Rh1BG194700 Rh1CG211100 Rh1DG222900 Rh2AG270500 Rh2AG270600 Rh2AG562900 Rh2AG563000 Rh2BG281900 Rh2BG282000 Rh2BG575700 Rh2CG269300 Rh2CG269400 Rh2DG278300 Rh2DG296200 Rh2DG585900 Rh3AG028000 Rh3AG028100 Rh3BG028500 Rh3BG028600 Rh3CG027300 Rh3CG027400 Rh3DG028400 Rh3DG028500 Rh4BG156800 Rh4CG167300 Rh4CG167400 Rh4DG151100 Rh5AG268000 Rh5BG272400 Rh5BG272500 Rh5CG304000 Rh5CG305000 Rh5CG305100 Rh5DG280500
rosa_wichuraiana Rw1G019530 Rw2G021370 Rw4G012860 Rw4G012970 Rw5G025070

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 193
AccB1I GGYRCC 1 cut(s) 67
AccI GTMKAC 1 cut(s) 766
AciI CCGC 4 cut(s) 262, 396, 445, 810
AcsI RAATTY 2 cut(s) 271, 1008
AfiI CCNNNNNNNGG 3 cut(s) 124, 538, 1045
AflII CTTAAG 1 cut(s) 1111
AgsI TTSAA 6 cut(s) 151, 504, 566, 650, 897, 1028
AjnI CCWGG 1 cut(s) 153
AluBI AGCT 4 cut(s) 230, 709, 747, 1110
AluI AGCT 4 cut(s) 230, 709, 747, 1110
AoxI GGCC 2 cut(s) 550, 1036
ApoI RAATTY 2 cut(s) 271, 1008
AspA2I CCTAGG 1 cut(s) 509
AsuHPI GGTGA 2 cut(s) 361, 1114
AsuII TTCGAA 2 cut(s) 704, 798
AvrII CCTAGG 1 cut(s) 509
BaeGI GKGCMC 1 cut(s) 72
BanI GGYRCC 1 cut(s) 67
BbsI GAAGAC 1 cut(s) 850
BccI CCATC 2 cut(s) 382, 1078
BceAI ACGGC 2 cut(s) 102, 494
BciT130I CCWGG 1 cut(s) 155
BclI TGATCA 1 cut(s) 601
BfaI CTAG 3 cut(s) 510, 912, 1120
BfmI CTRYAG 1 cut(s) 200
BfrI CTTAAG 1 cut(s) 1111
BfuAI ACCTGC 1 cut(s) 193
BisI GCNGC 3 cut(s) 262, 397, 811
BlnI CCTAGG 1 cut(s) 509
BlsI GCNGC 3 cut(s) 263, 398, 812
Bme1390I CCNGG 1 cut(s) 155
BmiI GGNNCC 3 cut(s) 69, 116, 449
BmrFI CCNGG 1 cut(s) 155
BmsI GCATC 2 cut(s) 694, 1007
BpiI GAAGAC 1 cut(s) 850
BplI GAGNNNNNCTC 2 cut(s) 44, 76
Bpu14I TTCGAA 2 cut(s) 704, 798
BpuEI CTTGAG 2 cut(s) 563, 791
BsaJI CCNNGG 2 cut(s) 63, 509
Bsc4I CCNNNNNNNGG 3 cut(s) 124, 538, 1045
Bse3DI GCAATG 1 cut(s) 967
BseBI CCWGG 1 cut(s) 155
BseDI CCNNGG 2 cut(s) 63, 509
BseGI GGATG 2 cut(s) 604, 1001
BseLI CCNNNNNNNGG 3 cut(s) 124, 538, 1045
BseMI GCAATG 1 cut(s) 967
BseMII CTCAG 2 cut(s) 503, 1008
BseSI GKGCMC 1 cut(s) 72
BseYI CCCAGC 1 cut(s) 806
BshFI GGCC 2 cut(s) 552, 1038
BshNI GGYRCC 1 cut(s) 67
BslFI GGGAC 1 cut(s) 29
BslI CCNNNNNNNGG 3 cut(s) 124, 538, 1045
BsmFI GGGAC 1 cut(s) 29
BsmI GAATGC 2 cut(s) 236, 925
BsnI GGCC 2 cut(s) 552, 1038
Bsp119I TTCGAA 2 cut(s) 704, 798
Bsp1286I GDGCHC 1 cut(s) 72
Bsp143I GATC 4 cut(s) 28, 184, 485, 601
BspACI CCGC 4 cut(s) 262, 396, 445, 810
BspANI GGCC 2 cut(s) 552, 1038
BspCNI CTCAG 2 cut(s) 502, 1007
BspLI GGNNCC 3 cut(s) 69, 116, 449
BspMAI CTGCAG 1 cut(s) 204
