Rmu_sc0004020.1_g000010

F-box FBD LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004020.1
OG0000467
Physical Location & Seq
Reverse (-)
58260 .. 60072
1813 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0004020.1_g000010.1.cds

Sequence Viewer

Length: 1086 bp
atgtacttgttcaagaacgtagaatctgacaccgggaatataactgaaaaccgtattcacatgccctgggaaacagattttccaactgtttcactcaaaaacaaaaaagcttcggatcggcggagggaggaggaagaagacaagcaccgtgacagaatcagcgatctctcagatgatatattgcatctcatactctcattcttgcctttgaaatcggttgggcaaaccagtgtcctatctcgaagatggagtcatgtatggtcttcctatcctatcatcgacttctacgagatctttactggtgatgaagcttttcatcaccagacaaatgaaaggatcatcaacacagtgttggctccccgcaacgacaactatagtataaagatttctccaattccgggggatccgaaccggtcttgttctttgtctagggttgaacaccttttactcgaagtctcgttaagcagtgaaaacagatcatttgaattgcctcgatgtcaacttaagtgccactcattacggaggctcgagtctaataacagtagatgtgggagttcatggctagggtttccctcttcttacgttgttgggtcttatctccgttcacttcacgcattgtccctaacatgtgtggatagtgctttggttatggattttttctccggttcttcattcccttctcttgaacaattgaagatagaaagttgcagaggaacgagtgatctcaaaattagttgtccgaacctaagagatgtacgagttttcgatatggatttaaatagcttagacatctccggaatgagaataaaatttttgaatgtctggtggtgtttcaaggagtgcgtcaatggaagttgggtgaaaatccttgcccctaatccacaatttattacttggggctataatgccattactgaaaactgttcaatacagagctttcctaggctcaaaagatctttcatgtggtctcggaatagaggtcccattacaaagacgaagattaataataatggtgttgtcggtcttctttctggttcatctcaagttgaagttcttaccatatcctataagtctataactagttaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBD

Protein Analysis

361

Amino Acids

41.29

Weight (kDa)

8.48

Isoelectric Point (pI)

48.9

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000467)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g02550 FvH4_6g26921 FvH4_6g45630
malus_domestica MD01G1113200.v1.1 MD09G1101600.v1.1 MD17G1084600.v1.1
prunus_persica Prupe.3G224400_v2.0.a1 Prupe.3G224500_v2.0.a1 Prupe.3G224600_v2.0.a1
pyrus_communis pycom02g19930 pycom09g00760 pycom09g00770 pycom17g08170
rosa_chinensis RchiOBHm_Chr1g0350511 RchiOBHm_Chr2g0086171 RchiOBHm_Chr2g0117831 RchiOBHm_Chr3g0450391 RchiOBHm_Chr4g0409631 RchiOBHm_Chr5g0039731
rosa_laevigata RLG00000008538 RLG00000018375 RLG00000021415 RLG00000028481 RLG00000033926 RLG00000033937 RLG00000033938 RLG00000033939 RLG00000033941
rosa_multiflora Rmu_sc0000103.1_g000011 Rmu_sc0000330.1_g000009 Rmu_sc0000652.1_g000002 Rmu_sc0001507.1_g000017 Rmu_sc0004020.1_g000010 Rmu_sc0026676.1_g000001 Rmu_ssc0000083.1_g000022 Rmu_ssc0000400.1_g000021
rosa_roxburghii Rroxscaffold_1G00040760 Rroxscaffold_1G00041490 Rroxscaffold_1G00041500 Rroxscaffold_1G00041630 Rroxscaffold_2G00087990 Rroxscaffold_2G00126200 Rroxscaffold_4G00304800 Rroxscaffold_5G00354160 Rroxscaffold_5G00354170
rosa_rugosa Rorug01G0211500 Rorug02G0214300 Rorug02G0496800 Rorug02G0627700 Rorug04G0095600 Rorug05G0181700
rosa_samantha Rh1AG226300 Rh1BG194700 Rh1CG211100 Rh1DG222900 Rh2AG270500 Rh2AG270600 Rh2AG562900 Rh2AG563000 Rh2BG281900 Rh2BG282000 Rh2BG575700 Rh2CG269300 Rh2CG269400 Rh2DG278300 Rh2DG296200 Rh2DG585900 Rh3AG028000 Rh3AG028100 Rh3BG028500 Rh3BG028600 Rh3CG027300 Rh3CG027400 Rh3DG028400 Rh3DG028500 Rh4BG156800 Rh4CG167300 Rh4CG167400 Rh4DG151100 Rh5AG268000 Rh5BG272400 Rh5BG272500 Rh5CG304000 Rh5CG305000 Rh5CG305100 Rh5DG280500
rosa_wichuraiana Rw1G019530 Rw2G021370 Rw4G012860 Rw4G012970 Rw5G025070

