Rh3DG028400

F-box FBD LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3D
OG0000467
Physical Location & Seq
Forward (+)
1900463 .. 1907084
6622 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3DG028400.1

Sequence Viewer

Length: 1047 bp
ATGGGGTCTTGTCTTGATTATTCCTTTTATATTGAAGATTTTTCCTTTTATATTTACTTAGGTATTCTTGATTATGGATTTGTAAACCCTATGGGCTATGGATTTGTATTCTTGGCGTTCTGGGTATTCCTGTTCACACACAAGGAAGCTTCAGATCGGTGGAGGGAGGAGGAAGAAGAAAACAAGCACCATGAGCAACGAGATAAGGTTTCAGTTGACAGAATCAGCGGCCTCCCAGATCGGTGCATTTATGAGGAGGAAGAGATCAAGCACCATGAGAAGAGAAACATACGTGATCTCCCAGATGATATTTTGCTTCTCATACTCTCATTCCTGCCTTTCAAATCCGTCGGCCAATCCAGTGTGTTATCTCGAAGATGGAGTCATGTATGGTCTTCCTATCCCATCTTTGACTTCTACGACATCTTTACTGGTAATGAAGCTCTTCATCACCAGACAAGAGCAAGGATCATAAACACAGTATTGGCTGGCCAAGACGAAAACTATAATATAATGTGTTCGCGCCTCAATATTCTCTTCCCAAGCGGCAGTTTAGGTCAATTTCGAAGAGTTGGGGAAGATCCAAACGATTCTTGTTTTGGTAGGGTTGAGGAGCTAGTACTGGACATCTCCTTGAGTAGTGAAAACACATCTGTTTTGCCTCGATGTCAACTTAAGTGCCAATCATTAAGGAGTAGTAGCTGTGGGAATTCAAAGGCATGGCTAGGGTTTACCTCTTCTTACGTCGTTTGCTCTTATCTCCTTTCACTTCAATCCTTGTCTCTTACTCGTATGGATTTCTTGGATAGTAGTCATAGTACTGGTGCTTTGGGTGTGGATTTATTTTCTGGTTCTTCATGCCCTTGTCTCGAAAAATTGAATATAAAGAGGTGTAGAGGAATGAGTGATCTCAAAATTTCTTGTCGAAACCTAAAAGATATACGTGTTCTTGATATGGGTTTAAAGAGTATGGACATCTCCAGAATGAGATTAGAAGTTGGGTCAACATTTCGGCCCGAATCTAAAATCCTTTGCTTGGATGGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBD

Protein Analysis

348

Amino Acids

39.9

Weight (kDa)

5.77

Isoelectric Point (pI)

61.03

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box-like PF12937 97 - 129 4.1e-06 F-box-like
F-box PF00646 98 - 136 8.6e-09 F-box domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000467)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g02550 FvH4_6g26921 FvH4_6g45630
malus_domestica MD01G1113200.v1.1 MD09G1101600.v1.1 MD17G1084600.v1.1
prunus_persica Prupe.3G224400_v2.0.a1 Prupe.3G224500_v2.0.a1 Prupe.3G224600_v2.0.a1
pyrus_communis pycom02g19930 pycom09g00760 pycom09g00770 pycom17g08170
rosa_chinensis RchiOBHm_Chr1g0350511 RchiOBHm_Chr2g0086171 RchiOBHm_Chr2g0117831 RchiOBHm_Chr3g0450391 RchiOBHm_Chr4g0409631 RchiOBHm_Chr5g0039731
rosa_laevigata RLG00000008538 RLG00000018375 RLG00000021415 RLG00000028481 RLG00000033926 RLG00000033937 RLG00000033938 RLG00000033939 RLG00000033941
rosa_multiflora Rmu_sc0000103.1_g000011 Rmu_sc0000330.1_g000009 Rmu_sc0000652.1_g000002 Rmu_sc0001507.1_g000017 Rmu_sc0004020.1_g000010 Rmu_sc0026676.1_g000001 Rmu_ssc0000083.1_g000022 Rmu_ssc0000400.1_g000021
rosa_roxburghii Rroxscaffold_1G00040760 Rroxscaffold_1G00041490 Rroxscaffold_1G00041500 Rroxscaffold_1G00041630 Rroxscaffold_2G00087990 Rroxscaffold_2G00126200 Rroxscaffold_4G00304800 Rroxscaffold_5G00354160 Rroxscaffold_5G00354170
rosa_rugosa Rorug01G0211500 Rorug02G0214300 Rorug02G0496800 Rorug02G0627700 Rorug04G0095600 Rorug05G0181700
rosa_samantha Rh1AG226300 Rh1BG194700 Rh1CG211100 Rh1DG222900 Rh2AG270500 Rh2AG270600 Rh2AG562900 Rh2AG563000 Rh2BG281900 Rh2BG282000 Rh2BG575700 Rh2CG269300 Rh2CG269400 Rh2DG278300 Rh2DG296200 Rh2DG585900 Rh3AG028000 Rh3AG028100 Rh3BG028500 Rh3BG028600 Rh3CG027300 Rh3CG027400 Rh3DG028400 Rh3DG028500 Rh4BG156800 Rh4CG167300 Rh4CG167400 Rh4DG151100 Rh5AG268000 Rh5BG272400 Rh5BG272500 Rh5CG304000 Rh5CG305000 Rh5CG305100 Rh5DG280500
rosa_wichuraiana Rw1G019530 Rw2G021370 Rw4G012860 Rw4G012970 Rw5G025070

