Rh2CG269300

F-box FBD LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0000467
Physical Location & Seq
Reverse (-)
29204360 .. 29204656
297 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG269300.1

Sequence Viewer

Length: 297 bp
ATGGATGATGCCAATTGCAGCCAAGAACAATACTGGGAGACTCAGGGTCAATATTTGAGCCCCTCTCTTAGTCACCTAAAGGTGGTCAGAATTCGCCTTGGTGAAATGATCCCCGAGAGTGCAATCAAATTTGCAAAGTTTGTGCTCAAATATGGAAGAAACCTGCAAAAAATGAGTGTTAGCTTTGATATGAACAAAAGTTGTCTACCTCCCAATTCGCTGAGTGATACCATTGCTTTAATAAAGAGTTTCCGCCGGGCATCTCCATATATCAAATTCTCAACTCATTGCTATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBD

Protein Analysis

98

Amino Acids

11.29

Weight (kDa)

9.27

Isoelectric Point (pI)

49.28

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000467)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g02550 FvH4_6g26921 FvH4_6g45630
malus_domestica MD01G1113200.v1.1 MD09G1101600.v1.1 MD17G1084600.v1.1
prunus_persica Prupe.3G224400_v2.0.a1 Prupe.3G224500_v2.0.a1 Prupe.3G224600_v2.0.a1
pyrus_communis pycom02g19930 pycom09g00760 pycom09g00770 pycom17g08170
rosa_chinensis RchiOBHm_Chr1g0350511 RchiOBHm_Chr2g0086171 RchiOBHm_Chr2g0117831 RchiOBHm_Chr3g0450391 RchiOBHm_Chr4g0409631 RchiOBHm_Chr5g0039731
rosa_laevigata RLG00000008538 RLG00000018375 RLG00000021415 RLG00000028481 RLG00000033926 RLG00000033937 RLG00000033938 RLG00000033939 RLG00000033941
rosa_multiflora Rmu_sc0000103.1_g000011 Rmu_sc0000330.1_g000009 Rmu_sc0000652.1_g000002 Rmu_sc0001507.1_g000017 Rmu_sc0004020.1_g000010 Rmu_sc0026676.1_g000001 Rmu_ssc0000083.1_g000022 Rmu_ssc0000400.1_g000021
rosa_roxburghii Rroxscaffold_1G00040760 Rroxscaffold_1G00041490 Rroxscaffold_1G00041500 Rroxscaffold_1G00041630 Rroxscaffold_2G00087990 Rroxscaffold_2G00126200 Rroxscaffold_4G00304800 Rroxscaffold_5G00354160 Rroxscaffold_5G00354170
rosa_rugosa Rorug01G0211500 Rorug02G0214300 Rorug02G0496800 Rorug02G0627700 Rorug04G0095600 Rorug05G0181700
rosa_samantha Rh1AG226300 Rh1BG194700 Rh1CG211100 Rh1DG222900 Rh2AG270500 Rh2AG270600 Rh2AG562900 Rh2AG563000 Rh2BG281900 Rh2BG282000 Rh2BG575700 Rh2CG269300 Rh2CG269400 Rh2DG278300 Rh2DG296200 Rh2DG585900 Rh3AG028000 Rh3AG028100 Rh3BG028500 Rh3BG028600 Rh3CG027300 Rh3CG027400 Rh3DG028400 Rh3DG028500 Rh4BG156800 Rh4CG167300 Rh4CG167400 Rh4DG151100 Rh5AG268000 Rh5BG272400 Rh5BG272500 Rh5CG304000 Rh5CG305000 Rh5CG305100 Rh5DG280500
rosa_wichuraiana Rw1G019530 Rw2G021370 Rw4G012860 Rw4G012970 Rw5G025070