BspMI ACCTGC 1 cut(s) 193
BspT104I TTCGAA 2 cut(s) 704, 798
BspT107I GGYRCC 1 cut(s) 67
BspTI CTTAAG 1 cut(s) 1111
BsrDI GCAATG 1 cut(s) 967
BssECI CCNNGG 2 cut(s) 63, 509
BssMI GATC 4 cut(s) 28, 184, 485, 601
BssT1I CCWWGG 2 cut(s) 63, 509
Bst2UI CCWGG 1 cut(s) 155
Bst4CI ACNGT 2 cut(s) 95, 784
BstAFI CTTAAG 1 cut(s) 1111
BstBI TTCGAA 2 cut(s) 704, 798
BstC8I GCNNGC 1 cut(s) 394
BstDEI CTNAG 4 cut(s) 6, 325, 489, 994
BstENI CCTNNNNNAGG 1 cut(s) 536
BstF5I GGATG 2 cut(s) 604, 1001
BstKTI GATC 4 cut(s) 31, 187, 488, 604
BstMBI GATC 4 cut(s) 28, 184, 485, 601
BstMWI GCNNNNNNNGC 1 cut(s) 1116
BstNI CCWGG 1 cut(s) 155
BstSCI CCNGG 1 cut(s) 153
BstSFI CTRYAG 1 cut(s) 200
BstSLI GKGCMC 1 cut(s) 72
BstV2I GAAGAC 1 cut(s) 850
BsuRI GGCC 2 cut(s) 552, 1038
BtsCI GGATG 2 cut(s) 604, 1001
BtsIMutI CAGTG 1 cut(s) 100
BveI ACCTGC 1 cut(s) 193
Cac8I GCNNGC 1 cut(s) 394
CseI GACGC 1 cut(s) 691
CsiI ACCWGGT 1 cut(s) 153
CviAII CATG 3 cut(s) 50, 111, 188
DdeI CTNAG 4 cut(s) 6, 325, 489, 994
DpnI GATC 4 cut(s) 30, 186, 487, 603
DpnII GATC 4 cut(s) 28, 184, 485, 601
Eco130I CCWWGG 2 cut(s) 63, 509
Eco32I GATATC 1 cut(s) 592
EcoNI CCTNNNNNAGG 1 cut(s) 536
EcoRII CCWGG 1 cut(s) 153
EcoRV GATATC 1 cut(s) 592
EcoT14I CCWWGG 2 cut(s) 63, 509
EcoT22I ATGCAT 2 cut(s) 925, 936
ErhI CCWWGG 2 cut(s) 63, 509
FaeI CATG 3 cut(s) 53, 114, 191
FaqI GGGAC 1 cut(s) 29
FatI CATG 3 cut(s) 49, 110, 187
FbaI TGATCA 1 cut(s) 601
FblI GTMKAC 1 cut(s) 766
Fnu4HI GCNGC 3 cut(s) 262, 397, 811
FokI GGATG 2 cut(s) 611, 988
Fsp4HI GCNGC 3 cut(s) 262, 397, 811
FspBI CTAG 3 cut(s) 510, 912, 1120
GluI GCNGC 3 cut(s) 262, 397, 811
GsaI CCCAGC 1 cut(s) 810
HaeIII GGCC 2 cut(s) 552, 1038
HgaI GACGC 1 cut(s) 691
Hin1II CATG 3 cut(s) 53, 114, 191
HindIII AAGCTT 1 cut(s) 228
HinfI GANTC 7 cut(s) 21, 352, 437, 500, 574, 629, 775
HphI GGTGA 2 cut(s) 361, 1114
Hpy166II GTNNAC 3 cut(s) 767, 832, 1055
Hpy188I TCNGA 3 cut(s) 628, 780, 1075
Hpy188III TCNNGA 7 cut(s) 35, 105, 143, 212, 385, 759, 901
Hpy8I GTNNAC 3 cut(s) 767, 832, 1055
HpyAV CCTTC 4 cut(s) 572, 656, 1042, 1049
HpyCH4III ACNGT 2 cut(s) 95, 784
HpyCH4IV ACGT 2 cut(s) 455, 978
HpyCH4V TGCA 6 cut(s) 86, 191, 202, 336, 923, 934
HpyF10VI GCNNNNNNNGC 1 cut(s) 1116
HpyF3I CTNAG 4 cut(s) 6, 325, 489, 994
HpySE526I ACGT 2 cut(s) 455, 978
Hsp92II CATG 3 cut(s) 53, 114, 191
Ksp22I TGATCA 1 cut(s) 601
Kzo9I GATC 4 cut(s) 28, 184, 485, 601
LmnI GCTCC 3 cut(s) 114, 447, 563
LweI GCATC 2 cut(s) 694, 1007
MabI ACCWGGT 1 cut(s) 153