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 523
AciI CCGC 2 cut(s) 228, 546
AclWI GGATC 2 cut(s) 476, 575
AcoI YGGCCR 2 cut(s) 352, 490
AcsI RAATTY 2 cut(s) 709, 915
AcuI CTGAAG 1 cut(s) 135
AfaI GTAC 2 cut(s) 621, 820
AfiI CCNNNNNNNGG 1 cut(s) 1036
AflII CTTAAG 1 cut(s) 674
AflIII ACRYGT 1 cut(s) 943
AgsI TTSAA 5 cut(s) 35, 343, 714, 773, 880
AluBI AGCT 4 cut(s) 149, 443, 616, 702
AluI AGCT 4 cut(s) 149, 443, 616, 702
Alw26I GTCTC 2 cut(s) 786, 872
AlwI GGATC 2 cut(s) 476, 575
AoxI GGCC 4 cut(s) 229, 352, 490, 1013
ApoI RAATTY 2 cut(s) 709, 915
ArsI GACNNNNNNTTYG 2 cut(s) 367, 399
Asp700I GAANNNNTTC 1 cut(s) 444
AspLEI GCGC 1 cut(s) 525
AspS9I GGNCC 1 cut(s) 1014
AsuHPI GGTGA 1 cut(s) 443
AsuII TTCGAA 1 cut(s) 565
BalI TGGCCA 1 cut(s) 492
BbsI GAAGAC 1 cut(s) 387
BccI CCATC 3 cut(s) 372, 413, 1034
BcoDI GTCTC 2 cut(s) 786, 872
BfaI CTAG 2 cut(s) 617, 725
BfrI CTTAAG 1 cut(s) 674
BisI GCNGC 2 cut(s) 229, 547
BlsI GCNGC 2 cut(s) 230, 548
BmcAI AGTACT 2 cut(s) 621, 820
BmgT120I GGNCC 1 cut(s) 1014
BpiI GAAGAC 1 cut(s) 387
BpmI CTGGAG 1 cut(s) 964
Bpu14I TTCGAA 1 cut(s) 565
BpuEI CTTGAG 1 cut(s) 655
BsaAI YACGTR 2 cut(s) 293, 944
BsaXI ACNNNNNCTCC 2 cut(s) 282, 312
Bsc4I CCNNNNNNNGG 1 cut(s) 1036
Bse1I ACTGG 4 cut(s) 360, 436, 627, 826
BseGI GGATG 1 cut(s) 1045
BseLI CCNNNNNNNGG 1 cut(s) 1036
BseNI ACTGG 4 cut(s) 360, 436, 627, 826
BseRI GAGGAG 3 cut(s) 182, 269, 626
Bsh1236I CGCG 1 cut(s) 523
BshFI GGCC 4 cut(s) 231, 354, 492, 1015
BslI CCNNNNNNNGG 1 cut(s) 1036
BsmAI GTCTC 2 cut(s) 786, 872
BsnI GGCC 4 cut(s) 231, 354, 492, 1015
Bsp119I TTCGAA 1 cut(s) 565
Bsp143I GATC 7 cut(s) 154, 238, 264, 295, 468, 580, 907
BspACI CCGC 2 cut(s) 228, 546
BspANI GGCC 4 cut(s) 231, 354, 492, 1015
BspFNI CGCG 1 cut(s) 523
BspPI GGATC 2 cut(s) 476, 575
BspQI GCTCTTC 1 cut(s) 450
BspT104I TTCGAA 1 cut(s) 565
BspTI CTTAAG 1 cut(s) 674
BsrI ACTGG 4 cut(s) 360, 436, 627, 826
BssMI GATC 7 cut(s) 154, 238, 264, 295, 468, 580, 907
Bst4CI ACNGT 1 cut(s) 481
Bst6I CTCTTC 6 cut(s) 255, 275, 450, 542, 562, 742
BstAFI CTTAAG 1 cut(s) 674
BstBAI YACGTR 2 cut(s) 293, 944
BstBI TTCGAA 1 cut(s) 565