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 171
AccI GTMKAC 1 cut(s) 205
AciI CCGC 1 cut(s) 253
AclWI GGATC 1 cut(s) 103
AcsI RAATTY 3 cut(s) 90, 128, 275
AfiI CCNNNNNNNGG 1 cut(s) 82
AhdI GACNNNNNGTC 1 cut(s) 45
AluBI AGCT 1 cut(s) 183
AluI AGCT 1 cut(s) 183
Alw21I GWGCWC 1 cut(s) 147
Alw26I GTCTC 1 cut(s) 32
AlwI GGATC 1 cut(s) 103
Ama87I CYCGRG 1 cut(s) 113
ApeKI GCWGC 1 cut(s) 18
ApoI RAATTY 3 cut(s) 90, 128, 275
AsuC2I CCSGG 1 cut(s) 257
AsuHPI GGTGA 2 cut(s) 65, 113
AvaI CYCGRG 1 cut(s) 113
BanII GRGCYC 1 cut(s) 62
Bbv12I GWGCWC 1 cut(s) 147
BbvI GCAGC 1 cut(s) 30
BcnI CCSGG 1 cut(s) 257
BcoDI GTCTC 1 cut(s) 32
BfuAI ACCTGC 1 cut(s) 171
BisI GCNGC 1 cut(s) 19
BlsI GCNGC 1 cut(s) 20
Bme1390I CCNGG 1 cut(s) 257
BmeRI GACNNNNNGTC 1 cut(s) 45
BmeT110I CYCGRG 1 cut(s) 113
BmrFI CCNGG 1 cut(s) 257
BmrI ACTGGG 1 cut(s) 43
BmsI GCATC 1 cut(s) 269
BmuI ACTGGG 1 cut(s) 43
BplI GAGNNNNNCTC 2 cut(s) 49, 81
BpuMI CCSGG 1 cut(s) 257
BsaJI CCNNGG 1 cut(s) 97
Bsc4I CCNNNNNNNGG 1 cut(s) 82
Bse1I ACTGG 1 cut(s) 38
Bse3DI GCAATG 2 cut(s) 231, 286
BseDI CCNNGG 1 cut(s) 97
BseGI GGATG 1 cut(s) 10
BseLI CCNNNNNNNGG 1 cut(s) 82
BseMI GCAATG 2 cut(s) 231, 286
BseMII CTCAG 2 cut(s) 56, 212
BseNI ACTGG 1 cut(s) 38
BseXI GCAGC 1 cut(s) 30
BsiHKAI GWGCWC 1 cut(s) 147
BsiHKCI CYCGRG 1 cut(s) 113
BsiSI CCGG 1 cut(s) 256
BslI CCNNNNNNNGG 1 cut(s) 82
BsmAI GTCTC 1 cut(s) 32
BsoBI CYCGRG 1 cut(s) 113
Bsp1286I GDGCHC 2 cut(s) 62, 147
Bsp143I GATC 1 cut(s) 108
BspACI CCGC 1 cut(s) 253
BspCNI CTCAG 2 cut(s) 55, 213
BspMI ACCTGC 1 cut(s) 171
BspPI GGATC 1 cut(s) 103
BsrDI GCAATG 2 cut(s) 231, 286
BsrI ACTGG 1 cut(s) 38
BssECI CCNNGG 1 cut(s) 97
BssMI GATC 1 cut(s) 108
BssT1I CCWWGG 1 cut(s) 97
BstDEI CTNAG 3 cut(s) 42, 68, 221
BstF5I GGATG 1 cut(s) 10
BstKTI GATC 1 cut(s) 111
BstMAI GTCTC 1 cut(s) 32
BstMBI GATC 1 cut(s) 108
BstSCI CCNGG 1 cut(s) 255
BstV1I GCAGC 1 cut(s) 30
BtsCI GGATG 1 cut(s) 10
BveI ACCTGC 1 cut(s) 171
CviJI RGCY 3 cut(s) 21, 60, 183
CviKI_1 RGCY 3 cut(s) 21, 60, 183
DdeI CTNAG 3 cut(s) 42, 68, 221
DpnI GATC 1 cut(s) 110