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 794
AciI CCGC 2 cut(s) 121, 361
AclWI GGATC 4 cut(s) 123, 344, 398, 411
AcsI RAATTY 1 cut(s) 809
AfaI GTAC 2 cut(s) 5, 756
AfiI CCNNNNNNNGG 1 cut(s) 398
AflII CTTAAG 1 cut(s) 503
AflIII ACRYGT 1 cut(s) 626
AgeI ACCGGT 1 cut(s) 411
AhlI ACTAGT 1 cut(s) 1079
AjnI CCWGG 1 cut(s) 65
AluBI AGCT 4 cut(s) 110, 311, 783, 936
AluI AGCT 4 cut(s) 110, 311, 783, 936
Alw26I GTCTC 2 cut(s) 460, 972
AlwI GGATC 4 cut(s) 123, 344, 398, 411
Ama87I CYCGRG 1 cut(s) 527
Aor13HI TCCGGA 1 cut(s) 794
ApoI RAATTY 1 cut(s) 809
ArsI GACNNNNNNTTYG 2 cut(s) 235, 267
AseI ATTAAT 1 cut(s) 1002
AsiGI ACCGGT 1 cut(s) 411
Asp700I GAANNNNTTC 1 cut(s) 312
AspA2I CCTAGG 1 cut(s) 941
AspS9I GGNCC 1 cut(s) 980
AsuC2I CCSGG 2 cut(s) 34, 399
AsuHPI GGTGA 3 cut(s) 311, 314, 871
AvaI CYCGRG 1 cut(s) 527
AvaII GGWCC 1 cut(s) 980
AvrII CCTAGG 1 cut(s) 941
BamHI GGATCC 1 cut(s) 403
BbsI GAAGAC 3 cut(s) 144, 255, 1016
BccI CCATC 1 cut(s) 240
BciT130I CCWGG 1 cut(s) 67
BcnI CCSGG 2 cut(s) 34, 399
BcoDI GTCTC 2 cut(s) 460, 972
BcuI ACTAGT 1 cut(s) 1079
BfaI CTAG 4 cut(s) 429, 563, 942, 1080
BfmI CTRYAG 1 cut(s) 373
BfrI CTTAAG 1 cut(s) 503
BglII AGATCT 2 cut(s) 291, 953
BlnI CCTAGG 1 cut(s) 941
Bme1390I CCNGG 3 cut(s) 34, 67, 399
Bme18I GGWCC 1 cut(s) 980
BmeT110I CYCGRG 1 cut(s) 527
BmgT120I GGNCC 1 cut(s) 980
BmiI GGNNCC 3 cut(s) 357, 405, 982
BmrFI CCNGG 3 cut(s) 34, 67, 399
BmsI GCATC 1 cut(s) 193
BpiI GAAGAC 3 cut(s) 144, 255, 1016
BpuEI CTTGAG 1 cut(s) 1026
BpuMI CCSGG 2 cut(s) 34, 399
BsaI GGTCTC 1 cut(s) 972
BsaJI CCNNGG 4 cut(s) 65, 66, 398, 941
BsaWI WCCGGW 3 cut(s) 411, 662, 794
Bsc4I CCNNNNNNNGG 1 cut(s) 398
Bse118I RCCGGY 1 cut(s) 411
Bse1I ACTGG 2 cut(s) 228, 304
BseAI TCCGGA 1 cut(s) 794
BseBI CCWGG 1 cut(s) 67
BseDI CCNNGG 4 cut(s) 65, 66, 398, 941
BseLI CCNNNNNNNGG 1 cut(s) 398
BseMII CTCAG 1 cut(s) 183
BseNI ACTGG 2 cut(s) 228, 304
BseRI GAGGAG 1 cut(s) 143
BshTI ACCGGT 1 cut(s) 411
BsiHKCI CYCGRG 1 cut(s) 527
BsiSI CCGG 5 cut(s) 33, 398, 412, 663, 795
BslFI GGGAC 2 cut(s) 604, 966
BslI CCNNNNNNNGG 1 cut(s) 398