MaeI CTAG 3 cut(s) 510, 912, 1120
MaeII ACGT 2 cut(s) 455, 978
MaeIII GTNAC 1 cut(s) 1102
MalI GATC 4 cut(s) 30, 186, 487, 603
MboI GATC 4 cut(s) 28, 184, 485, 601
MboII GAAGA 7 cut(s) 23, 341, 509, 624, 850, 959, 1034
MhlI GDGCHC 1 cut(s) 72
MluCI AATT 4 cut(s) 271, 459, 869, 1008
MlyI GAGTC 1 cut(s) 568
MmeI TCCRAC 2 cut(s) 343, 397
MnlI CCTC 3 cut(s) 174, 426, 461
Mph1103I ATGCAT 2 cut(s) 925, 936
MseI TTAA 8 cut(s) 458, 462, 537, 690, 740, 873, 972, 1112
MspA1I CMGCKG 1 cut(s) 810
MspCI CTTAAG 1 cut(s) 1111
MspR9I CCNGG 1 cut(s) 155
Mva1269I GAATGC 2 cut(s) 236, 925
MvaI CCWGG 1 cut(s) 155
MwoI GCNNNNNNNGC 1 cut(s) 1116
NdeII GATC 4 cut(s) 28, 184, 485, 601
NlaIII CATG 3 cut(s) 53, 114, 191
NlaIV GGNNCC 3 cut(s) 69, 116, 449
NmuCI GTSAC 1 cut(s) 1102
NsiI ATGCAT 2 cut(s) 925, 936
NspV TTCGAA 2 cut(s) 704, 798
PacI TTAATTAA 1 cut(s) 462
PctI GAATGC 2 cut(s) 236, 925
PfeI GAWTC 6 cut(s) 21, 352, 437, 500, 629, 775
PkrI GCNGC 3 cut(s) 263, 398, 812
PleI GAGTC 1 cut(s) 568
PpsI GAGTC 1 cut(s) 568
Psp6I CCWGG 1 cut(s) 153
PspFI CCCAGC 1 cut(s) 806
PspGI CCWGG 1 cut(s) 153
PspN4I GGNNCC 3 cut(s) 69, 116, 449
PstI CTGCAG 1 cut(s) 204
SaqAI TTAA 8 cut(s) 458, 462, 537, 690, 740, 873, 972, 1112
SatI GCNGC 3 cut(s) 262, 397, 811
Sau3AI GATC 4 cut(s) 28, 184, 485, 601
SchI GAGTC 1 cut(s) 568
ScrFI CCNGG 1 cut(s) 155
SduI GDGCHC 1 cut(s) 72
SexAI ACCWGGT 1 cut(s) 153
SfaNI GCATC 2 cut(s) 694, 1007
SfcI CTRYAG 1 cut(s) 200
SfuI TTCGAA 2 cut(s) 704, 798
SmlI CTYRAG 3 cut(s) 578, 770, 1111
SmoI CTYRAG 3 cut(s) 578, 770, 1111
Sse9I AATT 4 cut(s) 271, 459, 869, 1008
SsiI CCGC 4 cut(s) 262, 396, 445, 810
SspMI CTAG 3 cut(s) 510, 912, 1120
StyD4I CCNGG 1 cut(s) 153
StyI CCWWGG 2 cut(s) 63, 509
TaaI ACNGT 2 cut(s) 95, 784
TaiI ACGT 2 cut(s) 458, 981
TaqI TCGA 5 cut(s) 144, 292, 484, 704, 798
TasI AATT 4 cut(s) 271, 459, 869, 1008
TauI GCSGC 3 cut(s) 264, 399, 813
TfiI GAWTC 6 cut(s) 21, 352, 437, 500, 629, 775
Tru1I TTAA 8 cut(s) 458, 462, 537, 690, 740, 873, 972, 1112
Tru9I TTAA 8 cut(s) 458, 462, 537, 690, 740, 873, 972, 1112
TscAI CASTG 1 cut(s) 100
TseFI GTSAC 1 cut(s) 1102
Tsp45I GTSAC 1 cut(s) 1102
TspDTI ATGAA 4 cut(s) 54, 229, 677, 749
TspGWI ACGGA 2 cut(s) 629, 851
TspRI CASTG 1 cut(s) 100
Vha464I CTTAAG 1 cut(s) 1111
XagI CCTNNNNNAGG 1 cut(s) 536
XapI RAATTY 2 cut(s) 271, 1008
XmaJI CCTAGG 1 cut(s) 509
XmiI GTMKAC 1 cut(s) 766
XspI CTAG 3 cut(s) 510, 912, 1120
Zsp2I ATGCAT 2 cut(s) 925, 936
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.