DpnII GATC 1 cut(s) 108
DriI GACNNNNNGTC 1 cut(s) 45
Eam1105I GACNNNNNGTC 1 cut(s) 45
EciI GGCGGA 1 cut(s) 242
Eco130I CCWWGG 1 cut(s) 97
Eco24I GRGCYC 1 cut(s) 62
Eco88I CYCGRG 1 cut(s) 113
EcoRI GAATTC 1 cut(s) 90
EcoT14I CCWWGG 1 cut(s) 97
EcoT38I GRGCYC 1 cut(s) 62
ErhI CCWWGG 1 cut(s) 97
FaiI YATR 4 cut(s) 153, 191, 268, 270
FblI GTMKAC 1 cut(s) 205
Fnu4HI GCNGC 1 cut(s) 19
FokI GGATG 1 cut(s) 17
FriOI GRGCYC 1 cut(s) 62
Fsp4HI GCNGC 1 cut(s) 19
GluI GCNGC 1 cut(s) 19
HapII CCGG 1 cut(s) 256
HinfI GANTC 1 cut(s) 40
HpaII CCGG 1 cut(s) 256
HphI GGTGA 2 cut(s) 65, 113
Hpy166II GTNNAC 1 cut(s) 206
Hpy188I TCNGA 1 cut(s) 89
Hpy8I GTNNAC 1 cut(s) 206
HpyCH4V TGCA 4 cut(s) 18, 122, 134, 166
HpyF3I CTNAG 3 cut(s) 42, 68, 221
Kzo9I GATC 1 cut(s) 108
LpnPI CCDG 4 cut(s) 19, 29, 176, 269
Lsp1109I GCAGC 1 cut(s) 30
LweI GCATC 1 cut(s) 269
MaeIII GTNAC 1 cut(s) 71
MalI GATC 1 cut(s) 110
MboI GATC 1 cut(s) 108
MboII GAAGA 1 cut(s) 168
MfeI CAATTG 1 cut(s) 13
MhlI GDGCHC 2 cut(s) 62, 147
MluCI AATT 5 cut(s) 13, 90, 128, 214, 275
MlyI GAGTC 1 cut(s) 34
MnlI CCTC 2 cut(s) 73, 219
MseI TTAA 1 cut(s) 239
MspI CCGG 1 cut(s) 256
MspR9I CCNGG 1 cut(s) 257
MunI CAATTG 1 cut(s) 13
NciI CCSGG 1 cut(s) 257
NdeII GATC 1 cut(s) 108
NmuCI GTSAC 1 cut(s) 71
PkrI GCNGC 1 cut(s) 20
PleI GAGTC 1 cut(s) 34
PpsI GAGTC 1 cut(s) 34
SaqAI TTAA 1 cut(s) 239
SatI GCNGC 1 cut(s) 19
Sau3AI GATC 1 cut(s) 108
SchI GAGTC 1 cut(s) 34
ScrFI CCNGG 1 cut(s) 257
SduI GDGCHC 2 cut(s) 62, 147
SetI ASST 5 cut(s) 78, 84, 165, 185, 211
SfaNI GCATC 1 cut(s) 269
SgeI CNNG 9 cut(s) 35, 46, 56, 110, 125, 127, 175, 268, 269
Sse9I AATT 5 cut(s) 13, 90, 128, 214, 275
SsiI CCGC 1 cut(s) 253
SspI AATATT 1 cut(s) 53
StyD4I CCNGG 1 cut(s) 255
StyI CCWWGG 1 cut(s) 97
TasI AATT 5 cut(s) 13, 90, 128, 214, 275
Tru1I TTAA 1 cut(s) 239
Tru9I TTAA 1 cut(s) 239
TseFI GTSAC 1 cut(s) 71
TseI GCWGC 1 cut(s) 18
Tsp45I GTSAC 1 cut(s) 71
TspDTI ATGAA 1 cut(s) 206
XapI RAATTY 3 cut(s) 90, 128, 275
XmiI GTMKAC 1 cut(s) 205
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.