BsmAI GTCTC 2 cut(s) 460, 972
BsmFI GGGAC 2 cut(s) 604, 966
Bso31I GGTCTC 1 cut(s) 972
BsoBI CYCGRG 1 cut(s) 527
Bsp13I TCCGGA 1 cut(s) 794
Bsp143I GATC 8 cut(s) 115, 163, 291, 336, 403, 476, 721, 953
BspACI CCGC 2 cut(s) 121, 361
BspCNI CTCAG 1 cut(s) 182
BspEI TCCGGA 1 cut(s) 794
BspLI GGNNCC 3 cut(s) 357, 405, 982
BspPI GGATC 4 cut(s) 123, 344, 398, 411
BspTI CTTAAG 1 cut(s) 503
BspTNI GGTCTC 1 cut(s) 972
BsrFI RCCGGY 1 cut(s) 411
BsrI ACTGG 2 cut(s) 228, 304
BssAI RCCGGY 1 cut(s) 411
BssECI CCNNGG 4 cut(s) 65, 66, 398, 941
BssMI GATC 8 cut(s) 115, 163, 291, 336, 403, 476, 721, 953
BssT1I CCWWGG 1 cut(s) 941
Bst2UI CCWGG 1 cut(s) 67
Bst4CI ACNGT 6 cut(s) 53, 88, 149, 349, 542, 923
Bst6I CTCTTC 1 cut(s) 580
BstAFI CTTAAG 1 cut(s) 503
BstDEI CTNAG 3 cut(s) 169, 746, 784
BstKTI GATC 8 cut(s) 118, 166, 294, 339, 406, 479, 724, 956
BstMAI GTCTC 2 cut(s) 460, 972
BstMBI GATC 8 cut(s) 115, 163, 291, 336, 403, 476, 721, 953
BstNI CCWGG 1 cut(s) 67
BstNSI RCATGY 2 cut(s) 64, 630
BstSCI CCNGG 3 cut(s) 32, 65, 397
BstSFI CTRYAG 1 cut(s) 373
BstV2I GAAGAC 3 cut(s) 144, 255, 1016
BstX2I RGATCY 3 cut(s) 291, 403, 953
BstYI RGATCY 3 cut(s) 291, 403, 953
BtsI GCAGTG 1 cut(s) 472
BtsIMutI CAGTG 3 cut(s) 235, 354, 472
Cfr10I RCCGGY 1 cut(s) 411
Cfr13I GGNCC 1 cut(s) 980
CseI GACGC 1 cut(s) 832
Csp6I GTAC 2 cut(s) 4, 755
CspAI ACCGGT 1 cut(s) 411
CviAII CATG 5 cut(s) 61, 254, 558, 627, 961
CviJI RGCY 9 cut(s) 110, 311, 356, 526, 562, 783, 900, 936, 946
CviKI_1 RGCY 9 cut(s) 110, 311, 356, 526, 562, 783, 900, 936, 946
CviQI GTAC 2 cut(s) 4, 755
DdeI CTNAG 3 cut(s) 169, 746, 784
DpnI GATC 8 cut(s) 117, 165, 293, 338, 405, 478, 723, 955
DpnII GATC 8 cut(s) 115, 163, 291, 336, 403, 476, 721, 953
DraI TTTAAA 1 cut(s) 777
Eam1104I CTCTTC 1 cut(s) 580
EarI CTCTTC 1 cut(s) 580
EciI GGCGGA 1 cut(s) 136
Eco130I CCWWGG 1 cut(s) 941
Eco31I GGTCTC 1 cut(s) 972
Eco47I GGWCC 1 cut(s) 980
Eco88I CYCGRG 1 cut(s) 527
EcoO109I RGGNCCY 1 cut(s) 980
EcoRII CCWGG 1 cut(s) 65
EcoT14I CCWWGG 1 cut(s) 941
ErhI CCWWGG 1 cut(s) 941
FaeI CATG 5 cut(s) 64, 257, 561, 630, 964
FaqI GGGAC 2 cut(s) 604, 966