BstC8I GCNNGC 1 cut(s) 490
BstDEI CTNAG 1 cut(s) 58
BstF5I GGATG 1 cut(s) 1045
BstFNI CGCG 1 cut(s) 523
BstHHI GCGC 1 cut(s) 525
BstKTI GATC 7 cut(s) 157, 241, 267, 298, 471, 583, 910
BstMAI GTCTC 2 cut(s) 786, 872
BstMBI GATC 7 cut(s) 154, 238, 264, 295, 468, 580, 907
BstMWI GCNNNNNNNGC 1 cut(s) 193
BstUI CGCG 1 cut(s) 523
BstV2I GAAGAC 1 cut(s) 387
BstX2I RGATCY 1 cut(s) 580
BstYI RGATCY 1 cut(s) 580
BsuRI GGCC 4 cut(s) 231, 354, 492, 1015
BtsCI GGATG 1 cut(s) 1045
BtsIMutI CAGTG 1 cut(s) 367
Cac8I GCNNGC 1 cut(s) 490
CfoI GCGC 1 cut(s) 525
Cfr13I GGNCC 1 cut(s) 1014
Csp6I GTAC 2 cut(s) 620, 819
CviAII CATG 5 cut(s) 191, 275, 386, 720, 858
CviQI GTAC 2 cut(s) 620, 819
DdeI CTNAG 1 cut(s) 58
DpnI GATC 7 cut(s) 156, 240, 266, 297, 470, 582, 909
DpnII GATC 7 cut(s) 154, 238, 264, 295, 468, 580, 907
DraI TTTAAA 1 cut(s) 963
EaeI YGGCCR 2 cut(s) 352, 490
Eam1104I CTCTTC 6 cut(s) 255, 275, 450, 542, 562, 742
EarI CTCTTC 6 cut(s) 255, 275, 450, 542, 562, 742
Eco57I CTGAAG 1 cut(s) 135
EcoRI GAATTC 1 cut(s) 709
FaeI CATG 5 cut(s) 194, 278, 389, 723, 861
FatI CATG 5 cut(s) 190, 274, 385, 719, 857
Fnu4HI GCNGC 2 cut(s) 229, 547
Fsp4HI GCNGC 2 cut(s) 229, 547
FspBI CTAG 2 cut(s) 617, 725
GlaI GCGC 1 cut(s) 524
GluI GCNGC 2 cut(s) 229, 547
GsuI CTGGAG 1 cut(s) 964
HaeIII GGCC 4 cut(s) 231, 354, 492, 1015
HhaI GCGC 1 cut(s) 525
Hin1II CATG 5 cut(s) 194, 278, 389, 723, 861
Hin6I GCGC 1 cut(s) 523
HinP1I GCGC 1 cut(s) 523
HincII GTYRAC 3 cut(s) 217, 671, 1005
HindII GTYRAC 3 cut(s) 217, 671, 1005
HindIII AAGCTT 1 cut(s) 147
HinfI GANTC 4 cut(s) 222, 382, 590, 1019
HphI GGTGA 1 cut(s) 443
Hpy166II GTNNAC 6 cut(s) 85, 135, 217, 671, 732, 1005
Hpy188I TCNGA 1 cut(s) 154
Hpy188III TCNNGA 6 cut(s) 14, 68, 372, 869, 950, 981
Hpy8I GTNNAC 6 cut(s) 85, 135, 217, 671, 732, 1005
Hpy99I CGWCG 2 cut(s) 353, 749
HpyCH4III ACNGT 1 cut(s) 481
HpyCH4IV ACGT 3 cut(s) 292, 744, 943
HpyCH4V TGCA 1 cut(s) 246
HpyF10VI GCNNNNNNNGC 1 cut(s) 193
HpyF3I CTNAG 1 cut(s) 58
HpySE526I ACGT 3 cut(s) 292, 744, 943
Hsp92II CATG 5 cut(s) 194, 278, 389, 723, 861
HspAI GCGC 1 cut(s) 523