FatI CATG 5 cut(s) 60, 253, 557, 626, 960
FauI CCCGC 1 cut(s) 368
FspBI CTAG 4 cut(s) 429, 563, 942, 1080
HapII CCGG 5 cut(s) 33, 398, 412, 663, 795
HgaI GACGC 1 cut(s) 832
Hin1II CATG 5 cut(s) 64, 257, 561, 630, 964
HincII GTYRAC 1 cut(s) 500
HindII GTYRAC 1 cut(s) 500
HindIII AAGCTT 2 cut(s) 108, 309
HinfI GANTC 4 cut(s) 23, 156, 250, 530
HpaII CCGG 5 cut(s) 33, 398, 412, 663, 795
HphI GGTGA 3 cut(s) 311, 314, 871
Hpy166II GTNNAC 2 cut(s) 500, 605
Hpy188I TCNGA 6 cut(s) 28, 115, 172, 408, 741, 972
Hpy188III TCNNGA 4 cut(s) 13, 240, 683, 795
Hpy8I GTNNAC 2 cut(s) 500, 605
HpyAV CCTTC 1 cut(s) 687
HpyCH4III ACNGT 6 cut(s) 53, 88, 149, 349, 542, 923
HpyCH4IV ACGT 2 cut(s) 18, 582
HpyCH4V TGCA 2 cut(s) 184, 708
HpyF3I CTNAG 3 cut(s) 169, 746, 784
HpySE526I ACGT 2 cut(s) 18, 582
Hsp92II CATG 5 cut(s) 64, 257, 561, 630, 964
Kpn2I TCCGGA 1 cut(s) 794
Kzo9I GATC 8 cut(s) 115, 163, 291, 336, 403, 476, 721, 953
LmnI GCTCC 1 cut(s) 361
LweI GCATC 1 cut(s) 193
MaeI CTAG 4 cut(s) 429, 563, 942, 1080
MaeII ACGT 2 cut(s) 18, 582
MaeIII GTNAC 1 cut(s) 149
MalI GATC 8 cut(s) 117, 165, 293, 338, 405, 478, 723, 955
MboI GATC 8 cut(s) 115, 163, 291, 336, 403, 476, 721, 953
MboII GAAGA 9 cut(s) 146, 149, 255, 255, 567, 660, 706, 1009, 1016
MfeI CAATTG 1 cut(s) 689
MflI RGATCY 3 cut(s) 291, 403, 953
MluCI AATT 6 cut(s) 393, 485, 689, 729, 809, 884
MlyI GAGTC 2 cut(s) 259, 539
MmeI TCCRAC 1 cut(s) 107
MnlI CCTC 8 cut(s) 117, 121, 124, 501, 516, 583, 704, 971
MroI TCCGGA 1 cut(s) 794
MroXI GAANNNNTTC 1 cut(s) 312
MseI TTAA 5 cut(s) 461, 504, 776, 1002, 1084
MspCI CTTAAG 1 cut(s) 503
MspI CCGG 5 cut(s) 33, 398, 412, 663, 795
MspR9I CCNGG 3 cut(s) 34, 67, 399
MunI CAATTG 1 cut(s) 689
MvaI CCWGG 1 cut(s) 67
NciI CCSGG 2 cut(s) 34, 399
NdeII GATC 8 cut(s) 115, 163, 291, 336, 403, 476, 721, 953
NlaIII CATG 5 cut(s) 64, 257, 561, 630, 964
NlaIV GGNNCC 3 cut(s) 357, 405, 982
NmuCI GTSAC 1 cut(s) 149
NspI RCATGY 2 cut(s) 64, 630
PaeR7I CTCGAG 1 cut(s) 527
PasI CCCWGGG 1 cut(s) 66
PciI ACATGT 1 cut(s) 626
PcsI WCGNNNNNNNCGW 1 cut(s) 285
PdmI GAANNNNTTC 1 cut(s) 312
PfeI GAWTC 2 cut(s) 23, 156
PinAI ACCGGT 1 cut(s) 411
PleI GAGTC 2 cut(s) 258, 538
PpsI GAGTC 2 cut(s) 258, 538
PpuMI RGGWCCY 1 cut(s) 980
PscI ACATGT 1 cut(s) 626
PshBI ATTAAT 1 cut(s) 1002
Psp5II RGGWCCY 1 cut(s) 980
Psp6I CCWGG 1 cut(s) 65
PspGI CCWGG 1 cut(s) 65
PspN4I GGNNCC 3 cut(s) 357, 405, 982
PspPI GGNCC 1 cut(s) 980
PspPPI RGGWCCY 1 cut(s) 980
PspXI VCTCGAGB 1 cut(s) 527
PsrI GAACNNNNNNTAC 2 cut(s) 429, 461
PsuI RGATCY 3 cut(s) 291, 403, 953
RsaI GTAC 2 cut(s) 5, 756
RsaNI GTAC 2 cut(s) 4, 755
SaqAI TTAA 5 cut(s) 461, 504, 776, 1002, 1084
Sau3AI GATC 8 cut(s) 115, 163, 291, 336, 403, 476, 721, 953
Sau96I GGNCC 1 cut(s) 980
SchI GAGTC 2 cut(s) 259, 539
ScrFI CCNGG 3 cut(s) 34, 67, 399
SetI ASST 9 cut(s) 21, 112, 313, 444, 585, 747, 785, 938, 982
SfaNI GCATC 1 cut(s) 193
SfcI CTRYAG 1 cut(s) 373
Sfr274I CTCGAG 1 cut(s) 527
SinI GGWCC 1 cut(s) 980
SlaI CTCGAG 1 cut(s) 527
SmiI ATTTAAAT 1 cut(s) 777
SmlI CTYRAG 3 cut(s) 503, 527, 1041
SmoI CTYRAG 3 cut(s) 503, 527, 1041
SpeI ACTAGT 1 cut(s) 1079
Sse9I AATT 6 cut(s) 393, 485, 689, 729, 809, 884
SsiI CCGC 2 cut(s) 121, 361
SspMI CTAG 4 cut(s) 429, 563, 942, 1080
StyD4I CCNGG 3 cut(s) 32, 65, 397
StyI CCWWGG 1 cut(s) 941
SwaI ATTTAAAT 1 cut(s) 777
TaaI ACNGT 6 cut(s) 53, 88, 149, 349, 542, 923
TaiI ACGT 2 cut(s) 21, 585
TaqI TCGA 6 cut(s) 241, 279, 450, 493, 528, 765
TaqII GACCGA 1 cut(s) 1010
TasI AATT 6 cut(s) 393, 485, 689, 729, 809, 884
TatI WGTACW 1 cut(s) 3
TfiI GAWTC 2 cut(s) 23, 156
Tru1I TTAA 5 cut(s) 461, 504, 776, 1002, 1084
Tru9I TTAA 5 cut(s) 461, 504, 776, 1002, 1084
TscAI CASTG 3 cut(s) 235, 354, 472
TseFI GTSAC 1 cut(s) 149
Tsp45I GTSAC 1 cut(s) 149
TspDTI ATGAA 7 cut(s) 305, 321, 345, 546, 660, 949, 1026
TspGWI ACGGA 2 cut(s) 535, 590
TspRI CASTG 3 cut(s) 235, 354, 472
Vha464I CTTAAG 1 cut(s) 503
VpaK11BI GGWCC 1 cut(s) 980
VspI ATTAAT 1 cut(s) 1002
XapI RAATTY 1 cut(s) 809
XceI RCATGY 2 cut(s) 64, 630
XhoI CTCGAG 1 cut(s) 527
XmaJI CCTAGG 1 cut(s) 941
XmnI GAANNNNTTC 1 cut(s) 312
XspI CTAG 4 cut(s) 429, 563, 942, 1080
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.