Kzo9I GATC 7 cut(s) 154, 238, 264, 295, 468, 580, 907
LguI GCTCTTC 1 cut(s) 450
LmnI GCTCC 1 cut(s) 613
MaeI CTAG 2 cut(s) 617, 725
MaeII ACGT 3 cut(s) 292, 744, 943
MalI GATC 7 cut(s) 156, 240, 266, 297, 470, 582, 909
MboI GATC 7 cut(s) 154, 238, 264, 295, 468, 580, 907
MflI RGATCY 1 cut(s) 580
MlsI TGGCCA 1 cut(s) 492
MluCI AATT 4 cut(s) 560, 709, 875, 915
MluNI TGGCCA 1 cut(s) 492
MlyI GAGTC 1 cut(s) 391
Mox20I TGGCCA 1 cut(s) 492
MroXI GAANNNNTTC 1 cut(s) 444
MscI TGGCCA 1 cut(s) 492
MseI TTAA 3 cut(s) 675, 689, 962
Msp20I TGGCCA 1 cut(s) 492
MspA1I CMGCKG 1 cut(s) 228
MspCI CTTAAG 1 cut(s) 674
MvnI CGCG 1 cut(s) 523
MwoI GCNNNNNNNGC 1 cut(s) 193
NdeII GATC 7 cut(s) 154, 238, 264, 295, 468, 580, 907
NlaIII CATG 5 cut(s) 194, 278, 389, 723, 861
NspV TTCGAA 1 cut(s) 565
PciSI GCTCTTC 1 cut(s) 450
PdmI GAANNNNTTC 1 cut(s) 444
PfeI GAWTC 3 cut(s) 222, 590, 1019
PkrI GCNGC 2 cut(s) 230, 548
PleI GAGTC 1 cut(s) 390
PpsI GAGTC 1 cut(s) 390
Ppu21I YACGTR 2 cut(s) 293, 944
PspPI GGNCC 1 cut(s) 1014
PsuI RGATCY 1 cut(s) 580
RsaI GTAC 2 cut(s) 621, 820
RsaNI GTAC 2 cut(s) 620, 819
SapI GCTCTTC 1 cut(s) 450
SaqAI TTAA 3 cut(s) 675, 689, 962
SatI GCNGC 2 cut(s) 229, 547
Sau3AI GATC 7 cut(s) 154, 238, 264, 295, 468, 580, 907
Sau96I GGNCC 1 cut(s) 1014
ScaI AGTACT 2 cut(s) 621, 820
SchI GAGTC 1 cut(s) 391
SfuI TTCGAA 1 cut(s) 565
SmlI CTYRAG 2 cut(s) 634, 674
SmoI CTYRAG 2 cut(s) 634, 674
Sse9I AATT 4 cut(s) 560, 709, 875, 915
SsiI CCGC 2 cut(s) 228, 546
SspI AATATT 1 cut(s) 532
SspMI CTAG 2 cut(s) 617, 725
TaaI ACNGT 1 cut(s) 481
TaiI ACGT 3 cut(s) 295, 747, 946
TaqI TCGA 5 cut(s) 373, 565, 664, 870, 925
TasI AATT 4 cut(s) 560, 709, 875, 915
TatI WGTACW 2 cut(s) 619, 818
TauI GCSGC 2 cut(s) 231, 549
TfiI GAWTC 3 cut(s) 222, 590, 1019
Tru1I TTAA 3 cut(s) 675, 689, 962
Tru9I TTAA 3 cut(s) 675, 689, 962
TscAI CASTG 1 cut(s) 367
TspDTI ATGAA 3 cut(s) 437, 453, 846
TspGWI ACGGA 1 cut(s) 337
TspRI CASTG 1 cut(s) 367
Vha464I CTTAAG 1 cut(s) 674
XapI RAATTY 2 cut(s) 709, 915
XmnI GAANNNNTTC 1 cut(s) 444
XspI CTAG 2 cut(s) 617, 725
ZrmI AGTACT 2 cut(s) 621, 820
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.